RNA–Protein interactions for RNA: ENST00000509995.5

SNF8-207, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-207ENST00000509995 RAPGEF6Q8TEU7 1601 aa19.03■□□□□ 0.64
SNF8-207ENST00000509995 CEBPAP49715 358 aaPredicted RBP19.03■□□□□ 0.64
SNF8-207ENST00000509995 MED1Q15648 1581 aaPredicted RBP19.02■□□□□ 0.63
SNF8-207ENST00000509995 FAM9AQ8IZU1 332 aaPredicted RBP19.01■□□□□ 0.63
SNF8-207ENST00000509995 C9orf84Q5VXU9 1444 aa18.99■□□□□ 0.63
SNF8-207ENST00000509995 ATP10AO60312 1499 aa18.97■□□□□ 0.63
SNF8-207ENST00000509995 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.96■□□□□ 0.63
SNF8-207ENST00000509995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
SNF8-207ENST00000509995 HNRNPUL2Q1KMD3 747 aaKnown RBP18.96■□□□□ 0.63
SNF8-207ENST00000509995 NCOA1Q15788 1441 aa18.95■□□□□ 0.62
SNF8-207ENST00000509995 NUP153P49790 1475 aaKnown RBP18.95■□□□□ 0.62
SNF8-207ENST00000509995 C3P01024 1663 aa18.95■□□□□ 0.62
SNF8-207ENST00000509995 UBAP1LF5GYI3 381 aa18.94■□□□□ 0.62
SNF8-207ENST00000509995 P3H3Q8IVL6 736 aa18.93■□□□□ 0.62
SNF8-207ENST00000509995 SAMD9Q5K651 1589 aa18.93■□□□□ 0.62
SNF8-207ENST00000509995 SCAPERQ9BY12 1400 aa18.89■□□□□ 0.61
SNF8-207ENST00000509995 PRXQ9BXM0 1461 aa18.87■□□□□ 0.61
SNF8-207ENST00000509995 ZNF335Q9H4Z2 1342 aaPredicted RBP18.85■□□□□ 0.61
SNF8-207ENST00000509995 CAMSAP1Q5T5Y3 1602 aa18.85■□□□□ 0.61
SNF8-207ENST00000509995 PLEKHD1A6NEE1 506 aa18.84■□□□□ 0.61
SNF8-207ENST00000509995 TRAPPC8Q9Y2L5 1435 aa18.83■□□□□ 0.61
SNF8-207ENST00000509995 HSPA1LP34931 641 aa18.81■□□□□ 0.6
SNF8-207ENST00000509995 REREQ9P2R6 1566 aa18.81■□□□□ 0.6
SNF8-207ENST00000509995 DIP2CQ9Y2E4 1556 aa18.8■□□□□ 0.6
SNF8-207ENST00000509995 PLCH2O75038 1416 aa18.79■□□□□ 0.6
SNF8-207ENST00000509995 KDM5CP41229 1560 aa18.79■□□□□ 0.6
SNF8-207ENST00000509995 PHF23Q9BUL5 403 aaPredicted RBP18.78■□□□□ 0.6
SNF8-207ENST00000509995 ZNF518AQ6AHZ1 1483 aa18.77■□□□□ 0.6
SNF8-207ENST00000509995 AGLP35573 1532 aa18.75■□□□□ 0.59
SNF8-207ENST00000509995 MYO5CQ9NQX4 1742 aa18.75■□□□□ 0.59
SNF8-207ENST00000509995 ABCA6Q8N139 1617 aa18.74■□□□□ 0.59
SNF8-207ENST00000509995 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
SNF8-207ENST00000509995 NCKAP5LQ9HCH0 1330 aa18.73■□□□□ 0.59
SNF8-207ENST00000509995 ZNF142P52746 1687 aaPredicted RBP18.72■□□□□ 0.59
SNF8-207ENST00000509995 SUPT6HQ7KZ85 1726 aaKnown RBP18.71■□□□□ 0.59
SNF8-207ENST00000509995 PLA2R1Q13018 1463 aa18.71■□□□□ 0.59
SNF8-207ENST00000509995 ESF1Q9H501 851 aaKnown RBP18.71■□□□□ 0.59
SNF8-207ENST00000509995 NPATQ14207 1427 aa18.71■□□□□ 0.59
SNF8-207ENST00000509995 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
SNF8-207ENST00000509995 MROH2AA6NES4 1674 aa18.7■□□□□ 0.58
SNF8-207ENST00000509995 PIP4K2BP78356 416 aa18.7■□□□□ 0.58
SNF8-207ENST00000509995 TCOF1Q13428 1488 aaKnown RBP18.69■□□□□ 0.58
SNF8-207ENST00000509995 MYO3AQ8NEV4 1616 aa18.67■□□□□ 0.58
SNF8-207ENST00000509995 EFCAB2Q5VUJ9 269 aa18.67■□□□□ 0.58
SNF8-207ENST00000509995 CDK13Q14004 1512 aaKnown RBP18.67■□□□□ 0.58
SNF8-207ENST00000509995 PKD2Q13563 968 aa18.66■□□□□ 0.58
SNF8-207ENST00000509995 AFAP1Q8N556 730 aa18.66■□□□□ 0.58
SNF8-207ENST00000509995 TOM1O60784 492 aa18.65■□□□□ 0.58
SNF8-207ENST00000509995 MLH3Q9UHC1 1453 aa18.65■□□□□ 0.58
SNF8-207ENST00000509995 CEP170BQ9Y4F5 1589 aaPredicted RBP18.64■□□□□ 0.58
SNF8-207ENST00000509995 MYT1LQ9UL68 1186 aa18.63■□□□□ 0.57
SNF8-207ENST00000509995 CPS1P31327 1500 aa18.63■□□□□ 0.57
SNF8-207ENST00000509995 ARHGAP5Q13017 1502 aa18.61■□□□□ 0.57
SNF8-207ENST00000509995 PPP6R1Q9UPN7 881 aa18.61■□□□□ 0.57
SNF8-207ENST00000509995 KIF14Q15058 1648 aa18.6■□□□□ 0.57
SNF8-207ENST00000509995 ALKQ9UM73 1620 aa18.6■□□□□ 0.57
SNF8-207ENST00000509995 KIDINS220Q9ULH0 1771 aa18.57■□□□□ 0.56
SNF8-207ENST00000509995 ZMYM3Q14202 1370 aa18.56■□□□□ 0.56
SNF8-207ENST00000509995 POLR1AO95602 1720 aaPredicted RBP18.56■□□□□ 0.56
SNF8-207ENST00000509995 PTPRKQ15262 1439 aa18.55■□□□□ 0.56
SNF8-207ENST00000509995 CLTCQ00610 1675 aaKnown RBP18.54■□□□□ 0.56
SNF8-207ENST00000509995 SHANK2Q9UPX8 1470 aa18.54■□□□□ 0.56
SNF8-207ENST00000509995 RANGAP1P46060 587 aaPredicted RBP18.53■□□□□ 0.56
SNF8-207ENST00000509995 RGS17Q9UGC6 210 aaPredicted RBP18.53■□□□□ 0.56
SNF8-207ENST00000509995 CDC42BPBQ9Y5S2 1711 aa18.53■□□□□ 0.56
SNF8-207ENST00000509995 ITSN2Q9NZM3 1697 aa18.53■□□□□ 0.56
SNF8-207ENST00000509995 ABCC1P33527 1531 aa18.53■□□□□ 0.56
SNF8-207ENST00000509995 NEURL4Q96JN8 1562 aa18.51■□□□□ 0.55
SNF8-207ENST00000509995 DNMT1P26358 1616 aaKnown RBP18.49■□□□□ 0.55
SNF8-207ENST00000509995 VWDEQ8N2E2 1590 aa18.47■□□□□ 0.55
SNF8-207ENST00000509995 A2ML1A8K2U0 1454 aa18.46■□□□□ 0.55
SNF8-207ENST00000509995 PREX2Q70Z35 1606 aa18.46■□□□□ 0.55
SNF8-207ENST00000509995 TROQ12816 1431 aaPredicted RBP18.44■□□□□ 0.54
SNF8-207ENST00000509995 SENP3Q9H4L4 574 aaPredicted RBP18.44■□□□□ 0.54
SNF8-207ENST00000509995 RNF17Q9BXT8 1623 aaKnown RBP18.43■□□□□ 0.54
SNF8-207ENST00000509995 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
SNF8-207ENST00000509995 CDK11AQ9UQ88 783 aaPredicted RBP18.42■□□□□ 0.54
SNF8-207ENST00000509995 CLIP1P30622 1438 aa18.41■□□□□ 0.54
SNF8-207ENST00000509995 PLXNC1O60486 1568 aa18.41■□□□□ 0.54
SNF8-207ENST00000509995 SAMD9LQ8IVG5 1584 aa18.41■□□□□ 0.54
SNF8-207ENST00000509995 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
SNF8-207ENST00000509995 POTEAQ6S8J7 498 aa18.38■□□□□ 0.53
SNF8-207ENST00000509995 SRCAPQ6ZRS2 3230 aa18.38■□□□□ 0.53
SNF8-207ENST00000509995 SYNMO15061 1565 aa18.38■□□□□ 0.53
SNF8-207ENST00000509995 STRCP1A6NGW2 1772 aa18.37■□□□□ 0.53
SNF8-207ENST00000509995 LRRIQ1Q96JM4 1722 aa18.35■□□□□ 0.53
SNF8-207ENST00000509995 LRRC7Q96NW7 1537 aa18.34■□□□□ 0.53
SNF8-207ENST00000509995 ATP1B4Q9UN42 357 aaPredicted RBP18.34■□□□□ 0.53
SNF8-207ENST00000509995 CDC42BPAQ5VT25 1732 aa18.34■□□□□ 0.53
SNF8-207ENST00000509995 DEPDC5O75140 1603 aa18.34■□□□□ 0.53
SNF8-207ENST00000509995 FMN1Q68DA7 1419 aa18.33■□□□□ 0.53
SNF8-207ENST00000509995 ATP7AQ04656 1500 aa18.33■□□□□ 0.52
SNF8-207ENST00000509995 MED14O60244 1454 aa18.33■□□□□ 0.52
SNF8-207ENST00000509995 IQGAP1P46940 1657 aa18.32■□□□□ 0.52
SNF8-207ENST00000509995 INO80Q9ULG1 1556 aaPredicted RBP18.31■□□□□ 0.52
SNF8-207ENST00000509995 A2MP01023 1474 aa18.31■□□□□ 0.52
SNF8-207ENST00000509995 NPHP4O75161 1426 aaPredicted RBP18.31■□□□□ 0.52
SNF8-207ENST00000509995 SYCP2Q9BX26 1530 aa18.3■□□□□ 0.52
SNF8-207ENST00000509995 SPAG9O60271 1321 aaKnown RBP18.28■□□□□ 0.52
SNF8-207ENST00000509995 GGT6Q6P531 493 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms