RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MAP3K1Q13233 1512 aa23.84■■□□□ 1.41
CPSF1-208ENST00000532560 CDC42BPAQ5VT25 1732 aa23.84■■□□□ 1.41
CPSF1-208ENST00000532560 ADGRL1O94910 1474 aa23.84■■□□□ 1.41
CPSF1-208ENST00000532560 EFCAB2Q5VUJ9 269 aa23.84■■□□□ 1.41
CPSF1-208ENST00000532560 RICTORQ6R327 1708 aa23.84■■□□□ 1.41
CPSF1-208ENST00000532560 RAPGEF3O95398 923 aa23.81■■□□□ 1.4
CPSF1-208ENST00000532560 GPATCH8Q9UKJ3 1502 aaKnown RBP23.79■■□□□ 1.4
CPSF1-208ENST00000532560 POGZQ7Z3K3 1410 aa23.79■■□□□ 1.4
CPSF1-208ENST00000532560 ZMYM4Q5VZL5 1548 aa23.79■■□□□ 1.4
CPSF1-208ENST00000532560 SCAPERQ9BY12 1400 aa23.78■■□□□ 1.4
CPSF1-208ENST00000532560 LRRC9Q6ZRR7 1453 aa23.77■■□□□ 1.4
CPSF1-208ENST00000532560 SUPT6HQ7KZ85 1726 aaKnown RBP23.77■■□□□ 1.4
CPSF1-208ENST00000532560 CCNB3Q8WWL7 1395 aa23.77■■□□□ 1.4
CPSF1-208ENST00000532560 ABCC1P33527 1531 aa23.76■■□□□ 1.39
CPSF1-208ENST00000532560 ITSN2Q9NZM3 1697 aa23.74■■□□□ 1.39
CPSF1-208ENST00000532560 NCOA2Q15596 1464 aa23.74■■□□□ 1.39
CPSF1-208ENST00000532560 ARHGEF40Q8TER5 1519 aa23.73■■□□□ 1.39
CPSF1-208ENST00000532560 ZNF518AQ6AHZ1 1483 aa23.72■■□□□ 1.39
CPSF1-208ENST00000532560 SAMD9LQ8IVG5 1584 aa23.71■■□□□ 1.39
CPSF1-208ENST00000532560 KDM5CP41229 1560 aa23.7■■□□□ 1.38
CPSF1-208ENST00000532560 MAGI2Q86UL8 1455 aa23.7■■□□□ 1.38
CPSF1-208ENST00000532560 ARHGEF12Q9NZN5 1544 aa23.68■■□□□ 1.38
CPSF1-208ENST00000532560 CFDP1Q9UEE9 299 aaPredicted RBP23.67■■□□□ 1.38
CPSF1-208ENST00000532560 ZFYVE16Q7Z3T8 1539 aa23.67■■□□□ 1.38
CPSF1-208ENST00000532560 PLEKHH2Q8IVE3 1493 aa23.67■■□□□ 1.38
CPSF1-208ENST00000532560 KANK4Q5T7N3 995 aaPredicted RBP23.66■■□□□ 1.38
CPSF1-208ENST00000532560 APLP2Q06481 763 aa23.65■■□□□ 1.38
CPSF1-208ENST00000532560 KIAA1107Q9UPP5 1409 aa23.65■■□□□ 1.38
CPSF1-208ENST00000532560 SYCP2Q9BX26 1530 aa23.64■■□□□ 1.38
CPSF1-208ENST00000532560 YEATS2Q9ULM3 1422 aa23.63■■□□□ 1.37
CPSF1-208ENST00000532560 TRAPPC8Q9Y2L5 1435 aa23.63■■□□□ 1.37
CPSF1-208ENST00000532560 HECW2Q9P2P5 1572 aa23.62■■□□□ 1.37
CPSF1-208ENST00000532560 ZNF777Q9ULD5 760 aaPredicted RBP23.62■■□□□ 1.37
CPSF1-208ENST00000532560 AFAP1Q8N556 730 aa23.6■■□□□ 1.37
CPSF1-208ENST00000532560 KDM4FA0A1W2PPD8 638 aa23.59■■□□□ 1.37
CPSF1-208ENST00000532560 MLH3Q9UHC1 1453 aa23.59■■□□□ 1.37
CPSF1-208ENST00000532560 MYOM3Q5VTT5 1437 aa23.56■■□□□ 1.36
CPSF1-208ENST00000532560 CAMSAP2Q08AD1 1489 aa23.55■■□□□ 1.36
CPSF1-208ENST00000532560 DIP2CQ9Y2E4 1556 aa23.54■■□□□ 1.36
CPSF1-208ENST00000532560 ATP10AO60312 1499 aa23.54■■□□□ 1.36
CPSF1-208ENST00000532560 MBD5Q9P267 1494 aa23.54■■□□□ 1.36
CPSF1-208ENST00000532560 ZNF644Q9H582 1327 aaPredicted RBP23.54■■□□□ 1.36
CPSF1-208ENST00000532560 C9orf84Q5VXU9 1444 aa23.53■■□□□ 1.36
CPSF1-208ENST00000532560 ABCA6Q8N139 1617 aa23.53■■□□□ 1.36
CPSF1-208ENST00000532560 HNRNPMP52272 730 aaKnown RBP eCLIP23.53■■□□□ 1.36
CPSF1-208ENST00000532560 KIDINS220Q9ULH0 1771 aa23.52■■□□□ 1.36
CPSF1-208ENST00000532560 MIA2Q96PC5 1412 aa23.52■■□□□ 1.36
CPSF1-208ENST00000532560 SIGLEC1Q9BZZ2 1709 aa23.51■■□□□ 1.35
CPSF1-208ENST00000532560 REREQ9P2R6 1566 aa23.51■■□□□ 1.35
CPSF1-208ENST00000532560 INO80Q9ULG1 1556 aaPredicted RBP23.51■■□□□ 1.35
CPSF1-208ENST00000532560 BCORL1Q5H9F3 1711 aa23.5■■□□□ 1.35
CPSF1-208ENST00000532560 ATP7AQ04656 1500 aa23.49■■□□□ 1.35
CPSF1-208ENST00000532560 ADAMTSL3P82987 1691 aa23.48■■□□□ 1.35
CPSF1-208ENST00000532560 SPAG9O60271 1321 aaKnown RBP23.47■■□□□ 1.35
CPSF1-208ENST00000532560 CCDC141Q6ZP82 1450 aa23.47■■□□□ 1.35
CPSF1-208ENST00000532560 ARHGEF5Q12774 1597 aa23.47■■□□□ 1.35
CPSF1-208ENST00000532560 ARID4BQ4LE39 1312 aaPredicted RBP23.46■■□□□ 1.35
CPSF1-208ENST00000532560 MYT1LQ9UL68 1186 aa23.45■■□□□ 1.34
CPSF1-208ENST00000532560 RSPH4AQ5TD94 716 aa23.42■■□□□ 1.34
CPSF1-208ENST00000532560 RTEL1-TNFRSF6BF6WH68 1400 aa23.42■■□□□ 1.34
CPSF1-208ENST00000532560 FGD6Q6ZV73 1430 aa23.42■■□□□ 1.34
CPSF1-208ENST00000532560 AGLP35573 1532 aa23.41■■□□□ 1.34
CPSF1-208ENST00000532560 PTPN23Q9H3S7 1636 aa23.41■■□□□ 1.34
CPSF1-208ENST00000532560 MADDQ8WXG6 1647 aa23.4■■□□□ 1.34
CPSF1-208ENST00000532560 TCOF1Q13428 1488 aaKnown RBP23.38■■□□□ 1.33
CPSF1-208ENST00000532560 PLXNC1O60486 1568 aa23.38■■□□□ 1.33
CPSF1-208ENST00000532560 ADGBQ8N7X0 1667 aa23.36■■□□□ 1.33
CPSF1-208ENST00000532560 MAST1Q9Y2H9 1570 aa23.35■■□□□ 1.33
CPSF1-208ENST00000532560 A2MP01023 1474 aa23.34■■□□□ 1.33
CPSF1-208ENST00000532560 PTPRMP28827 1452 aa23.33■■□□□ 1.33
CPSF1-208ENST00000532560 FER1L4A9Z1Z3 1794 aa23.32■■□□□ 1.32
CPSF1-208ENST00000532560 RIMS1Q86UR5 1692 aaKnown RBP23.32■■□□□ 1.32
CPSF1-208ENST00000532560 CROCC2H7BZ55 1655 aa23.31■■□□□ 1.32
CPSF1-208ENST00000532560 SHANK2Q9UPX8 1470 aa23.3■■□□□ 1.32
CPSF1-208ENST00000532560 DNMT1P26358 1616 aaKnown RBP23.3■■□□□ 1.32
CPSF1-208ENST00000532560 TSPY4P0CV99 314 aa23.29■■□□□ 1.32
CPSF1-208ENST00000532560 TSPY10P0CW01 314 aa23.29■■□□□ 1.32
CPSF1-208ENST00000532560 MLECQ14165 292 aa23.29■■□□□ 1.32
CPSF1-208ENST00000532560 ABCC5O15440 1437 aa23.26■■□□□ 1.31
CPSF1-208ENST00000532560 DHX29Q7Z478 1369 aaKnown RBP23.26■■□□□ 1.31
CPSF1-208ENST00000532560 DAPK1P53355 1430 aa23.25■■□□□ 1.31
CPSF1-208ENST00000532560 PPARGC1BQ86YN6 1023 aaKnown RBP23.19■■□□□ 1.3
CPSF1-208ENST00000532560 CNTLNQ9NXG0 1405 aa23.18■■□□□ 1.3
CPSF1-208ENST00000532560 EIF2AK4Q9P2K8 1649 aaKnown RBP23.16■■□□□ 1.3
CPSF1-208ENST00000532560 FAM50AQ14320 339 aaKnown RBP23.16■■□□□ 1.3
CPSF1-208ENST00000532560 DUOX2Q9NRD8 1548 aa23.16■■□□□ 1.3
CPSF1-208ENST00000532560 FAM135AQ9P2D6 1515 aa23.14■■□□□ 1.3
CPSF1-208ENST00000532560 MROH2AA6NES4 1674 aa23.14■■□□□ 1.29
CPSF1-208ENST00000532560 ADGRL2O95490 1459 aa23.14■■□□□ 1.29
CPSF1-208ENST00000532560 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.14■■□□□ 1.29
CPSF1-208ENST00000532560 KIF15Q9NS87 1388 aa23.14■■□□□ 1.29
CPSF1-208ENST00000532560 ESF1Q9H501 851 aaKnown RBP23.13■■□□□ 1.29
CPSF1-208ENST00000532560 PPP6R1Q9UPN7 881 aa23.13■■□□□ 1.29
CPSF1-208ENST00000532560 RNF17Q9BXT8 1623 aaKnown RBP23.12■■□□□ 1.29
CPSF1-208ENST00000532560 C3P01024 1663 aa23.12■■□□□ 1.29
CPSF1-208ENST00000532560 KIF3BO15066 747 aa23.11■■□□□ 1.29
CPSF1-208ENST00000532560 ANKRD30AQ9BXX3 1397 aa23.11■■□□□ 1.29
CPSF1-208ENST00000532560 ERBINQ96RT1 1412 aa23.1■■□□□ 1.29
CPSF1-208ENST00000532560 RRBP1Q9P2E9 1410 aaKnown RBP23.1■■□□□ 1.29
CPSF1-208ENST00000532560 GGT6Q6P531 493 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 319.3 ms