RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 ADAMTSL3P82987 1691 aa23.34■■□□□ 1.33
HMGCS1-203ENST00000507004 ZFYVE16Q7Z3T8 1539 aa23.33■■□□□ 1.32
HMGCS1-203ENST00000507004 PCF11O94913 1555 aaKnown RBP23.32■■□□□ 1.32
HMGCS1-203ENST00000507004 BCORL1Q5H9F3 1711 aa23.31■■□□□ 1.32
HMGCS1-203ENST00000507004 ARHGAP5Q13017 1502 aa23.29■■□□□ 1.32
HMGCS1-203ENST00000507004 PTPRMP28827 1452 aa23.29■■□□□ 1.32
HMGCS1-203ENST00000507004 HECW2Q9P2P5 1572 aa23.28■■□□□ 1.32
HMGCS1-203ENST00000507004 ZNF518AQ6AHZ1 1483 aa23.28■■□□□ 1.32
HMGCS1-203ENST00000507004 LRRIQ1Q96JM4 1722 aa23.28■■□□□ 1.32
HMGCS1-203ENST00000507004 YEATS2Q9ULM3 1422 aa23.24■■□□□ 1.31
HMGCS1-203ENST00000507004 ATP10AO60312 1499 aa23.23■■□□□ 1.31
HMGCS1-203ENST00000507004 C9orf84Q5VXU9 1444 aa23.21■■□□□ 1.31
HMGCS1-203ENST00000507004 MADDQ8WXG6 1647 aa23.21■■□□□ 1.31
HMGCS1-203ENST00000507004 PREX2Q70Z35 1606 aa23.2■■□□□ 1.3
HMGCS1-203ENST00000507004 KDM5CP41229 1560 aa23.19■■□□□ 1.3
HMGCS1-203ENST00000507004 CDC42BPBQ9Y5S2 1711 aa23.17■■□□□ 1.3
HMGCS1-203ENST00000507004 AFAP1Q8N556 730 aa23.15■■□□□ 1.3
HMGCS1-203ENST00000507004 MYT1LQ9UL68 1186 aa23.15■■□□□ 1.3
HMGCS1-203ENST00000507004 MLH3Q9UHC1 1453 aa23.15■■□□□ 1.3
HMGCS1-203ENST00000507004 ABCC1P33527 1531 aa23.13■■□□□ 1.29
HMGCS1-203ENST00000507004 RIMS1Q86UR5 1692 aaKnown RBP23.13■■□□□ 1.29
HMGCS1-203ENST00000507004 MTUS2Q5JR59 1369 aa23.12■■□□□ 1.29
HMGCS1-203ENST00000507004 REREQ9P2R6 1566 aa23.11■■□□□ 1.29
HMGCS1-203ENST00000507004 CEP162Q5TB80 1403 aa23.11■■□□□ 1.29
HMGCS1-203ENST00000507004 CDC42BPAQ5VT25 1732 aa23.1■■□□□ 1.29
HMGCS1-203ENST00000507004 PLEKHH2Q8IVE3 1493 aa23.1■■□□□ 1.29
HMGCS1-203ENST00000507004 GPATCH8Q9UKJ3 1502 aaKnown RBP23.08■■□□□ 1.29
HMGCS1-203ENST00000507004 MLECQ14165 292 aa23.08■■□□□ 1.29
HMGCS1-203ENST00000507004 ARHGEF12Q9NZN5 1544 aa23.08■■□□□ 1.28
HMGCS1-203ENST00000507004 ITSN2Q9NZM3 1697 aa23.07■■□□□ 1.28
HMGCS1-203ENST00000507004 CCNB3Q8WWL7 1395 aa23.07■■□□□ 1.28
HMGCS1-203ENST00000507004 TRAPPC8Q9Y2L5 1435 aa23.07■■□□□ 1.28
HMGCS1-203ENST00000507004 CFDP1Q9UEE9 299 aaPredicted RBP23.06■■□□□ 1.28
HMGCS1-203ENST00000507004 FER1L4A9Z1Z3 1794 aa23.06■■□□□ 1.28
HMGCS1-203ENST00000507004 KIAA1107Q9UPP5 1409 aa23.06■■□□□ 1.28
HMGCS1-203ENST00000507004 DIP2CQ9Y2E4 1556 aa23.05■■□□□ 1.28
HMGCS1-203ENST00000507004 SIGLEC1Q9BZZ2 1709 aa23.05■■□□□ 1.28
HMGCS1-203ENST00000507004 AGLP35573 1532 aa23.04■■□□□ 1.28
HMGCS1-203ENST00000507004 ZNF777Q9ULD5 760 aaPredicted RBP23.04■■□□□ 1.28
HMGCS1-203ENST00000507004 EHBP1L1Q8N3D4 1523 aa23.03■■□□□ 1.28
HMGCS1-203ENST00000507004 LMTK3Q96Q04 1460 aa23.02■■□□□ 1.28
HMGCS1-203ENST00000507004 SAMD9LQ8IVG5 1584 aa23■■□□□ 1.27
HMGCS1-203ENST00000507004 ABCA6Q8N139 1617 aa22.99■■□□□ 1.27
HMGCS1-203ENST00000507004 SPAG9O60271 1321 aaKnown RBP22.99■■□□□ 1.27
HMGCS1-203ENST00000507004 ESF1Q9H501 851 aaKnown RBP22.98■■□□□ 1.27
HMGCS1-203ENST00000507004 SYCP2Q9BX26 1530 aa22.98■■□□□ 1.27
HMGCS1-203ENST00000507004 KIDINS220Q9ULH0 1771 aa22.96■■□□□ 1.27
HMGCS1-203ENST00000507004 CNTLNQ9NXG0 1405 aa22.94■■□□□ 1.26
HMGCS1-203ENST00000507004 HNRNPMP52272 730 aaKnown RBP eCLIP22.94■■□□□ 1.266e-8■■■■■ 30.3
HMGCS1-203ENST00000507004 PLPPR3Q6T4P5 718 aa22.94■■□□□ 1.26
HMGCS1-203ENST00000507004 SETD1BQ9UPS6 1966 aaKnown RBP22.92■■□□□ 1.26
HMGCS1-203ENST00000507004 TIAM1Q13009 1591 aa22.91■■□□□ 1.26
HMGCS1-203ENST00000507004 VPS8Q8N3P4 1428 aa22.91■■□□□ 1.26
HMGCS1-203ENST00000507004 RSPH4AQ5TD94 716 aa22.9■■□□□ 1.26
HMGCS1-203ENST00000507004 ILDR1Q86SU0 546 aaPredicted RBP22.9■■□□□ 1.26
HMGCS1-203ENST00000507004 ATP7AQ04656 1500 aa22.9■■□□□ 1.26
HMGCS1-203ENST00000507004 SUPT6HQ7KZ85 1726 aaKnown RBP22.88■■□□□ 1.25
HMGCS1-203ENST00000507004 PREX1Q8TCU6 1659 aa22.87■■□□□ 1.25
HMGCS1-203ENST00000507004 INO80Q9ULG1 1556 aaPredicted RBP22.86■■□□□ 1.25
HMGCS1-203ENST00000507004 RTEL1-TNFRSF6BF6WH68 1400 aa22.86■■□□□ 1.25
HMGCS1-203ENST00000507004 NCOA2Q15596 1464 aa22.85■■□□□ 1.25
HMGCS1-203ENST00000507004 UHRF1BP1Q6BDS2 1440 aa22.85■■□□□ 1.25
HMGCS1-203ENST00000507004 CEBPAP49715 358 aaPredicted RBP22.85■■□□□ 1.25
HMGCS1-203ENST00000507004 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
HMGCS1-203ENST00000507004 A2MP01023 1474 aa22.85■■□□□ 1.25
HMGCS1-203ENST00000507004 LOC105371045A0A1W2PR82 267 aa22.84■■□□□ 1.25
HMGCS1-203ENST00000507004 HSPA2P54652 639 aa22.84■■□□□ 1.25
HMGCS1-203ENST00000507004 MAP3K1Q13233 1512 aa22.83■■□□□ 1.25
HMGCS1-203ENST00000507004 MBD5Q9P267 1494 aa22.83■■□□□ 1.25
HMGCS1-203ENST00000507004 PLXNC1O60486 1568 aa22.81■■□□□ 1.24
HMGCS1-203ENST00000507004 DMRT2Q9Y5R5 561 aa22.81■■□□□ 1.24
HMGCS1-203ENST00000507004 ADGBQ8N7X0 1667 aa22.8■■□□□ 1.24
HMGCS1-203ENST00000507004 ZNF644Q9H582 1327 aaPredicted RBP22.8■■□□□ 1.24
HMGCS1-203ENST00000507004 C3P01024 1663 aa22.79■■□□□ 1.24
HMGCS1-203ENST00000507004 CCDC141Q6ZP82 1450 aa22.79■■□□□ 1.24
HMGCS1-203ENST00000507004 LRRC9Q6ZRR7 1453 aa22.79■■□□□ 1.24
HMGCS1-203ENST00000507004 MROH2AA6NES4 1674 aa22.78■■□□□ 1.24
HMGCS1-203ENST00000507004 NPATQ14207 1427 aa22.78■■□□□ 1.24
HMGCS1-203ENST00000507004 FBXO41Q8TF61 875 aa22.77■■□□□ 1.24
HMGCS1-203ENST00000507004 CAMSAP2Q08AD1 1489 aa22.75■■□□□ 1.23
HMGCS1-203ENST00000507004 ZMYM3Q14202 1370 aa22.75■■□□□ 1.23
HMGCS1-203ENST00000507004 TSPY4P0CV99 314 aa22.74■■□□□ 1.23
HMGCS1-203ENST00000507004 TSPY10P0CW01 314 aa22.74■■□□□ 1.23
HMGCS1-203ENST00000507004 DHX29Q7Z478 1369 aaKnown RBP22.74■■□□□ 1.23
HMGCS1-203ENST00000507004 APLP2Q06481 763 aa22.72■■□□□ 1.23
HMGCS1-203ENST00000507004 GGT6Q6P531 493 aa22.72■■□□□ 1.23
HMGCS1-203ENST00000507004 ARHGEF5Q12774 1597 aa22.72■■□□□ 1.23
HMGCS1-203ENST00000507004 MIA2Q96PC5 1412 aa22.7■■□□□ 1.22
HMGCS1-203ENST00000507004 FAM135AQ9P2D6 1515 aa22.7■■□□□ 1.22
HMGCS1-203ENST00000507004 PTPRTO14522 1441 aa22.65■■□□□ 1.22
HMGCS1-203ENST00000507004 MYOM3Q5VTT5 1437 aa22.65■■□□□ 1.22
HMGCS1-203ENST00000507004 CLTCQ00610 1675 aaKnown RBP22.65■■□□□ 1.22
HMGCS1-203ENST00000507004 KIF3BO15066 747 aa22.63■■□□□ 1.21
HMGCS1-203ENST00000507004 KANK4Q5T7N3 995 aaPredicted RBP22.63■■□□□ 1.21
HMGCS1-203ENST00000507004 PTPRKQ15262 1439 aa22.61■■□□□ 1.21
HMGCS1-203ENST00000507004 CERKQ8TCT0 537 aa22.61■■□□□ 1.21
HMGCS1-203ENST00000507004 STRCQ7RTU9 1775 aa22.61■■□□□ 1.21
HMGCS1-203ENST00000507004 MAST1Q9Y2H9 1570 aa22.6■■□□□ 1.21
HMGCS1-203ENST00000507004 NCOA1Q15788 1441 aa22.59■■□□□ 1.21
HMGCS1-203ENST00000507004 KDM5DQ9BY66 1539 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms