RNA–Protein interactions for RNA: ENST00000534412.5

PICALM-223, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-223	ENST00000534412	AMER1	Q5JTC6	1135 aa	Predicted RBP	13	□□□□□ -0.33
PICALM-223	ENST00000534412	RYDEN	Q9NUL5	291 aa	Known RBP	13	□□□□□ -0.33
PICALM-223	ENST00000534412	DOK7	Q18PE1	504 aa		12.97	□□□□□ -0.33
PICALM-223	ENST00000534412	ZNF710	Q8N1W2	664 aa		12.97	□□□□□ -0.33
PICALM-223	ENST00000534412	DNAJC5	Q9H3Z4	198 aa		12.97	□□□□□ -0.33
PICALM-223	ENST00000534412	TMEM92	Q6UXU6	159 aa		12.96	□□□□□ -0.33
PICALM-223	ENST00000534412	SHROOM4	Q9ULL8	1493 aa		12.96	□□□□□ -0.34
PICALM-223	ENST00000534412	RIMBP2	O15034	1052 aa		12.95	□□□□□ -0.34
PICALM-223	ENST00000534412	PCDH10	Q9P2E7	1040 aa		12.94	□□□□□ -0.34
PICALM-223	ENST00000534412	PPP1R37	O75864	691 aa		12.93	□□□□□ -0.34
PICALM-223	ENST00000534412	HOXB3	P14651	431 aa	Predicted RBP	12.9	□□□□□ -0.34
PICALM-223	ENST00000534412	NKX1-1	Q15270	411 aa	Predicted RBP	12.9	□□□□□ -0.34
PICALM-223	ENST00000534412	TMC2	Q8TDI7	906 aa		12.9	□□□□□ -0.34
PICALM-223	ENST00000534412	MARVELD3	Q96A59	401 aa		12.9	□□□□□ -0.34
PICALM-223	ENST00000534412	EMP3	P54852	163 aa		12.88	□□□□□ -0.35
PICALM-223	ENST00000534412	C2orf72	A6NCS6	295 aa		12.85	□□□□□ -0.35
PICALM-223	ENST00000534412	RTN4	Q9NQC3	1192 aa	Known RBP	12.85	□□□□□ -0.35
PICALM-223	ENST00000534412	CECR2	Q9BXF3	1484 aa		12.85	□□□□□ -0.35
PICALM-223	ENST00000534412	DCAF1	Q9Y4B6	1507 aa		12.84	□□□□□ -0.35
PICALM-223	ENST00000534412	CDAN1	Q8IWY9	1227 aa		12.83	□□□□□ -0.36
PICALM-223	ENST00000534412	ZSWIM6	Q9HCJ5	1215 aa		12.83	□□□□□ -0.36
PICALM-223	ENST00000534412	CC2D2A	Q9P2K1	1620 aa		12.83	□□□□□ -0.36
PICALM-223	ENST00000534412	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.83	□□□□□ -0.36
PICALM-223	ENST00000534412	KIF3C	O14782	793 aa		12.82	□□□□□ -0.36
PICALM-223	ENST00000534412	HOXB1	P14653	301 aa	Predicted RBP	12.82	□□□□□ -0.36
PICALM-223	ENST00000534412	FAM205C	A6NFA0	338 aa		12.78	□□□□□ -0.36
PICALM-223	ENST00000534412	GTPBP6	O43824	516 aa	Predicted RBP	12.77	□□□□□ -0.37
PICALM-223	ENST00000534412	PLSCR2	Q9NRY7	297 aa		12.77	□□□□□ -0.37
PICALM-223	ENST00000534412	EIF4G1	Q04637	1599 aa	Known RBP	12.77	□□□□□ -0.37
PICALM-223	ENST00000534412	ERBB3	P21860	1342 aa		12.75	□□□□□ -0.37
PICALM-223	ENST00000534412	HS3ST6	Q96QI5	342 aa		12.74	□□□□□ -0.37
PICALM-223	ENST00000534412	BBX	Q8WY36	941 aa	Predicted RBP	12.73	□□□□□ -0.37
PICALM-223	ENST00000534412	GPHN	Q9NQX3	736 aa	Predicted RBP	12.73	□□□□□ -0.37
PICALM-223	ENST00000534412	ARSI	Q5FYB1	569 aa		12.72	□□□□□ -0.37
PICALM-223	ENST00000534412	GPR153	Q6NV75	609 aa		12.72	□□□□□ -0.37
PICALM-223	ENST00000534412	SCRIB	Q14160	1630 aa		12.7	□□□□□ -0.38
PICALM-223	ENST00000534412	FOXK1	P85037	733 aa		12.69	□□□□□ -0.38
PICALM-223	ENST00000534412	SLC34A2	O95436	690 aa		12.68	□□□□□ -0.38
PICALM-223	ENST00000534412	PLPP6	Q8IY26	295 aa		12.68	□□□□□ -0.38
PICALM-223	ENST00000534412	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.68	□□□□□ -0.38
PICALM-223	ENST00000534412	PDE4A	P27815	886 aa		12.66	□□□□□ -0.38
PICALM-223	ENST00000534412	DSG2	Q14126	1118 aa		12.65	□□□□□ -0.38
PICALM-223	ENST00000534412	VARS2	Q5ST30	1063 aa	Known RBP	12.65	□□□□□ -0.38
PICALM-223	ENST00000534412	PCDHGA4	Q9Y5G9	962 aa		12.64	□□□□□ -0.39
PICALM-223	ENST00000534412	POTEB3	A0JP26	581 aa		12.63	□□□□□ -0.39
PICALM-223	ENST00000534412	POTEB	Q6S5H4	581 aa		12.63	□□□□□ -0.39
PICALM-223	ENST00000534412	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.63	□□□□□ -0.39	7e-8	■■■■□ 21.2
PICALM-223	ENST00000534412	CRISPLD2	Q9H0B8	497 aa		12.63	□□□□□ -0.39
PICALM-223	ENST00000534412	TBC1D12	O60347	775 aa		12.61	□□□□□ -0.39
PICALM-223	ENST00000534412	NUDT7	P0C024	238 aa		12.61	□□□□□ -0.39
PICALM-223	ENST00000534412	SPRYD3	Q8NCJ5	442 aa		12.6	□□□□□ -0.39
PICALM-223	ENST00000534412	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.59	□□□□□ -0.39
PICALM-223	ENST00000534412	PPP1R15B	Q5SWA1	713 aa		12.59	□□□□□ -0.39
PICALM-223	ENST00000534412	PTCD2	Q8WV60	388 aa	Known RBP	12.58	□□□□□ -0.4
PICALM-223	ENST00000534412	LARP6	Q9BRS8	491 aa	Known RBP	12.58	□□□□□ -0.4
PICALM-223	ENST00000534412	NCKAP5L	Q9HCH0	1330 aa		12.57	□□□□□ -0.4
PICALM-223	ENST00000534412	DDX27	Q96GQ7	796 aa	Known RBP	12.56	□□□□□ -0.4
PICALM-223	ENST00000534412	ZNF687	Q8N1G0	1237 aa		12.55	□□□□□ -0.4
PICALM-223	ENST00000534412	CFAP44	Q96MT7	982 aa		12.53	□□□□□ -0.4
PICALM-223	ENST00000534412	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
PICALM-223	ENST00000534412	KRTAP3-3	Q9BYR6	98 aa		12.52	□□□□□ -0.41
PICALM-223	ENST00000534412	KRTAP3-2	Q9BYR7	98 aa		12.52	□□□□□ -0.41
PICALM-223	ENST00000534412	LHX6	Q9UPM6	363 aa		12.52	□□□□□ -0.41
PICALM-223	ENST00000534412	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.51	□□□□□ -0.41
PICALM-223	ENST00000534412	PSD	A5PKW4	1024 aa	Predicted RBP	12.5	□□□□□ -0.41
PICALM-223	ENST00000534412	MFSD10	Q14728	455 aa		12.48	□□□□□ -0.41
PICALM-223	ENST00000534412	CADPS2	Q86UW7	1296 aa		12.48	□□□□□ -0.41
PICALM-223	ENST00000534412	SPNS2	Q8IVW8	549 aa		12.48	□□□□□ -0.41
PICALM-223	ENST00000534412	OXER1	Q8TDS5	423 aa		12.48	□□□□□ -0.41
PICALM-223	ENST00000534412	KDM4F	A0A1W2PPD8	638 aa		12.42	□□□□□ -0.42
PICALM-223	ENST00000534412	MAP3K9	P80192	1104 aa		12.42	□□□□□ -0.42
PICALM-223	ENST00000534412	PBX2	P40425	430 aa		12.41	□□□□□ -0.42
PICALM-223	ENST00000534412	PPP4R3B	Q5MIZ7	849 aa		12.41	□□□□□ -0.42
PICALM-223	ENST00000534412	CUX2	O14529	1486 aa		12.4	□□□□□ -0.43
PICALM-223	ENST00000534412	MMRN1	Q13201	1228 aa		12.39	□□□□□ -0.43
PICALM-223	ENST00000534412	ANKRD13D	Q6ZTN6	518 aa		12.38	□□□□□ -0.43
PICALM-223	ENST00000534412	EVI5	O60447	810 aa		12.36	□□□□□ -0.43
PICALM-223	ENST00000534412	LSM11	P83369	360 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
PICALM-223	ENST00000534412	KCNH8	Q96L42	1107 aa		12.35	□□□□□ -0.43
PICALM-223	ENST00000534412	EMILIN3	Q9NT22	766 aa		12.34	□□□□□ -0.43
PICALM-223	ENST00000534412	WDR70	Q9NW82	654 aa		12.34	□□□□□ -0.43
PICALM-223	ENST00000534412	AXIN2	Q9Y2T1	843 aa		12.34	□□□□□ -0.43
PICALM-223	ENST00000534412	ARHGAP33	O14559	1287 aa		12.33	□□□□□ -0.44
PICALM-223	ENST00000534412	ZNF454	Q8N9F8	522 aa		12.33	□□□□□ -0.44
PICALM-223	ENST00000534412	PTGER2	P43116	358 aa		12.31	□□□□□ -0.44
PICALM-223	ENST00000534412	NCAPD3	P42695	1498 aa		12.31	□□□□□ -0.44
PICALM-223	ENST00000534412	CAMK2B	Q13554	666 aa		12.3	□□□□□ -0.44
PICALM-223	ENST00000534412	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.3	□□□□□ -0.44
PICALM-223	ENST00000534412	POTEE	Q6S8J3	1075 aa		12.28	□□□□□ -0.44
PICALM-223	ENST00000534412	ERCC6	Q03468	1493 aa		12.27	□□□□□ -0.44
PICALM-223	ENST00000534412	JPH4	Q96JJ6	628 aa		12.27	□□□□□ -0.45
PICALM-223	ENST00000534412	MYT1L	Q9UL68	1186 aa		12.27	□□□□□ -0.45
PICALM-223	ENST00000534412	FOSB	P53539	338 aa		12.26	□□□□□ -0.45
PICALM-223	ENST00000534412	DPYSL4	O14531	572 aa		12.25	□□□□□ -0.45
PICALM-223	ENST00000534412	KCNK17	Q96T54	332 aa		12.25	□□□□□ -0.45
PICALM-223	ENST00000534412	PSEN2	P49810	448 aa		12.24	□□□□□ -0.45
PICALM-223	ENST00000534412	RNF166	Q96A37	237 aa	Predicted RBP	12.24	□□□□□ -0.45
PICALM-223	ENST00000534412	E2F4	Q16254	413 aa		12.23	□□□□□ -0.45
PICALM-223	ENST00000534412	ZDHHC16	Q969W1	377 aa		12.23	□□□□□ -0.45
PICALM-223	ENST00000534412	ATAD2B	Q9ULI0	1458 aa		12.22	□□□□□ -0.45

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