RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NISCHQ9Y2I1 1504 aa36.65■■■■□ 3.46
CPSF1-208ENST00000532560 CCDC180Q9P1Z9 1646 aa32.63■■■□□ 2.81
CPSF1-208ENST00000532560 ABCC9O60706 1549 aa31.82■■■□□ 2.68
CPSF1-208ENST00000532560 RB1CC1Q8TDY2 1594 aa30.67■■■□□ 2.5
CPSF1-208ENST00000532560 NACADO15069 1562 aa30.65■■■□□ 2.5
CPSF1-208ENST00000532560 ZCCHC6Q5VYS8 1495 aaKnown RBP30.57■■■□□ 2.48
CPSF1-208ENST00000532560 MYO15BQ96JP2 1530 aa30.52■■■□□ 2.48
CPSF1-208ENST00000532560 DCAF8L2P0C7V8 631 aa30.46■■■□□ 2.47
CPSF1-208ENST00000532560 DCAF1Q9Y4B6 1507 aa30.37■■■□□ 2.45
CPSF1-208ENST00000532560 UNC13AQ9UPW8 1703 aa29.96■■■□□ 2.39
CPSF1-208ENST00000532560 BICRAQ9NZM4 1560 aa29.74■■■□□ 2.35
CPSF1-208ENST00000532560 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
CPSF1-208ENST00000532560 PABPN1Q86U42 306 aaKnown RBP eCLIP29.68■■■□□ 2.348e-6■□□□□ 8.9
CPSF1-208ENST00000532560 SHROOM4Q9ULL8 1493 aa29.51■■■□□ 2.31
CPSF1-208ENST00000532560 DNAJC5BQ9UF47 199 aa29.14■■■□□ 2.26
CPSF1-208ENST00000532560 EIF4G1Q04637 1599 aaKnown RBP28.96■■■□□ 2.23
CPSF1-208ENST00000532560 CC2D2AQ9P2K1 1620 aa28.82■■■□□ 2.2
CPSF1-208ENST00000532560 CECR2Q9BXF3 1484 aa28.61■■■□□ 2.17
CPSF1-208ENST00000532560 SMARCA4P51532 1647 aa28.45■■■□□ 2.14
CPSF1-208ENST00000532560 BAZ1AQ9NRL2 1556 aaPredicted RBP28.42■■■□□ 2.14
CPSF1-208ENST00000532560 ATAD2BQ9ULI0 1458 aa28.27■■■□□ 2.12
CPSF1-208ENST00000532560 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
CPSF1-208ENST00000532560 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
CPSF1-208ENST00000532560 MROH2BQ7Z745 1585 aa28.23■■■□□ 2.11
CPSF1-208ENST00000532560 PEG3Q9GZU2 1588 aa28.2■■■□□ 2.11
CPSF1-208ENST00000532560 HMGXB3Q12766 1538 aa28.18■■■□□ 2.1
CPSF1-208ENST00000532560 BAZ1BQ9UIG0 1483 aaKnown RBP28.05■■■□□ 2.08
CPSF1-208ENST00000532560 RSF1Q96T23 1441 aaPredicted RBP27.92■■■□□ 2.06
CPSF1-208ENST00000532560 WIZO95785 1651 aa27.91■■■□□ 2.06
CPSF1-208ENST00000532560 TOP2AP11388 1531 aaKnown RBP27.67■■■□□ 2.02
CPSF1-208ENST00000532560 NESP48681 1621 aa27.54■■■□□ 2
CPSF1-208ENST00000532560 LAMC3Q9Y6N6 1575 aa27.53■■■□□ 2
CPSF1-208ENST00000532560 ERCC6Q03468 1493 aa27.44■■□□□ 1.98
CPSF1-208ENST00000532560 CADPSQ9ULU8 1353 aa27.42■■□□□ 1.98
CPSF1-208ENST00000532560 PDS5BQ9NTI5 1447 aa27.32■■□□□ 1.96
CPSF1-208ENST00000532560 CCDC88BA6NC98 1476 aa27.29■■□□□ 1.96
CPSF1-208ENST00000532560 CFTRP13569 1480 aa27.29■■□□□ 1.96
CPSF1-208ENST00000532560 KIF21AQ7Z4S6 1674 aa27.25■■□□□ 1.95
CPSF1-208ENST00000532560 CUX2O14529 1486 aa27.2■■□□□ 1.95
CPSF1-208ENST00000532560 THOC2Q8NI27 1593 aaKnown RBP27.19■■□□□ 1.94
CPSF1-208ENST00000532560 FANCD2Q9BXW9 1451 aa27.12■■□□□ 1.93
CPSF1-208ENST00000532560 PRDM2Q13029 1718 aa27.11■■□□□ 1.93
CPSF1-208ENST00000532560 SUPT5HO00267 1087 aaKnown RBP27.1■■□□□ 1.93
CPSF1-208ENST00000532560 CEP164Q9UPV0 1460 aa27.09■■□□□ 1.93
CPSF1-208ENST00000532560 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
CPSF1-208ENST00000532560 WDR62O43379 1518 aa26.99■■□□□ 1.91
CPSF1-208ENST00000532560 URB2Q14146 1524 aaKnown RBP26.85■■□□□ 1.89
CPSF1-208ENST00000532560 DNAJC5Q9H3Z4 198 aa26.76■■□□□ 1.87
CPSF1-208ENST00000532560 ABCC8Q09428 1581 aa26.7■■□□□ 1.86
CPSF1-208ENST00000532560 TOPBP1Q92547 1522 aa26.69■■□□□ 1.86
CPSF1-208ENST00000532560 DNMBPQ6XZF7 1577 aa26.68■■□□□ 1.86
CPSF1-208ENST00000532560 IFT140Q96RY7 1462 aa26.53■■□□□ 1.84
CPSF1-208ENST00000532560 CUX1P39880 1505 aa26.5■■□□□ 1.83
CPSF1-208ENST00000532560 POLA1P09884 1462 aaPredicted RBP26.47■■□□□ 1.83
CPSF1-208ENST00000532560 TARBP1Q13395 1621 aaKnown RBP26.41■■□□□ 1.82
CPSF1-208ENST00000532560 FGD5Q6ZNL6 1462 aa26.4■■□□□ 1.82
CPSF1-208ENST00000532560 ZNF608Q9ULD9 1512 aaPredicted RBP26.38■■□□□ 1.81
CPSF1-208ENST00000532560 WRNQ14191 1432 aaPredicted RBP eCLIP26.32■■□□□ 1.8
CPSF1-208ENST00000532560 SOGA1O94964 1423 aa26.31■■□□□ 1.8
CPSF1-208ENST00000532560 RAD54L2Q9Y4B4 1467 aa26.31■■□□□ 1.8
CPSF1-208ENST00000532560 EIF4G3O43432 1585 aaKnown RBP26.31■■□□□ 1.8
CPSF1-208ENST00000532560 BIVM-ERCC5R4GMW8 1640 aa26.29■■□□□ 1.8
CPSF1-208ENST00000532560 TOP2BQ02880 1626 aa26.28■■□□□ 1.8
CPSF1-208ENST00000532560 SYNJ1O43426 1573 aa26.26■■□□□ 1.79
CPSF1-208ENST00000532560 WDR97A6NE52 1622 aa26.25■■□□□ 1.79
CPSF1-208ENST00000532560 AQRO60306 1485 aaKnown RBP eCLIP26.21■■□□□ 1.79
CPSF1-208ENST00000532560 ABCA10Q8WWZ4 1543 aa26.17■■□□□ 1.78
CPSF1-208ENST00000532560 TDRD9Q8NDG6 1382 aaKnown RBP26.15■■□□□ 1.78
CPSF1-208ENST00000532560 ABCA5Q8WWZ7 1642 aa26.07■■□□□ 1.76
CPSF1-208ENST00000532560 GRIN2BQ13224 1484 aa26.04■■□□□ 1.76
CPSF1-208ENST00000532560 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
CPSF1-208ENST00000532560 SNAPC4Q5SXM2 1469 aa26.01■■□□□ 1.75
CPSF1-208ENST00000532560 PBRM1Q86U86 1689 aa26.01■■□□□ 1.75
CPSF1-208ENST00000532560 MAGI1Q96QZ7 1491 aaPredicted RBP26■■□□□ 1.75
CPSF1-208ENST00000532560 OSCARQ8IYS5 282 aa25.99■■□□□ 1.75
CPSF1-208ENST00000532560 CHD1O14646 1710 aa25.97■■□□□ 1.75
CPSF1-208ENST00000532560 SYNJ2O15056 1496 aa25.88■■□□□ 1.73
CPSF1-208ENST00000532560 ERICH3Q5RHP9 1530 aa25.86■■□□□ 1.73
CPSF1-208ENST00000532560 ADAMTS12P58397 1594 aa25.83■■□□□ 1.73
CPSF1-208ENST00000532560 FBLN2P98095 1184 aa25.83■■□□□ 1.73
CPSF1-208ENST00000532560 CHMP7Q8WUX9 453 aaPredicted RBP25.8■■□□□ 1.72
CPSF1-208ENST00000532560 KIF27Q86VH2 1401 aa25.77■■□□□ 1.72
CPSF1-208ENST00000532560 FHAD1B1AJZ9 1412 aa25.75■■□□□ 1.71
CPSF1-208ENST00000532560 GRIN2AQ12879 1464 aa25.72■■□□□ 1.71
CPSF1-208ENST00000532560 CLASP1Q7Z460 1538 aa25.71■■□□□ 1.71
CPSF1-208ENST00000532560 IGF1RP08069 1367 aa25.63■■□□□ 1.69
CPSF1-208ENST00000532560 CUL7Q14999 1698 aa25.63■■□□□ 1.69
CPSF1-208ENST00000532560 ARHGEF11O15085 1522 aa25.63■■□□□ 1.69
CPSF1-208ENST00000532560 NUP160Q12769 1436 aa25.63■■□□□ 1.69
CPSF1-208ENST00000532560 TRIM41Q8WV44 630 aa25.62■■□□□ 1.69
CPSF1-208ENST00000532560 RIMBP3CA6NJZ7 1639 aa25.62■■□□□ 1.69
CPSF1-208ENST00000532560 RIMBP3BA6NNM3 1639 aa25.62■■□□□ 1.69
CPSF1-208ENST00000532560 RIMBP3Q9UFD9 1639 aa25.62■■□□□ 1.69
CPSF1-208ENST00000532560 CEP170Q5SW79 1584 aa25.59■■□□□ 1.69
CPSF1-208ENST00000532560 RUSC2Q8N2Y8 1516 aa25.49■■□□□ 1.67
CPSF1-208ENST00000532560 CARMIL1Q5VZK9 1371 aa25.49■■□□□ 1.67
CPSF1-208ENST00000532560 SHROOM2Q13796 1616 aa25.44■■□□□ 1.66
CPSF1-208ENST00000532560 ARAP1Q96P48 1450 aa25.43■■□□□ 1.66
CPSF1-208ENST00000532560 RAPGEF2Q9Y4G8 1499 aa25.36■■□□□ 1.65
CPSF1-208ENST00000532560 KIAA0586Q9BVV6 1533 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms