RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 LOC105371045A0A1W2PR82 267 aa27.57■■■□□ 2
CCNC-213ENST00000523541 MAGI2Q86UL8 1455 aa27.57■■■□□ 2
CCNC-213ENST00000523541 ARHGEF40Q8TER5 1519 aa27.55■■■□□ 2
CCNC-213ENST00000523541 ZMYM4Q5VZL5 1548 aa27.51■■■□□ 2
CCNC-213ENST00000523541 MYT1LQ9UL68 1186 aa27.51■■□□□ 1.99
CCNC-213ENST00000523541 ZFYVE16Q7Z3T8 1539 aa27.51■■□□□ 1.99
CCNC-213ENST00000523541 POGZQ7Z3K3 1410 aa27.5■■□□□ 1.99
CCNC-213ENST00000523541 MTUS2Q5JR59 1369 aa27.48■■□□□ 1.99
CCNC-213ENST00000523541 ZNF518AQ6AHZ1 1483 aa27.45■■□□□ 1.99
CCNC-213ENST00000523541 YEATS2Q9ULM3 1422 aa27.45■■□□□ 1.98
CCNC-213ENST00000523541 BCORL1Q5H9F3 1711 aa27.44■■□□□ 1.98
CCNC-213ENST00000523541 PREX2Q70Z35 1606 aa27.43■■□□□ 1.98
CCNC-213ENST00000523541 CDC42BPBQ9Y5S2 1711 aa27.42■■□□□ 1.98
CCNC-213ENST00000523541 ADAMTSL3P82987 1691 aa27.42■■□□□ 1.98
CCNC-213ENST00000523541 AFAP1Q8N556 730 aa27.4■■□□□ 1.98
CCNC-213ENST00000523541 GPATCH8Q9UKJ3 1502 aaKnown RBP27.4■■□□□ 1.98
CCNC-213ENST00000523541 MLECQ14165 292 aa27.39■■□□□ 1.98
CCNC-213ENST00000523541 ZNF777Q9ULD5 760 aaPredicted RBP27.39■■□□□ 1.98
CCNC-213ENST00000523541 MADDQ8WXG6 1647 aa27.38■■□□□ 1.97
CCNC-213ENST00000523541 CCNB3Q8WWL7 1395 aa27.38■■□□□ 1.97
CCNC-213ENST00000523541 VPS8Q8N3P4 1428 aa27.38■■□□□ 1.97
CCNC-213ENST00000523541 HECW2Q9P2P5 1572 aa27.38■■□□□ 1.97
CCNC-213ENST00000523541 PTPRMP28827 1452 aa27.38■■□□□ 1.97
CCNC-213ENST00000523541 CFDP1Q9UEE9 299 aaPredicted RBP27.36■■□□□ 1.97
CCNC-213ENST00000523541 ATP10AO60312 1499 aa27.36■■□□□ 1.97
CCNC-213ENST00000523541 CDC42BPAQ5VT25 1732 aa27.36■■□□□ 1.97
CCNC-213ENST00000523541 PLPPR3Q6T4P5 718 aa27.35■■□□□ 1.97
CCNC-213ENST00000523541 KDM5CP41229 1560 aa27.35■■□□□ 1.97
CCNC-213ENST00000523541 EHBP1L1Q8N3D4 1523 aa27.34■■□□□ 1.97
CCNC-213ENST00000523541 MLH3Q9UHC1 1453 aa27.33■■□□□ 1.97
CCNC-213ENST00000523541 RIMS1Q86UR5 1692 aaKnown RBP27.33■■□□□ 1.97
CCNC-213ENST00000523541 ABCC1P33527 1531 aa27.32■■□□□ 1.96
CCNC-213ENST00000523541 C9orf84Q5VXU9 1444 aa27.32■■□□□ 1.96
CCNC-213ENST00000523541 KIAA1107Q9UPP5 1409 aa27.32■■□□□ 1.96
CCNC-213ENST00000523541 PLEKHH2Q8IVE3 1493 aa27.32■■□□□ 1.96
CCNC-213ENST00000523541 ARHGEF12Q9NZN5 1544 aa27.29■■□□□ 1.96
CCNC-213ENST00000523541 ITSN2Q9NZM3 1697 aa27.29■■□□□ 1.96
CCNC-213ENST00000523541 TRAPPC8Q9Y2L5 1435 aa27.28■■□□□ 1.96
CCNC-213ENST00000523541 SIGLEC1Q9BZZ2 1709 aa27.27■■□□□ 1.96
CCNC-213ENST00000523541 MAP3K1Q13233 1512 aa27.26■■□□□ 1.95
CCNC-213ENST00000523541 HNRNPMP52272 730 aaKnown RBP eCLIP27.23■■□□□ 1.958e-10■■■■□ 20.8
CCNC-213ENST00000523541 TIAM1Q13009 1591 aa27.22■■□□□ 1.95
CCNC-213ENST00000523541 SAMD9LQ8IVG5 1584 aa27.22■■□□□ 1.95
CCNC-213ENST00000523541 FER1L4A9Z1Z3 1794 aa27.22■■□□□ 1.95
CCNC-213ENST00000523541 SYCP2Q9BX26 1530 aa27.21■■□□□ 1.95
CCNC-213ENST00000523541 DIP2CQ9Y2E4 1556 aa27.21■■□□□ 1.95
CCNC-213ENST00000523541 REREQ9P2R6 1566 aa27.2■■□□□ 1.94
CCNC-213ENST00000523541 SPAG9O60271 1321 aaKnown RBP27.19■■□□□ 1.94
CCNC-213ENST00000523541 RSPH4AQ5TD94 716 aa27.19■■□□□ 1.94
CCNC-213ENST00000523541 ABCA6Q8N139 1617 aa27.19■■□□□ 1.94
CCNC-213ENST00000523541 NCOA2Q15596 1464 aa27.19■■□□□ 1.94
CCNC-213ENST00000523541 LRRC9Q6ZRR7 1453 aa27.19■■□□□ 1.94
CCNC-213ENST00000523541 SUPT6HQ7KZ85 1726 aaKnown RBP27.16■■□□□ 1.94
CCNC-213ENST00000523541 APLP2Q06481 763 aa27.15■■□□□ 1.94
CCNC-213ENST00000523541 ESF1Q9H501 851 aaKnown RBP27.14■■□□□ 1.94
CCNC-213ENST00000523541 AGLP35573 1532 aa27.13■■□□□ 1.93
CCNC-213ENST00000523541 ZNF644Q9H582 1327 aaPredicted RBP27.12■■□□□ 1.93
CCNC-213ENST00000523541 KIDINS220Q9ULH0 1771 aa27.12■■□□□ 1.93
CCNC-213ENST00000523541 MBD5Q9P267 1494 aa27.1■■□□□ 1.93
CCNC-213ENST00000523541 KANK4Q5T7N3 995 aaPredicted RBP27.09■■□□□ 1.93
CCNC-213ENST00000523541 RTEL1-TNFRSF6BF6WH68 1400 aa27.07■■□□□ 1.92
CCNC-213ENST00000523541 ATP7AQ04656 1500 aa27.06■■□□□ 1.92
CCNC-213ENST00000523541 LMTK3Q96Q04 1460 aa27.05■■□□□ 1.92
CCNC-213ENST00000523541 CEBPAP49715 358 aaPredicted RBP27.04■■□□□ 1.92
CCNC-213ENST00000523541 MIA2Q96PC5 1412 aa27.02■■□□□ 1.92
CCNC-213ENST00000523541 TSPY4P0CV99 314 aa27■■□□□ 1.91
CCNC-213ENST00000523541 TSPY10P0CW01 314 aa27■■□□□ 1.91
CCNC-213ENST00000523541 HSPA2P54652 639 aa27■■□□□ 1.91
CCNC-213ENST00000523541 INO80Q9ULG1 1556 aaPredicted RBP27■■□□□ 1.91
CCNC-213ENST00000523541 CAMSAP2Q08AD1 1489 aa27■■□□□ 1.91
CCNC-213ENST00000523541 PPP6R1Q9UPN7 881 aa26.99■■□□□ 1.91
CCNC-213ENST00000523541 A2MP01023 1474 aa26.99■■□□□ 1.91
CCNC-213ENST00000523541 CCDC141Q6ZP82 1450 aa26.99■■□□□ 1.91
CCNC-213ENST00000523541 MYOM3Q5VTT5 1437 aa26.97■■□□□ 1.91
CCNC-213ENST00000523541 CNTLNQ9NXG0 1405 aa26.97■■□□□ 1.91
CCNC-213ENST00000523541 DHX29Q7Z478 1369 aaKnown RBP26.94■■□□□ 1.9
CCNC-213ENST00000523541 ARHGEF5Q12774 1597 aa26.93■■□□□ 1.9
CCNC-213ENST00000523541 PREX1Q8TCU6 1659 aa26.92■■□□□ 1.9
CCNC-213ENST00000523541 PLXNC1O60486 1568 aa26.92■■□□□ 1.9
CCNC-213ENST00000523541 ADGBQ8N7X0 1667 aa26.91■■□□□ 1.9
CCNC-213ENST00000523541 C3P01024 1663 aa26.9■■□□□ 1.9
CCNC-213ENST00000523541 GGT6Q6P531 493 aa26.9■■□□□ 1.9
CCNC-213ENST00000523541 UHRF1BP1Q6BDS2 1440 aa26.89■■□□□ 1.89
CCNC-213ENST00000523541 SETD1BQ9UPS6 1966 aaKnown RBP26.84■■□□□ 1.89
CCNC-213ENST00000523541 ILDR1Q86SU0 546 aaPredicted RBP26.84■■□□□ 1.89
CCNC-213ENST00000523541 ZMYM3Q14202 1370 aa26.82■■□□□ 1.88
CCNC-213ENST00000523541 CLTCQ00610 1675 aaKnown RBP26.81■■□□□ 1.88
CCNC-213ENST00000523541 MROH2AA6NES4 1674 aa26.79■■□□□ 1.88
CCNC-213ENST00000523541 MAST1Q9Y2H9 1570 aa26.79■■□□□ 1.88
CCNC-213ENST00000523541 KIF3BO15066 747 aa26.78■■□□□ 1.88
CCNC-213ENST00000523541 NPATQ14207 1427 aa26.78■■□□□ 1.88
CCNC-213ENST00000523541 FGD6Q6ZV73 1430 aa26.76■■□□□ 1.87
CCNC-213ENST00000523541 FAM135AQ9P2D6 1515 aa26.74■■□□□ 1.87
CCNC-213ENST00000523541 TCOF1Q13428 1488 aaKnown RBP26.73■■□□□ 1.87
CCNC-213ENST00000523541 PTPN23Q9H3S7 1636 aa26.71■■□□□ 1.87
CCNC-213ENST00000523541 SHANK2Q9UPX8 1470 aa26.7■■□□□ 1.87
CCNC-213ENST00000523541 ABCC5O15440 1437 aa26.7■■□□□ 1.86
CCNC-213ENST00000523541 DMRT2Q9Y5R5 561 aa26.69■■□□□ 1.86
CCNC-213ENST00000523541 WASHC2CQ9Y4E1 1318 aa26.68■■□□□ 1.86
CCNC-213ENST00000523541 DAPK1P53355 1430 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms