RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-222ENST00000520948 MYO5CQ9NQX4 1742 aa29.03■■■□□ 2.24
VEGFA-222ENST00000520948 PCF11O94913 1555 aaKnown RBP29.03■■■□□ 2.24
VEGFA-222ENST00000520948 PLCH2O75038 1416 aa29.03■■■□□ 2.24
VEGFA-222ENST00000520948 SCAPERQ9BY12 1400 aa29.01■■■□□ 2.23
VEGFA-222ENST00000520948 KIF14Q15058 1648 aa29.01■■■□□ 2.23
VEGFA-222ENST00000520948 POGZQ7Z3K3 1410 aa29■■■□□ 2.23
VEGFA-222ENST00000520948 LMTK3Q96Q04 1460 aa28.99■■■□□ 2.23
VEGFA-222ENST00000520948 CASKIN1Q8WXD9 1431 aa28.98■■■□□ 2.23
VEGFA-222ENST00000520948 PLPPR3Q6T4P5 718 aa28.98■■■□□ 2.23
VEGFA-222ENST00000520948 MAGI2Q86UL8 1455 aa28.97■■■□□ 2.23
VEGFA-222ENST00000520948 LRRIQ1Q96JM4 1722 aa28.97■■■□□ 2.23
VEGFA-222ENST00000520948 MLECQ14165 292 aa28.93■■■□□ 2.22
VEGFA-222ENST00000520948 FER1L4A9Z1Z3 1794 aa28.93■■■□□ 2.22
VEGFA-222ENST00000520948 CDK11AQ9UQ88 783 aaPredicted RBP28.91■■■□□ 2.22
VEGFA-222ENST00000520948 EFCAB2Q5VUJ9 269 aa28.9■■■□□ 2.22
VEGFA-222ENST00000520948 FYCO1Q9BQS8 1478 aa28.9■■■□□ 2.22
VEGFA-222ENST00000520948 TROQ12816 1431 aaPredicted RBP28.89■■■□□ 2.22
VEGFA-222ENST00000520948 ARHGAP5Q13017 1502 aa28.88■■■□□ 2.21
VEGFA-222ENST00000520948 ATP10AO60312 1499 aa28.85■■■□□ 2.21
VEGFA-222ENST00000520948 HSPA2P54652 639 aa28.84■■■□□ 2.21
VEGFA-222ENST00000520948 C9orf84Q5VXU9 1444 aa28.84■■■□□ 2.21
VEGFA-222ENST00000520948 VPS8Q8N3P4 1428 aa28.84■■■□□ 2.21
VEGFA-222ENST00000520948 ZNF518AQ6AHZ1 1483 aa28.81■■■□□ 2.2
VEGFA-222ENST00000520948 FBXO41Q8TF61 875 aa28.81■■■□□ 2.2
VEGFA-222ENST00000520948 CDC42BPBQ9Y5S2 1711 aa28.8■■■□□ 2.2
VEGFA-222ENST00000520948 ARHGEF12Q9NZN5 1544 aa28.8■■■□□ 2.2
VEGFA-222ENST00000520948 CCDC18Q5T9S5 1454 aa28.79■■■□□ 2.2
VEGFA-222ENST00000520948 KDM5CP41229 1560 aa28.79■■■□□ 2.2
VEGFA-222ENST00000520948 AFAP1Q8N556 730 aa28.77■■■□□ 2.2
VEGFA-222ENST00000520948 PREX2Q70Z35 1606 aa28.76■■■□□ 2.19
VEGFA-222ENST00000520948 MYT1LQ9UL68 1186 aa28.74■■■□□ 2.19
VEGFA-222ENST00000520948 DIP2CQ9Y2E4 1556 aa28.73■■■□□ 2.19
VEGFA-222ENST00000520948 ABCA6Q8N139 1617 aa28.71■■■□□ 2.19
VEGFA-222ENST00000520948 PREX1Q8TCU6 1659 aa28.69■■■□□ 2.18
VEGFA-222ENST00000520948 ITSN2Q9NZM3 1697 aa28.69■■■□□ 2.18
VEGFA-222ENST00000520948 ABCC1P33527 1531 aa28.69■■■□□ 2.18
VEGFA-222ENST00000520948 CEBPAP49715 358 aaPredicted RBP28.68■■■□□ 2.18
VEGFA-222ENST00000520948 CDC42BPAQ5VT25 1732 aa28.67■■■□□ 2.18
VEGFA-222ENST00000520948 TRAPPC8Q9Y2L5 1435 aa28.65■■■□□ 2.18
VEGFA-222ENST00000520948 REREQ9P2R6 1566 aa28.64■■■□□ 2.18
VEGFA-222ENST00000520948 MLH3Q9UHC1 1453 aa28.63■■■□□ 2.17
VEGFA-222ENST00000520948 MAP3K1Q13233 1512 aa28.6■■■□□ 2.17
VEGFA-222ENST00000520948 TIAM1Q13009 1591 aa28.58■■■□□ 2.17
VEGFA-222ENST00000520948 KIDINS220Q9ULH0 1771 aa28.58■■■□□ 2.17
VEGFA-222ENST00000520948 C3P01024 1663 aa28.56■■■□□ 2.16
VEGFA-222ENST00000520948 SAMD9LQ8IVG5 1584 aa28.54■■■□□ 2.16
VEGFA-222ENST00000520948 AGLP35573 1532 aa28.53■■■□□ 2.16
VEGFA-222ENST00000520948 ZNF777Q9ULD5 760 aaPredicted RBP28.53■■■□□ 2.16
VEGFA-222ENST00000520948 UHRF1BP1Q6BDS2 1440 aa28.52■■■□□ 2.16
VEGFA-222ENST00000520948 SYCP2Q9BX26 1530 aa28.51■■■□□ 2.15
VEGFA-222ENST00000520948 STRCQ7RTU9 1775 aa28.51■■■□□ 2.15
VEGFA-222ENST00000520948 MTUS2Q5JR59 1369 aa28.5■■■□□ 2.15
VEGFA-222ENST00000520948 EHBP1L1Q8N3D4 1523 aa28.48■■■□□ 2.15
VEGFA-222ENST00000520948 GPATCH8Q9UKJ3 1502 aaKnown RBP28.48■■■□□ 2.15
VEGFA-222ENST00000520948 CERKQ8TCT0 537 aa28.48■■■□□ 2.15
VEGFA-222ENST00000520948 SETD1BQ9UPS6 1966 aaKnown RBP28.48■■■□□ 2.15
VEGFA-222ENST00000520948 LRRC9Q6ZRR7 1453 aa28.47■■■□□ 2.15
VEGFA-222ENST00000520948 KANK4Q5T7N3 995 aaPredicted RBP28.47■■■□□ 2.15
VEGFA-222ENST00000520948 ESF1Q9H501 851 aaKnown RBP28.47■■■□□ 2.15
VEGFA-222ENST00000520948 APLP2Q06481 763 aa28.43■■■□□ 2.14
VEGFA-222ENST00000520948 SUPT6HQ7KZ85 1726 aaKnown RBP28.43■■■□□ 2.14
VEGFA-222ENST00000520948 HNRNPMP52272 730 aaKnown RBP eCLIP28.42■■■□□ 2.141e-12■■■■■ 34.3
VEGFA-222ENST00000520948 SPAG9O60271 1321 aaKnown RBP28.4■■■□□ 2.14
VEGFA-222ENST00000520948 ATP7AQ04656 1500 aa28.38■■■□□ 2.13
VEGFA-222ENST00000520948 CNTLNQ9NXG0 1405 aa28.38■■■□□ 2.13
VEGFA-222ENST00000520948 CCNB3Q8WWL7 1395 aa28.37■■■□□ 2.13
VEGFA-222ENST00000520948 INO80Q9ULG1 1556 aaPredicted RBP28.37■■■□□ 2.13
VEGFA-222ENST00000520948 CFDP1Q9UEE9 299 aaPredicted RBP28.37■■■□□ 2.13
VEGFA-222ENST00000520948 DMRT2Q9Y5R5 561 aa28.36■■■□□ 2.13
VEGFA-222ENST00000520948 MROH2AA6NES4 1674 aa28.35■■■□□ 2.13
VEGFA-222ENST00000520948 NCOA2Q15596 1464 aa28.34■■■□□ 2.13
VEGFA-222ENST00000520948 PLEKHH2Q8IVE3 1493 aa28.34■■■□□ 2.13
VEGFA-222ENST00000520948 KIAA1107Q9UPP5 1409 aa28.33■■■□□ 2.13
VEGFA-222ENST00000520948 PLXNC1O60486 1568 aa28.32■■■□□ 2.12
VEGFA-222ENST00000520948 CLTCQ00610 1675 aaKnown RBP28.32■■■□□ 2.12
VEGFA-222ENST00000520948 A2MP01023 1474 aa28.29■■■□□ 2.12
VEGFA-222ENST00000520948 PTPRTO14522 1441 aa28.27■■■□□ 2.12
VEGFA-222ENST00000520948 ZMYM3Q14202 1370 aa28.26■■■□□ 2.12
VEGFA-222ENST00000520948 ZNF644Q9H582 1327 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-222ENST00000520948 ADGBQ8N7X0 1667 aa28.25■■■□□ 2.11
VEGFA-222ENST00000520948 NPATQ14207 1427 aa28.25■■■□□ 2.11
VEGFA-222ENST00000520948 NCOA1Q15788 1441 aa28.25■■■□□ 2.11
VEGFA-222ENST00000520948 CAMSAP1Q5T5Y3 1602 aa28.23■■■□□ 2.11
VEGFA-222ENST00000520948 MYO3AQ8NEV4 1616 aa28.21■■■□□ 2.11
VEGFA-222ENST00000520948 GGT6Q6P531 493 aa28.2■■■□□ 2.1
VEGFA-222ENST00000520948 MBD5Q9P267 1494 aa28.18■■■□□ 2.1
VEGFA-222ENST00000520948 LTBP4Q8N2S1 1624 aa28.18■■■□□ 2.1
VEGFA-222ENST00000520948 ZNF142P52746 1687 aaPredicted RBP28.16■■■□□ 2.1
VEGFA-222ENST00000520948 MYOM3Q5VTT5 1437 aa28.15■■■□□ 2.1
VEGFA-222ENST00000520948 PTPRKQ15262 1439 aa28.14■■■□□ 2.1
VEGFA-222ENST00000520948 CEP170BQ9Y4F5 1589 aaPredicted RBP28.13■■■□□ 2.09
VEGFA-222ENST00000520948 NCKAP5LQ9HCH0 1330 aa28.12■■■□□ 2.09
VEGFA-222ENST00000520948 MIA2Q96PC5 1412 aa28.1■■■□□ 2.09
VEGFA-222ENST00000520948 RTEL1-TNFRSF6BF6WH68 1400 aa28.09■■■□□ 2.09
VEGFA-222ENST00000520948 CAMSAP2Q08AD1 1489 aa28.08■■■□□ 2.09
VEGFA-222ENST00000520948 PPARGC1BQ86YN6 1023 aaKnown RBP28.08■■■□□ 2.09
VEGFA-222ENST00000520948 CCDC141Q6ZP82 1450 aa28.07■■■□□ 2.08
VEGFA-222ENST00000520948 DHX29Q7Z478 1369 aaKnown RBP28.05■■■□□ 2.08
VEGFA-222ENST00000520948 PLA2R1Q13018 1463 aa28.04■■■□□ 2.08
VEGFA-222ENST00000520948 PPP6R1Q9UPN7 881 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms