RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 CCDC7Q96M83 1385 aa8.75□□□□□ -1.01
CPNE3-203ENST00000517490 CASKIN1Q8WXD9 1431 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 RCAN3Q9UKA8 241 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 TSPY4P0CV99 314 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 TSPY10P0CW01 314 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 BECN1Q14457 450 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 RALBP1Q15311 655 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 ROCK2O75116 1388 aaKnown RBP8.74□□□□□ -1.01
CPNE3-203ENST00000517490 MAPKBP1O60336 1514 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 CUX1P39880 1505 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 FYCO1Q9BQS8 1478 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 CADPSQ9ULU8 1353 aa8.74□□□□□ -1.01
CPNE3-203ENST00000517490 FOXD1Q16676 465 aa8.73□□□□□ -1.01
CPNE3-203ENST00000517490 PDE3BQ13370 1112 aa8.72□□□□□ -1.01
CPNE3-203ENST00000517490 CFDP1Q9UEE9 299 aaPredicted RBP8.72□□□□□ -1.01
CPNE3-203ENST00000517490 MYOM3Q5VTT5 1437 aa8.72□□□□□ -1.01
CPNE3-203ENST00000517490 HFM1A2PYH4 1435 aa8.72□□□□□ -1.01
CPNE3-203ENST00000517490 MS4A1P11836 297 aa8.7□□□□□ -1.02
CPNE3-203ENST00000517490 PDE4AP27815 886 aa8.7□□□□□ -1.02
CPNE3-203ENST00000517490 FGD5Q6ZNL6 1462 aa8.7□□□□□ -1.02
CPNE3-203ENST00000517490 KTN1Q86UP2 1357 aaKnown RBP8.7□□□□□ -1.02
CPNE3-203ENST00000517490 BIVM-ERCC5R4GMW8 1640 aa8.7□□□□□ -1.02
CPNE3-203ENST00000517490 EFCAB5A4FU69 1503 aa8.69□□□□□ -1.02
CPNE3-203ENST00000517490 KIF15Q9NS87 1388 aa8.69□□□□□ -1.02
CPNE3-203ENST00000517490 CFTRP13569 1480 aa8.69□□□□□ -1.02
CPNE3-203ENST00000517490 KIF7Q2M1P5 1343 aa8.69□□□□□ -1.02
CPNE3-203ENST00000517490 RRP1P56182 461 aaKnown RBP8.69□□□□□ -1.02
CPNE3-203ENST00000517490 ARID4BQ4LE39 1312 aaPredicted RBP8.68□□□□□ -1.02
CPNE3-203ENST00000517490 SMG6Q86US8 1419 aaKnown RBP8.68□□□□□ -1.02
CPNE3-203ENST00000517490 MYBBP1AQ9BQG0 1328 aaKnown RBP8.68□□□□□ -1.02
CPNE3-203ENST00000517490 PKD2Q13563 968 aa8.67□□□□□ -1.02
CPNE3-203ENST00000517490 NCOA2Q15596 1464 aa8.67□□□□□ -1.02
CPNE3-203ENST00000517490 NLRP13Q86W25 1043 aa8.67□□□□□ -1.02
CPNE3-203ENST00000517490 PAK3O75914 559 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-203ENST00000517490 FBLN2P98095 1184 aa8.67□□□□□ -1.02
CPNE3-203ENST00000517490 ERCC6Q03468 1493 aa8.67□□□□□ -1.02
CPNE3-203ENST00000517490 PRDM2Q13029 1718 aa8.66□□□□□ -1.02
CPNE3-203ENST00000517490 ANP32BQ92688 251 aaKnown RBP8.66□□□□□ -1.02
CPNE3-203ENST00000517490 KNSTRNQ9Y448 316 aa8.66□□□□□ -1.02
CPNE3-203ENST00000517490 CDCA8Q53HL2 280 aa8.66□□□□□ -1.02
CPNE3-203ENST00000517490 EXOC6Q8TAG9 804 aa8.66□□□□□ -1.02
CPNE3-203ENST00000517490 USP47Q96K76 1375 aa8.66□□□□□ -1.02
CPNE3-203ENST00000517490 RGS3P49796 1198 aa8.65□□□□□ -1.02
CPNE3-203ENST00000517490 DCAF11Q8TEB1 546 aa8.65□□□□□ -1.02
CPNE3-203ENST00000517490 AQRO60306 1485 aaKnown RBP eCLIP8.65□□□□□ -1.036e-8■■■■■ 35.8
CPNE3-203ENST00000517490 PLEKHD1A6NEE1 506 aa8.64□□□□□ -1.03
CPNE3-203ENST00000517490 GSE1Q14687 1217 aa8.64□□□□□ -1.03
CPNE3-203ENST00000517490 CC2D1BQ5T0F9 858 aaKnown RBP8.64□□□□□ -1.03
CPNE3-203ENST00000517490 L1TD1Q5T7N2 865 aaKnown RBP8.64□□□□□ -1.03
CPNE3-203ENST00000517490 NAIPQ13075 1403 aa8.64□□□□□ -1.03
CPNE3-203ENST00000517490 CCDC184Q52MB2 194 aa8.64□□□□□ -1.03
CPNE3-203ENST00000517490 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.64□□□□□ -1.03
CPNE3-203ENST00000517490 PCF11O94913 1555 aaKnown RBP8.63□□□□□ -1.03
CPNE3-203ENST00000517490 TMF1P82094 1093 aa8.63□□□□□ -1.03
CPNE3-203ENST00000517490 RGL3Q3MIN7 710 aa8.63□□□□□ -1.03
CPNE3-203ENST00000517490 ANKRD30AQ9BXX3 1397 aa8.63□□□□□ -1.03
CPNE3-203ENST00000517490 TDRD9Q8NDG6 1382 aaKnown RBP8.63□□□□□ -1.03
CPNE3-203ENST00000517490 AKNAQ7Z591 1439 aa8.63□□□□□ -1.03
CPNE3-203ENST00000517490 FANCD2Q9BXW9 1451 aa8.62□□□□□ -1.03
CPNE3-203ENST00000517490 HSP90AA1P07900 732 aaKnown RBP8.62□□□□□ -1.03
CPNE3-203ENST00000517490 EHBP1L1Q8N3D4 1523 aa8.62□□□□□ -1.03
CPNE3-203ENST00000517490 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.62□□□□□ -1.03
CPNE3-203ENST00000517490 MRC2Q9UBG0 1479 aa8.61□□□□□ -1.03
CPNE3-203ENST00000517490 CENPQQ7L2Z9 268 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-203ENST00000517490 BRD4O60885 1362 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-203ENST00000517490 NUP155O75694 1391 aa8.6□□□□□ -1.03
CPNE3-203ENST00000517490 FAM161AQ3B820 660 aa8.6□□□□□ -1.03
CPNE3-203ENST00000517490 NCOA1Q15788 1441 aa8.6□□□□□ -1.03
CPNE3-203ENST00000517490 ST20-MTHFSA0A0A6YYL1 179 aa8.59□□□□□ -1.03
CPNE3-203ENST00000517490 TRIM44Q96DX7 344 aaPredicted RBP8.59□□□□□ -1.03
CPNE3-203ENST00000517490 CFAP44Q96MT7 982 aa8.59□□□□□ -1.03
CPNE3-203ENST00000517490 RSPH6AQ9H0K4 717 aa8.59□□□□□ -1.03
CPNE3-203ENST00000517490 NBPF8Q3BBV2 869 aa8.59□□□□□ -1.03
CPNE3-203ENST00000517490 PTPN23Q9H3S7 1636 aa8.59□□□□□ -1.03
CPNE3-203ENST00000517490 RAD54L2Q9Y4B4 1467 aa8.58□□□□□ -1.04
CPNE3-203ENST00000517490 ARID3AQ99856 593 aa8.58□□□□□ -1.04
CPNE3-203ENST00000517490 MIA2Q96PC5 1412 aa8.58□□□□□ -1.04
CPNE3-203ENST00000517490 PNISRQ8TF01 805 aaKnown RBP8.58□□□□□ -1.04
CPNE3-203ENST00000517490 CHMP7Q8WUX9 453 aaPredicted RBP8.58□□□□□ -1.04
CPNE3-203ENST00000517490 CRBNQ96SW2 442 aa8.58□□□□□ -1.04
CPNE3-203ENST00000517490 NAP1L5Q96NT1 182 aaPredicted RBP8.58□□□□□ -1.04
CPNE3-203ENST00000517490 BACH2Q9BYV9 841 aa8.58□□□□□ -1.04
CPNE3-203ENST00000517490 SUPT6HQ7KZ85 1726 aaKnown RBP8.58□□□□□ -1.04
CPNE3-203ENST00000517490 PLCB2Q00722 1185 aa8.57□□□□□ -1.04
CPNE3-203ENST00000517490 GOLGA2Q08379 1002 aa8.57□□□□□ -1.04
CPNE3-203ENST00000517490 NFKBIBQ15653 356 aa8.56□□□□□ -1.04
CPNE3-203ENST00000517490 C11orf95C9JLR9 678 aaPredicted RBP8.56□□□□□ -1.04
CPNE3-203ENST00000517490 PLIN1O60240 522 aa8.56□□□□□ -1.04
CPNE3-203ENST00000517490 IL27Q8NEV9 243 aa8.56□□□□□ -1.04
CPNE3-203ENST00000517490 ANO8Q9HCE9 1232 aaPredicted RBP8.56□□□□□ -1.04
CPNE3-203ENST00000517490 GAPVD1Q14C86 1478 aa8.54□□□□□ -1.04
CPNE3-203ENST00000517490 IFT140Q96RY7 1462 aa8.54□□□□□ -1.04
CPNE3-203ENST00000517490 CFAP43Q8NDM7 1665 aa8.54□□□□□ -1.04
CPNE3-203ENST00000517490 GOLGA6L22H0YM25 854 aa8.54□□□□□ -1.04
CPNE3-203ENST00000517490 SLC4A3P48751 1232 aa8.54□□□□□ -1.04
CPNE3-203ENST00000517490 FRAT1Q92837 279 aaPredicted RBP8.54□□□□□ -1.04
CPNE3-203ENST00000517490 CFAP53Q96M91 514 aa8.53□□□□□ -1.04
CPNE3-203ENST00000517490 ROCK1Q13464 1354 aa8.53□□□□□ -1.04
CPNE3-203ENST00000517490 ANKRD30BQ9BXX2 1392 aa8.53□□□□□ -1.04
CPNE3-203ENST00000517490 FTSJ3Q8IY81 847 aaKnown RBP8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms