RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CADPS2Q86UW7 1296 aa11.2□□□□□ -0.62
CD44-217ENST00000525348 C2orf72A6NCS6 295 aa11.19□□□□□ -0.62
CD44-217ENST00000525348 LCE2DQ5TA82 110 aaPredicted RBP11.16□□□□□ -0.62
CD44-217ENST00000525348 NCKAP5LQ9HCH0 1330 aa11.15□□□□□ -0.62
CD44-217ENST00000525348 HOXB3P14651 431 aaPredicted RBP11.14□□□□□ -0.63
CD44-217ENST00000525348 CRISPLD2Q9H0B8 497 aa11.14□□□□□ -0.63
CD44-217ENST00000525348 TMC2Q8TDI7 906 aa11.13□□□□□ -0.63
CD44-217ENST00000525348 GPHNQ9NQX3 736 aaPredicted RBP11.12□□□□□ -0.63
CD44-217ENST00000525348 PLCB2Q00722 1185 aa11.1□□□□□ -0.63
CD44-217ENST00000525348 FAM163AQ96GL9 167 aaPredicted RBP11.1□□□□□ -0.63
CD44-217ENST00000525348 DSG2Q14126 1118 aa11.09□□□□□ -0.63
CD44-217ENST00000525348 TSHZ2Q9NRE2 1034 aa11.09□□□□□ -0.63
CD44-217ENST00000525348 SNPHO15079 494 aa11.07□□□□□ -0.64
CD44-217ENST00000525348 ST18O60284 1047 aa11.07□□□□□ -0.64
CD44-217ENST00000525348 FOXK1P85037 733 aa11.07□□□□□ -0.64
CD44-217ENST00000525348 PDE4AP27815 886 aa11.05□□□□□ -0.64
CD44-217ENST00000525348 PLPP6Q8IY26 295 aa11.05□□□□□ -0.64
CD44-217ENST00000525348 LARP6Q9BRS8 491 aaKnown RBP11.05□□□□□ -0.64
CD44-217ENST00000525348 MFSD10Q14728 455 aa11.04□□□□□ -0.64
CD44-217ENST00000525348 DOK7Q18PE1 504 aa11.02□□□□□ -0.65
CD44-217ENST00000525348 PPP1R15BQ5SWA1 713 aa11.02□□□□□ -0.65
CD44-217ENST00000525348 DDX27Q96GQ7 796 aaKnown RBP10.99□□□□□ -0.65
CD44-217ENST00000525348 SLC34A2O95436 690 aa10.98□□□□□ -0.65
CD44-217ENST00000525348 GPR153Q6NV75 609 aa10.97□□□□□ -0.65
CD44-217ENST00000525348 ZNF710Q8N1W2 664 aa10.97□□□□□ -0.65
CD44-217ENST00000525348 KHSRPQ92945 711 aaKnown RBP eCLIP10.97□□□□□ -0.65
CD44-217ENST00000525348 MARVELD3Q96A59 401 aa10.96□□□□□ -0.65
CD44-217ENST00000525348 HOXB1P14653 301 aaPredicted RBP10.95□□□□□ -0.66
CD44-217ENST00000525348 ARSIQ5FYB1 569 aa10.95□□□□□ -0.66
CD44-217ENST00000525348 ZSWIM6Q9HCJ5 1215 aa10.94□□□□□ -0.66
CD44-217ENST00000525348 PCDHGA4Q9Y5G9 962 aa10.94□□□□□ -0.66
CD44-217ENST00000525348 RIMBP2O15034 1052 aa10.93□□□□□ -0.66
CD44-217ENST00000525348 EMILIN3Q9NT22 766 aa10.93□□□□□ -0.66
CD44-217ENST00000525348 POTEMA6NI47 508 aa10.92□□□□□ -0.66
CD44-217ENST00000525348 POTEGQ6S5H5 508 aa10.92□□□□□ -0.66
CD44-217ENST00000525348 PTCD2Q8WV60 388 aaKnown RBP10.92□□□□□ -0.66
CD44-217ENST00000525348 HAP1P54257 671 aaPredicted RBP10.91□□□□□ -0.66
CD44-217ENST00000525348 OXER1Q8TDS5 423 aa10.91□□□□□ -0.66
CD44-217ENST00000525348 UPF1Q92900 1129 aaKnown RBP eCLIP10.91□□□□□ -0.66
CD44-217ENST00000525348 CAMK2BQ13554 666 aa10.9□□□□□ -0.66
CD44-217ENST00000525348 KDM4FA0A1W2PPD8 638 aa10.88□□□□□ -0.67
CD44-217ENST00000525348 POTEB3A0JP26 581 aa10.88□□□□□ -0.67
CD44-217ENST00000525348 NUDT7P0C024 238 aa10.88□□□□□ -0.67
CD44-217ENST00000525348 EMP3P54852 163 aa10.88□□□□□ -0.67
CD44-217ENST00000525348 POTEBQ6S5H4 581 aa10.88□□□□□ -0.67
CD44-217ENST00000525348 FAM205CA6NFA0 338 aa10.83□□□□□ -0.68
CD44-217ENST00000525348 KDM2AQ9Y2K7 1162 aa10.83□□□□□ -0.68
CD44-217ENST00000525348 WDR70Q9NW82 654 aa10.82□□□□□ -0.68
CD44-217ENST00000525348 E2F4Q16254 413 aa10.81□□□□□ -0.68
CD44-217ENST00000525348 HS3ST6Q96QI5 342 aa10.81□□□□□ -0.68
CD44-217ENST00000525348 LHX6Q9UPM6 363 aa10.81□□□□□ -0.68
CD44-217ENST00000525348 ZNF316A6NFI3 1004 aaPredicted RBP10.8□□□□□ -0.68
CD44-217ENST00000525348 DPYSL4O14531 572 aa10.8□□□□□ -0.68
CD44-217ENST00000525348 TBC1D12O60347 775 aa10.79□□□□□ -0.68
CD44-217ENST00000525348 ERBB3P21860 1342 aa10.79□□□□□ -0.68
CD44-217ENST00000525348 VARS2Q5ST30 1063 aaKnown RBP10.78□□□□□ -0.68
CD44-217ENST00000525348 MAP3K9P80192 1104 aa10.77□□□□□ -0.69
CD44-217ENST00000525348 EVI5O60447 810 aa10.76□□□□□ -0.69
CD44-217ENST00000525348 KCNV2Q8TDN2 545 aa10.76□□□□□ -0.69
CD44-217ENST00000525348 ANO8Q9HCE9 1232 aaPredicted RBP10.75□□□□□ -0.69
CD44-217ENST00000525348 ARIH1Q9Y4X5 557 aaPredicted RBP10.74□□□□□ -0.69
CD44-217ENST00000525348 CDAN1Q8IWY9 1227 aa10.73□□□□□ -0.69
CD44-217ENST00000525348 VSIG10Q8N0Z9 540 aa10.71□□□□□ -0.69
CD44-217ENST00000525348 PDIA6Q15084 440 aa10.7□□□□□ -0.7
CD44-217ENST00000525348 KRTAP3-3Q9BYR6 98 aa10.69□□□□□ -0.7
CD44-217ENST00000525348 KRTAP3-2Q9BYR7 98 aa10.69□□□□□ -0.7
CD44-217ENST00000525348 POTEEQ6S8J3 1075 aa10.68□□□□□ -0.7
CD44-217ENST00000525348 ZNF687Q8N1G0 1237 aa10.68□□□□□ -0.7
CD44-217ENST00000525348 FOSBP53539 338 aa10.67□□□□□ -0.7
CD44-217ENST00000525348 ZNF454Q8N9F8 522 aa10.66□□□□□ -0.7
CD44-217ENST00000525348 ARHGEF1Q92888 912 aaKnown RBP10.65□□□□□ -0.7
CD44-217ENST00000525348 JPH4Q96JJ6 628 aa10.65□□□□□ -0.7
CD44-217ENST00000525348 SPDYE16A6NNV3 312 aaPredicted RBP10.64□□□□□ -0.71
CD44-217ENST00000525348 PSDA5PKW4 1024 aaPredicted RBP10.63□□□□□ -0.71
CD44-217ENST00000525348 PTGER2P43116 358 aa10.63□□□□□ -0.71
CD44-217ENST00000525348 PPP4R3BQ5MIZ7 849 aa10.63□□□□□ -0.71
CD44-217ENST00000525348 DDX12PQ92771 950 aa10.63□□□□□ -0.71
CD44-217ENST00000525348 PCDH10Q9P2E7 1040 aa10.63□□□□□ -0.71
CD44-217ENST00000525348 PCDHGA10Q9Y5H3 936 aa10.63□□□□□ -0.71
CD44-217ENST00000525348 P3H3Q8IVL6 736 aa10.62□□□□□ -0.71
CD44-217ENST00000525348 AXIN2Q9Y2T1 843 aa10.62□□□□□ -0.71
CD44-217ENST00000525348 ADAM33Q9BZ11 813 aa10.6□□□□□ -0.71
CD44-217ENST00000525348 PHF14O94880 888 aa10.59□□□□□ -0.71
CD44-217ENST00000525348 PRIM1P49642 420 aaKnown RBP10.58□□□□□ -0.72
CD44-217ENST00000525348 ZDHHC16Q969W1 377 aa10.58□□□□□ -0.72
CD44-217ENST00000525348 MLLT3P42568 568 aaPredicted RBP10.57□□□□□ -0.72
CD44-217ENST00000525348 PSEN2P49810 448 aa10.57□□□□□ -0.72
CD44-217ENST00000525348 BCL2L12Q9HB09 334 aa10.56□□□□□ -0.72
CD44-217ENST00000525348 GRXCR2A6NFK2 248 aa10.55□□□□□ -0.72
CD44-217ENST00000525348 PBX2P40425 430 aa10.55□□□□□ -0.72
CD44-217ENST00000525348 DMRTA1Q5VZB9 504 aa10.55□□□□□ -0.72
CD44-217ENST00000525348 TYW1BQ6NUM6 668 aa10.55□□□□□ -0.72
CD44-217ENST00000525348 ARHGAP33O14559 1287 aa10.54□□□□□ -0.72
CD44-217ENST00000525348 SEMA3EO15041 775 aa10.54□□□□□ -0.72
CD44-217ENST00000525348 NBR1Q14596 966 aa10.54□□□□□ -0.72
CD44-217ENST00000525348 KCNK17Q96T54 332 aa10.54□□□□□ -0.72
CD44-217ENST00000525348 EPAS1Q99814 870 aa10.54□□□□□ -0.72
CD44-217ENST00000525348 LSM11P83369 360 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD44-217ENST00000525348 RBM33Q96EV2 1170 aaKnown RBP10.53□□□□□ -0.72
CD44-217ENST00000525348 OSBPP22059 807 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms