RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 CADPS2Q86UW7 1296 aa18.13■□□□□ 0.49
CSDE1-213ENST00000530784 C2orf72A6NCS6 295 aa18.12■□□□□ 0.49
CSDE1-213ENST00000530784 KIF3CO14782 793 aa18.11■□□□□ 0.49
CSDE1-213ENST00000530784 TMC2Q8TDI7 906 aa18.11■□□□□ 0.49
CSDE1-213ENST00000530784 NCKAP5LQ9HCH0 1330 aa18.05■□□□□ 0.48
CSDE1-213ENST00000530784 CRISPLD2Q9H0B8 497 aa18.05■□□□□ 0.48
CSDE1-213ENST00000530784 GPHNQ9NQX3 736 aaPredicted RBP18.05■□□□□ 0.48
CSDE1-213ENST00000530784 TSHZ2Q9NRE2 1034 aa18.03■□□□□ 0.48
CSDE1-213ENST00000530784 PDE4AP27815 886 aa18.01■□□□□ 0.47
CSDE1-213ENST00000530784 SNPHO15079 494 aa17.97■□□□□ 0.47
CSDE1-213ENST00000530784 DSG2Q14126 1118 aa17.97■□□□□ 0.47
CSDE1-213ENST00000530784 LARP6Q9BRS8 491 aaKnown RBP17.97■□□□□ 0.47
CSDE1-213ENST00000530784 FOXK1P85037 733 aa17.96■□□□□ 0.47
CSDE1-213ENST00000530784 HOXB3P14651 431 aaPredicted RBP17.95■□□□□ 0.46
CSDE1-213ENST00000530784 FAM163AQ96GL9 167 aaPredicted RBP17.93■□□□□ 0.46
CSDE1-213ENST00000530784 PLPP6Q8IY26 295 aa17.92■□□□□ 0.46
CSDE1-213ENST00000530784 PPP1R15BQ5SWA1 713 aa17.89■□□□□ 0.45
CSDE1-213ENST00000530784 DDX27Q96GQ7 796 aaKnown RBP17.89■□□□□ 0.45
CSDE1-213ENST00000530784 HAP1P54257 671 aaPredicted RBP17.88■□□□□ 0.45
CSDE1-213ENST00000530784 MFSD10Q14728 455 aa17.88■□□□□ 0.45
CSDE1-213ENST00000530784 DOK7Q18PE1 504 aa17.88■□□□□ 0.45
CSDE1-213ENST00000530784 ST18O60284 1047 aa17.84■□□□□ 0.45
CSDE1-213ENST00000530784 LCE2DQ5TA82 110 aaPredicted RBP17.84■□□□□ 0.45
CSDE1-213ENST00000530784 ZNF710Q8N1W2 664 aa17.82■□□□□ 0.44
CSDE1-213ENST00000530784 RIMBP2O15034 1052 aa17.78■□□□□ 0.44
CSDE1-213ENST00000530784 SLC34A2O95436 690 aa17.78■□□□□ 0.44
CSDE1-213ENST00000530784 WDR70Q9NW82 654 aa17.74■□□□□ 0.43
CSDE1-213ENST00000530784 ZSWIM6Q9HCJ5 1215 aa17.73■□□□□ 0.43
CSDE1-213ENST00000530784 ARSIQ5FYB1 569 aa17.72■□□□□ 0.43
CSDE1-213ENST00000530784 GPR153Q6NV75 609 aa17.72■□□□□ 0.43
CSDE1-213ENST00000530784 PTCD2Q8WV60 388 aaKnown RBP17.71■□□□□ 0.43
CSDE1-213ENST00000530784 PCDHGA4Q9Y5G9 962 aa17.71■□□□□ 0.43
CSDE1-213ENST00000530784 HOXB1P14653 301 aaPredicted RBP17.7■□□□□ 0.42
CSDE1-213ENST00000530784 UPF1Q92900 1129 aaKnown RBP eCLIP17.69■□□□□ 0.42
CSDE1-213ENST00000530784 KHSRPQ92945 711 aaKnown RBP eCLIP17.69■□□□□ 0.422e-8■■■■□ 26.7
CSDE1-213ENST00000530784 CAMK2BQ13554 666 aa17.67■□□□□ 0.42
CSDE1-213ENST00000530784 OXER1Q8TDS5 423 aa17.67■□□□□ 0.42
CSDE1-213ENST00000530784 MARVELD3Q96A59 401 aa17.67■□□□□ 0.42
CSDE1-213ENST00000530784 EMILIN3Q9NT22 766 aa17.67■□□□□ 0.42
CSDE1-213ENST00000530784 E2F4Q16254 413 aa17.63■□□□□ 0.41
CSDE1-213ENST00000530784 KDM2AQ9Y2K7 1162 aa17.63■□□□□ 0.41
CSDE1-213ENST00000530784 TBC1D12O60347 775 aa17.61■□□□□ 0.41
CSDE1-213ENST00000530784 NUDT7P0C024 238 aa17.6■□□□□ 0.41
CSDE1-213ENST00000530784 EMP3P54852 163 aa17.59■□□□□ 0.41
CSDE1-213ENST00000530784 POTEGQ6S5H5 508 aa17.57■□□□□ 0.4
CSDE1-213ENST00000530784 POTEMA6NI47 508 aa17.56■□□□□ 0.4
CSDE1-213ENST00000530784 MAP3K9P80192 1104 aa17.56■□□□□ 0.4
CSDE1-213ENST00000530784 VSIG10Q8N0Z9 540 aa17.56■□□□□ 0.4
CSDE1-213ENST00000530784 KDM4FA0A1W2PPD8 638 aa17.54■□□□□ 0.4
CSDE1-213ENST00000530784 DPYSL4O14531 572 aa17.52■□□□□ 0.4
CSDE1-213ENST00000530784 FAM205CA6NFA0 338 aa17.5■□□□□ 0.39
CSDE1-213ENST00000530784 ERBB3P21860 1342 aa17.48■□□□□ 0.39
CSDE1-213ENST00000530784 KCNV2Q8TDN2 545 aa17.48■□□□□ 0.39
CSDE1-213ENST00000530784 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
CSDE1-213ENST00000530784 EVI5O60447 810 aa17.47■□□□□ 0.39
CSDE1-213ENST00000530784 LHX6Q9UPM6 363 aa17.47■□□□□ 0.39
CSDE1-213ENST00000530784 POTEB3A0JP26 581 aa17.46■□□□□ 0.39
CSDE1-213ENST00000530784 POTEBQ6S5H4 581 aa17.46■□□□□ 0.39
CSDE1-213ENST00000530784 HS3ST6Q96QI5 342 aa17.44■□□□□ 0.38
CSDE1-213ENST00000530784 ARIH1Q9Y4X5 557 aaPredicted RBP17.44■□□□□ 0.38
CSDE1-213ENST00000530784 VARS2Q5ST30 1063 aaKnown RBP17.43■□□□□ 0.38
CSDE1-213ENST00000530784 ANO8Q9HCE9 1232 aaPredicted RBP17.42■□□□□ 0.38
CSDE1-213ENST00000530784 P3H3Q8IVL6 736 aa17.38■□□□□ 0.37
CSDE1-213ENST00000530784 ARHGEF1Q92888 912 aaKnown RBP17.38■□□□□ 0.37
CSDE1-213ENST00000530784 PDIA6Q15084 440 aa17.36■□□□□ 0.37
CSDE1-213ENST00000530784 SPDYE16A6NNV3 312 aaPredicted RBP17.33■□□□□ 0.36
CSDE1-213ENST00000530784 PSDA5PKW4 1024 aaPredicted RBP17.3■□□□□ 0.36
CSDE1-213ENST00000530784 SLC24A1O60721 1099 aa17.3■□□□□ 0.36
CSDE1-213ENST00000530784 CDAN1Q8IWY9 1227 aa17.29■□□□□ 0.36
CSDE1-213ENST00000530784 ZNF454Q8N9F8 522 aa17.29■□□□□ 0.36
CSDE1-213ENST00000530784 FOSBP53539 338 aa17.28■□□□□ 0.36
CSDE1-213ENST00000530784 ZNF687Q8N1G0 1237 aa17.27■□□□□ 0.36
CSDE1-213ENST00000530784 JPH4Q96JJ6 628 aa17.26■□□□□ 0.35
CSDE1-213ENST00000530784 PTGER2P43116 358 aa17.25■□□□□ 0.35
CSDE1-213ENST00000530784 PPP4R3BQ5MIZ7 849 aa17.25■□□□□ 0.35
CSDE1-213ENST00000530784 DDX12PQ92771 950 aa17.25■□□□□ 0.35
CSDE1-213ENST00000530784 PCDHGA10Q9Y5H3 936 aa17.23■□□□□ 0.35
CSDE1-213ENST00000530784 PHF14O94880 888 aa17.2■□□□□ 0.34
CSDE1-213ENST00000530784 ZDHHC16Q969W1 377 aa17.18■□□□□ 0.34
CSDE1-213ENST00000530784 PCDH10Q9P2E7 1040 aa17.18■□□□□ 0.34
CSDE1-213ENST00000530784 GRXCR2A6NFK2 248 aa17.17■□□□□ 0.34
CSDE1-213ENST00000530784 POTEEQ6S8J3 1075 aa17.17■□□□□ 0.34
CSDE1-213ENST00000530784 KRTAP3-3Q9BYR6 98 aa17.16■□□□□ 0.34
CSDE1-213ENST00000530784 KRTAP3-2Q9BYR7 98 aa17.16■□□□□ 0.34
CSDE1-213ENST00000530784 SEMA3EO15041 775 aa17.15■□□□□ 0.34
CSDE1-213ENST00000530784 TYW1BQ6NUM6 668 aa17.15■□□□□ 0.34
CSDE1-213ENST00000530784 ADAM33Q9BZ11 813 aa17.15■□□□□ 0.34
CSDE1-213ENST00000530784 AXIN2Q9Y2T1 843 aa17.15■□□□□ 0.34
CSDE1-213ENST00000530784 MLLT3P42568 568 aaPredicted RBP17.14■□□□□ 0.33
CSDE1-213ENST00000530784 EPAS1Q99814 870 aa17.14■□□□□ 0.33
CSDE1-213ENST00000530784 NBR1Q14596 966 aa17.13■□□□□ 0.33
CSDE1-213ENST00000530784 FBXW7Q969H0 707 aa17.12■□□□□ 0.33
CSDE1-213ENST00000530784 BCL2L12Q9HB09 334 aa17.12■□□□□ 0.33
CSDE1-213ENST00000530784 PBX2P40425 430 aa17.11■□□□□ 0.33
CSDE1-213ENST00000530784 ARHGAP33O14559 1287 aa17.09■□□□□ 0.33
CSDE1-213ENST00000530784 RBM33Q96EV2 1170 aaKnown RBP17.09■□□□□ 0.33
CSDE1-213ENST00000530784 PSEN2P49810 448 aa17.08■□□□□ 0.32
CSDE1-213ENST00000530784 KCNK17Q96T54 332 aa17.08■□□□□ 0.32
CSDE1-213ENST00000530784 OSBPP22059 807 aa17.07■□□□□ 0.32
CSDE1-213ENST00000530784 PRIM1P49642 420 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms