RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 EXOC6Q8TAG9 804 aa16.14■□□□□ 0.17
USP3-203ENST00000538686 PRXQ9BXM0 1461 aa16.14■□□□□ 0.17
USP3-203ENST00000538686 POLR1AO95602 1720 aaPredicted RBP16.14■□□□□ 0.17
USP3-203ENST00000538686 FSD2A1L4K1 749 aa16.14■□□□□ 0.17
USP3-203ENST00000538686 SLC4A3P48751 1232 aa16.14■□□□□ 0.17
USP3-203ENST00000538686 RGS3P49796 1198 aa16.14■□□□□ 0.17
USP3-203ENST00000538686 BCL11BQ9C0K0 894 aaPredicted RBP16.13■□□□□ 0.17
USP3-203ENST00000538686 TERF1P54274 439 aa16.12■□□□□ 0.17
USP3-203ENST00000538686 ISY1Q9ULR0 285 aaKnown RBP16.12■□□□□ 0.17
USP3-203ENST00000538686 UACAQ9BZF9 1416 aa16.12■□□□□ 0.17
USP3-203ENST00000538686 XRCC6P12956 609 aaKnown RBP eCLIP16.12■□□□□ 0.17
USP3-203ENST00000538686 RANGAP1P46060 587 aaPredicted RBP16.12■□□□□ 0.17
USP3-203ENST00000538686 FAM161AQ3B820 660 aa16.12■□□□□ 0.17
USP3-203ENST00000538686 ESPNB1AK53 854 aa16.11■□□□□ 0.17
USP3-203ENST00000538686 MTERF4Q7Z6M4 381 aaKnown RBP16.1■□□□□ 0.17
USP3-203ENST00000538686 MRE11P49959 708 aa16.09■□□□□ 0.17
USP3-203ENST00000538686 ZNF326Q5BKZ1 582 aaKnown RBP16.08■□□□□ 0.16
USP3-203ENST00000538686 KTN1Q86UP2 1357 aaKnown RBP16.08■□□□□ 0.16
USP3-203ENST00000538686 SMARCA4P51532 1647 aa16.07■□□□□ 0.16
USP3-203ENST00000538686 LRRC9Q6ZRR7 1453 aa16.07■□□□□ 0.16
USP3-203ENST00000538686 RCAN3Q9UKA8 241 aa16.07■□□□□ 0.16
USP3-203ENST00000538686 BECN1Q14457 450 aa16.06■□□□□ 0.16
USP3-203ENST00000538686 UTP14CQ5TAP6 766 aaKnown RBP16.06■□□□□ 0.16
USP3-203ENST00000538686 CCDC18Q5T9S5 1454 aa16.05■□□□□ 0.16
USP3-203ENST00000538686 PDE3BQ13370 1112 aa16.04■□□□□ 0.16
USP3-203ENST00000538686 ARHGAP35Q9NRY4 1499 aa16.04■□□□□ 0.16
USP3-203ENST00000538686 MYH16Q9H6N6 1097 aa16.04■□□□□ 0.16
USP3-203ENST00000538686 PHLDB1Q86UU1 1377 aa16.03■□□□□ 0.16
USP3-203ENST00000538686 FAM50AQ14320 339 aaKnown RBP16.03■□□□□ 0.16
USP3-203ENST00000538686 CANXP27824 592 aaKnown RBP16.03■□□□□ 0.16
USP3-203ENST00000538686 BBXQ8WY36 941 aaPredicted RBP16.03■□□□□ 0.16
USP3-203ENST00000538686 TRIM44Q96DX7 344 aaPredicted RBP16.03■□□□□ 0.16
USP3-203ENST00000538686 CNGB1Q14028 1251 aaPredicted RBP16.01■□□□□ 0.15
USP3-203ENST00000538686 C8orf34Q49A92 452 aa16.01■□□□□ 0.15
USP3-203ENST00000538686 CENPQQ7L2Z9 268 aaPredicted RBP16.01■□□□□ 0.15
USP3-203ENST00000538686 KIAA1211Q6ZU35 1233 aa15.99■□□□□ 0.15
USP3-203ENST00000538686 NAP1L2Q9ULW6 460 aaPredicted RBP15.99■□□□□ 0.15
USP3-203ENST00000538686 CFAP43Q8NDM7 1665 aa15.99■□□□□ 0.15
USP3-203ENST00000538686 HFM1A2PYH4 1435 aa15.98■□□□□ 0.15
USP3-203ENST00000538686 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.98■□□□□ 0.15
USP3-203ENST00000538686 IPO4Q8TEX9 1081 aaKnown RBP15.98■□□□□ 0.15
USP3-203ENST00000538686 VIRMAQ69YN4 1812 aaKnown RBP15.97■□□□□ 0.15
USP3-203ENST00000538686 KDM2BQ8NHM5 1336 aa15.97■□□□□ 0.15
USP3-203ENST00000538686 PNISRQ8TF01 805 aaKnown RBP15.97■□□□□ 0.15
USP3-203ENST00000538686 LRPPRCP42704 1394 aaKnown RBP15.97■□□□□ 0.15
USP3-203ENST00000538686 GTF2E1P29083 439 aaPredicted RBP15.96■□□□□ 0.15
USP3-203ENST00000538686 TNNT2P45379 298 aaPredicted RBP15.96■□□□□ 0.15
USP3-203ENST00000538686 TOP2BQ02880 1626 aa15.96■□□□□ 0.15
USP3-203ENST00000538686 PANK2Q9BZ23 570 aa15.96■□□□□ 0.15
USP3-203ENST00000538686 MYOM3Q5VTT5 1437 aa15.95■□□□□ 0.14
USP3-203ENST00000538686 PTPN23Q9H3S7 1636 aa15.94■□□□□ 0.14
USP3-203ENST00000538686 OFD1O75665 1012 aa15.94■□□□□ 0.14
USP3-203ENST00000538686 DMTNQ08495 405 aa15.94■□□□□ 0.14
USP3-203ENST00000538686 GRPEL1Q9HAV7 217 aa15.94■□□□□ 0.14
USP3-203ENST00000538686 DHX29Q7Z478 1369 aaKnown RBP15.94■□□□□ 0.14
USP3-203ENST00000538686 KIF7Q2M1P5 1343 aa15.93■□□□□ 0.14
USP3-203ENST00000538686 STAC3Q96MF2 364 aa15.93■□□□□ 0.14
USP3-203ENST00000538686 ERBB4Q15303 1308 aa15.92■□□□□ 0.14
USP3-203ENST00000538686 ANTXR1Q9H6X2 564 aa15.91■□□□□ 0.14
USP3-203ENST00000538686 KIF20AO95235 890 aa15.9■□□□□ 0.14
USP3-203ENST00000538686 TMC1Q8TDI8 760 aa15.9■□□□□ 0.14
USP3-203ENST00000538686 FMN1Q68DA7 1419 aa15.9■□□□□ 0.14
USP3-203ENST00000538686 ARID4BQ4LE39 1312 aaPredicted RBP15.9■□□□□ 0.14
USP3-203ENST00000538686 BIVM-ERCC5R4GMW8 1640 aa15.9■□□□□ 0.14
USP3-203ENST00000538686 BRD4O60885 1362 aaPredicted RBP15.89■□□□□ 0.13
USP3-203ENST00000538686 MCM4P33991 863 aa15.89■□□□□ 0.13
USP3-203ENST00000538686 RIPK4P57078 832 aa15.89■□□□□ 0.13
USP3-203ENST00000538686 SPATA31E1Q6ZUB1 1445 aa15.89■□□□□ 0.13
USP3-203ENST00000538686 MIA2Q96PC5 1412 aa15.89■□□□□ 0.13
USP3-203ENST00000538686 RSPH4AQ5TD94 716 aa15.88■□□□□ 0.13
USP3-203ENST00000538686 TAF3Q5VWG9 929 aa15.88■□□□□ 0.13
USP3-203ENST00000538686 CRBNQ96SW2 442 aa15.87■□□□□ 0.13
USP3-203ENST00000538686 GTPBP4Q9BZE4 634 aaKnown RBP15.87■□□□□ 0.13
USP3-203ENST00000538686 HECW1Q76N89 1606 aa15.87■□□□□ 0.13
USP3-203ENST00000538686 ZSCAN30Q86W11 494 aa15.87■□□□□ 0.13
USP3-203ENST00000538686 DDX11L8A8MPP1 907 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 DYNC1I1O14576 645 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 ROCK2O75116 1388 aaKnown RBP15.85■□□□□ 0.13
USP3-203ENST00000538686 INSRP06213 1382 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 TRAK2O60296 914 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 CCDC173Q0VFZ6 552 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 ARXQ96QS3 562 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 FAM13BQ9NYF5 915 aa15.85■□□□□ 0.13
USP3-203ENST00000538686 ZHX1Q9UKY1 873 aaPredicted RBP15.84■□□□□ 0.13
USP3-203ENST00000538686 CCDC144AA2RUR9 1427 aa15.84■□□□□ 0.13
USP3-203ENST00000538686 LETM1O95202 739 aaPredicted RBP15.83■□□□□ 0.13
USP3-203ENST00000538686 SLKQ9H2G2 1235 aaPredicted RBP15.83■□□□□ 0.13
USP3-203ENST00000538686 MSNP26038 577 aaKnown RBP15.83■□□□□ 0.12
USP3-203ENST00000538686 ZMYM4Q5VZL5 1548 aa15.83■□□□□ 0.12
USP3-203ENST00000538686 PPP4R3BQ5MIZ7 849 aa15.82■□□□□ 0.12
USP3-203ENST00000538686 CHMP4BQ9H444 224 aaKnown RBP15.82■□□□□ 0.12
USP3-203ENST00000538686 PLEKHH2Q8IVE3 1493 aa15.82■□□□□ 0.12
USP3-203ENST00000538686 NAIPQ13075 1403 aa15.82■□□□□ 0.12
USP3-203ENST00000538686 PTMSP20962 102 aa15.82■□□□□ 0.12
USP3-203ENST00000538686 CCDC94Q9BW85 323 aaPredicted RBP15.82■□□□□ 0.12
USP3-203ENST00000538686 USP19O94966 1318 aa15.8■□□□□ 0.12
USP3-203ENST00000538686 HS1BP3Q53T59 392 aa15.8■□□□□ 0.12
USP3-203ENST00000538686 FGD6Q6ZV73 1430 aa15.8■□□□□ 0.12
USP3-203ENST00000538686 ANP32BQ92688 251 aaKnown RBP15.8■□□□□ 0.12
USP3-203ENST00000538686 PPP1R9BQ96SB3 815 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms