RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ARHGEF40Q8TER5 1519 aa21.93■■□□□ 1.1
TCOF1-215ENST00000515516 MYO5CQ9NQX4 1742 aa21.92■■□□□ 1.1
TCOF1-215ENST00000515516 ZMYM4Q5VZL5 1548 aa21.92■■□□□ 1.1
TCOF1-215ENST00000515516 ZFYVE16Q7Z3T8 1539 aa21.92■■□□□ 1.1
TCOF1-215ENST00000515516 YEATS2Q9ULM3 1422 aa21.9■■□□□ 1.1
TCOF1-215ENST00000515516 AFAP1Q8N556 730 aa21.88■■□□□ 1.09
TCOF1-215ENST00000515516 LRRIQ1Q96JM4 1722 aa21.88■■□□□ 1.09
TCOF1-215ENST00000515516 PTPRMP28827 1452 aa21.88■■□□□ 1.09
TCOF1-215ENST00000515516 ZNF518AQ6AHZ1 1483 aa21.87■■□□□ 1.09
TCOF1-215ENST00000515516 MLECQ14165 292 aa21.86■■□□□ 1.09
TCOF1-215ENST00000515516 CEP162Q5TB80 1403 aa21.86■■□□□ 1.09
TCOF1-215ENST00000515516 ADAMTSL3P82987 1691 aa21.85■■□□□ 1.09
TCOF1-215ENST00000515516 ATP10AO60312 1499 aa21.84■■□□□ 1.09
TCOF1-215ENST00000515516 ZNF777Q9ULD5 760 aaPredicted RBP21.84■■□□□ 1.09
TCOF1-215ENST00000515516 MTUS2Q5JR59 1369 aa21.84■■□□□ 1.09
TCOF1-215ENST00000515516 BCORL1Q5H9F3 1711 aa21.83■■□□□ 1.09
TCOF1-215ENST00000515516 HECW2Q9P2P5 1572 aa21.83■■□□□ 1.09
TCOF1-215ENST00000515516 C9orf84Q5VXU9 1444 aa21.81■■□□□ 1.08
TCOF1-215ENST00000515516 PLPPR3Q6T4P5 718 aa21.8■■□□□ 1.08
TCOF1-215ENST00000515516 LOC105371045A0A1W2PR82 267 aa21.79■■□□□ 1.08
TCOF1-215ENST00000515516 CFDP1Q9UEE9 299 aaPredicted RBP21.79■■□□□ 1.08
TCOF1-215ENST00000515516 CCNB3Q8WWL7 1395 aa21.78■■□□□ 1.08
TCOF1-215ENST00000515516 MADDQ8WXG6 1647 aa21.78■■□□□ 1.08
TCOF1-215ENST00000515516 PREX2Q70Z35 1606 aa21.77■■□□□ 1.08
TCOF1-215ENST00000515516 TRAPPC8Q9Y2L5 1435 aa21.76■■□□□ 1.07
TCOF1-215ENST00000515516 GPATCH8Q9UKJ3 1502 aaKnown RBP21.75■■□□□ 1.07
TCOF1-215ENST00000515516 CDC42BPBQ9Y5S2 1711 aa21.75■■□□□ 1.07
TCOF1-215ENST00000515516 KDM5CP41229 1560 aa21.74■■□□□ 1.07
TCOF1-215ENST00000515516 MLH3Q9UHC1 1453 aa21.74■■□□□ 1.07
TCOF1-215ENST00000515516 ABCC1P33527 1531 aa21.74■■□□□ 1.07
TCOF1-215ENST00000515516 ARHGEF12Q9NZN5 1544 aa21.73■■□□□ 1.07
TCOF1-215ENST00000515516 HNRNPMP52272 730 aaKnown RBP eCLIP21.72■■□□□ 1.07
TCOF1-215ENST00000515516 RIMS1Q86UR5 1692 aaKnown RBP21.7■■□□□ 1.06
TCOF1-215ENST00000515516 SPAG9O60271 1321 aaKnown RBP21.7■■□□□ 1.06
TCOF1-215ENST00000515516 ESF1Q9H501 851 aaKnown RBP21.69■■□□□ 1.06
TCOF1-215ENST00000515516 PLEKHH2Q8IVE3 1493 aa21.69■■□□□ 1.06
TCOF1-215ENST00000515516 CDC42BPAQ5VT25 1732 aa21.68■■□□□ 1.06
TCOF1-215ENST00000515516 EHBP1L1Q8N3D4 1523 aa21.67■■□□□ 1.06
TCOF1-215ENST00000515516 KIAA1107Q9UPP5 1409 aa21.67■■□□□ 1.06
TCOF1-215ENST00000515516 SIGLEC1Q9BZZ2 1709 aa21.66■■□□□ 1.06
TCOF1-215ENST00000515516 ITSN2Q9NZM3 1697 aa21.66■■□□□ 1.06
TCOF1-215ENST00000515516 DIP2CQ9Y2E4 1556 aa21.65■■□□□ 1.06
TCOF1-215ENST00000515516 SAMD9LQ8IVG5 1584 aa21.65■■□□□ 1.06
TCOF1-215ENST00000515516 SYCP2Q9BX26 1530 aa21.64■■□□□ 1.05
TCOF1-215ENST00000515516 VPS8Q8N3P4 1428 aa21.63■■□□□ 1.05
TCOF1-215ENST00000515516 REREQ9P2R6 1566 aa21.62■■□□□ 1.05
TCOF1-215ENST00000515516 CEBPAP49715 358 aaPredicted RBP21.61■■□□□ 1.05
TCOF1-215ENST00000515516 ZNF644Q9H582 1327 aaPredicted RBP21.6■■□□□ 1.05
TCOF1-215ENST00000515516 LMTK3Q96Q04 1460 aa21.6■■□□□ 1.05
TCOF1-215ENST00000515516 ABCA6Q8N139 1617 aa21.6■■□□□ 1.05
TCOF1-215ENST00000515516 FER1L4A9Z1Z3 1794 aa21.59■■□□□ 1.05
TCOF1-215ENST00000515516 AGLP35573 1532 aa21.59■■□□□ 1.05
TCOF1-215ENST00000515516 HSPA2P54652 639 aa21.58■■□□□ 1.05
TCOF1-215ENST00000515516 TIAM1Q13009 1591 aa21.57■■□□□ 1.04
TCOF1-215ENST00000515516 NCOA2Q15596 1464 aa21.56■■□□□ 1.04
TCOF1-215ENST00000515516 KIDINS220Q9ULH0 1771 aa21.55■■□□□ 1.04
TCOF1-215ENST00000515516 RSPH4AQ5TD94 716 aa21.54■■□□□ 1.04
TCOF1-215ENST00000515516 APLP2Q06481 763 aa21.53■■□□□ 1.04
TCOF1-215ENST00000515516 ILDR1Q86SU0 546 aaPredicted RBP21.53■■□□□ 1.04
TCOF1-215ENST00000515516 ATP7AQ04656 1500 aa21.53■■□□□ 1.04
TCOF1-215ENST00000515516 CNTLNQ9NXG0 1405 aa21.52■■□□□ 1.04
TCOF1-215ENST00000515516 SUPT6HQ7KZ85 1726 aaKnown RBP21.51■■□□□ 1.03
TCOF1-215ENST00000515516 A2MP01023 1474 aa21.51■■□□□ 1.03
TCOF1-215ENST00000515516 LRRC9Q6ZRR7 1453 aa21.51■■□□□ 1.03
TCOF1-215ENST00000515516 MBD5Q9P267 1494 aa21.51■■□□□ 1.03
TCOF1-215ENST00000515516 GGT6Q6P531 493 aa21.49■■□□□ 1.03
TCOF1-215ENST00000515516 RTEL1-TNFRSF6BF6WH68 1400 aa21.47■■□□□ 1.03
TCOF1-215ENST00000515516 UHRF1BP1Q6BDS2 1440 aa21.47■■□□□ 1.03
TCOF1-215ENST00000515516 TSPY4P0CV99 314 aa21.47■■□□□ 1.03
TCOF1-215ENST00000515516 TSPY10P0CW01 314 aa21.47■■□□□ 1.03
TCOF1-215ENST00000515516 KANK4Q5T7N3 995 aaPredicted RBP21.47■■□□□ 1.03
TCOF1-215ENST00000515516 INO80Q9ULG1 1556 aaPredicted RBP21.46■■□□□ 1.03
TCOF1-215ENST00000515516 CAMSAP2Q08AD1 1489 aa21.45■■□□□ 1.03
TCOF1-215ENST00000515516 MAP3K1Q13233 1512 aa21.45■■□□□ 1.02
TCOF1-215ENST00000515516 CCDC141Q6ZP82 1450 aa21.45■■□□□ 1.02
TCOF1-215ENST00000515516 PPP6R1Q9UPN7 881 aa21.44■■□□□ 1.02
TCOF1-215ENST00000515516 ZMYM3Q14202 1370 aa21.43■■□□□ 1.02
TCOF1-215ENST00000515516 DHX29Q7Z478 1369 aaKnown RBP21.42■■□□□ 1.02
TCOF1-215ENST00000515516 DMRT2Q9Y5R5 561 aa21.41■■□□□ 1.02
TCOF1-215ENST00000515516 PREX1Q8TCU6 1659 aa21.4■■□□□ 1.02
TCOF1-215ENST00000515516 PLXNC1O60486 1568 aa21.4■■□□□ 1.02
TCOF1-215ENST00000515516 KIF3BO15066 747 aa21.39■■□□□ 1.01
TCOF1-215ENST00000515516 C3P01024 1663 aa21.37■■□□□ 1.01
TCOF1-215ENST00000515516 ADGBQ8N7X0 1667 aa21.37■■□□□ 1.01
TCOF1-215ENST00000515516 MIA2Q96PC5 1412 aa21.37■■□□□ 1.01
TCOF1-215ENST00000515516 FBXO41Q8TF61 875 aa21.36■■□□□ 1.01
TCOF1-215ENST00000515516 NPATQ14207 1427 aa21.36■■□□□ 1.01
TCOF1-215ENST00000515516 MYOM3Q5VTT5 1437 aa21.36■■□□□ 1.01
TCOF1-215ENST00000515516 ARHGEF5Q12774 1597 aa21.34■■□□□ 1.01
TCOF1-215ENST00000515516 SETD1BQ9UPS6 1966 aaKnown RBP21.32■■□□□ 1
TCOF1-215ENST00000515516 MROH2AA6NES4 1674 aa21.31■■□□□ 1
TCOF1-215ENST00000515516 WASHC2CQ9Y4E1 1318 aa21.3■■□□□ 1
TCOF1-215ENST00000515516 CLTCQ00610 1675 aaKnown RBP21.28■■□□□ 1
TCOF1-215ENST00000515516 PTPRKQ15262 1439 aa21.27■■□□□ 1
TCOF1-215ENST00000515516 CERKQ8TCT0 537 aa21.26■□□□□ 0.99
TCOF1-215ENST00000515516 PTPRTO14522 1441 aa21.22■□□□□ 0.99
TCOF1-215ENST00000515516 NCOA1Q15788 1441 aa21.21■□□□□ 0.99
TCOF1-215ENST00000515516 KDM5DQ9BY66 1539 aa21.21■□□□□ 0.99
TCOF1-215ENST00000515516 MAST1Q9Y2H9 1570 aa21.21■□□□□ 0.99
TCOF1-215ENST00000515516 FAM135AQ9P2D6 1515 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms