RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 POGZQ7Z3K3 1410 aa28.93■■■□□ 2.22
SQSTM1-209ENST00000504627 ZMYM4Q5VZL5 1548 aa28.92■■■□□ 2.22
SQSTM1-209ENST00000504627 MAGI2Q86UL8 1455 aa28.91■■■□□ 2.22
SQSTM1-209ENST00000504627 ZFYVE16Q7Z3T8 1539 aa28.9■■■□□ 2.22
SQSTM1-209ENST00000504627 YEATS2Q9ULM3 1422 aa28.88■■■□□ 2.21
SQSTM1-209ENST00000504627 ADAMTSL3P82987 1691 aa28.87■■■□□ 2.21
SQSTM1-209ENST00000504627 BCORL1Q5H9F3 1711 aa28.86■■■□□ 2.21
SQSTM1-209ENST00000504627 PTPRMP28827 1452 aa28.85■■■□□ 2.21
SQSTM1-209ENST00000504627 MYT1LQ9UL68 1186 aa28.84■■■□□ 2.21
SQSTM1-209ENST00000504627 HECW2Q9P2P5 1572 aa28.84■■■□□ 2.21
SQSTM1-209ENST00000504627 ZNF518AQ6AHZ1 1483 aa28.82■■■□□ 2.2
SQSTM1-209ENST00000504627 AFAP1Q8N556 730 aa28.81■■■□□ 2.2
SQSTM1-209ENST00000504627 CEP162Q5TB80 1403 aa28.79■■■□□ 2.2
SQSTM1-209ENST00000504627 CDC42BPBQ9Y5S2 1711 aa28.79■■■□□ 2.2
SQSTM1-209ENST00000504627 MADDQ8WXG6 1647 aa28.79■■■□□ 2.2
SQSTM1-209ENST00000504627 MLECQ14165 292 aa28.78■■■□□ 2.2
SQSTM1-209ENST00000504627 PREX2Q70Z35 1606 aa28.77■■■□□ 2.2
SQSTM1-209ENST00000504627 ATP10AO60312 1499 aa28.76■■■□□ 2.19
SQSTM1-209ENST00000504627 ZNF777Q9ULD5 760 aaPredicted RBP28.74■■■□□ 2.19
SQSTM1-209ENST00000504627 MTUS2Q5JR59 1369 aa28.74■■■□□ 2.19
SQSTM1-209ENST00000504627 C9orf84Q5VXU9 1444 aa28.73■■■□□ 2.19
SQSTM1-209ENST00000504627 KDM5CP41229 1560 aa28.71■■■□□ 2.19
SQSTM1-209ENST00000504627 PLPPR3Q6T4P5 718 aa28.7■■■□□ 2.18
SQSTM1-209ENST00000504627 RIMS1Q86UR5 1692 aaKnown RBP28.7■■■□□ 2.18
SQSTM1-209ENST00000504627 CDC42BPAQ5VT25 1732 aa28.69■■■□□ 2.18
SQSTM1-209ENST00000504627 SIGLEC1Q9BZZ2 1709 aa28.69■■■□□ 2.18
SQSTM1-209ENST00000504627 ABCC1P33527 1531 aa28.69■■■□□ 2.18
SQSTM1-209ENST00000504627 LOC105371045A0A1W2PR82 267 aa28.68■■■□□ 2.18
SQSTM1-209ENST00000504627 TRAPPC8Q9Y2L5 1435 aa28.68■■■□□ 2.18
SQSTM1-209ENST00000504627 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
SQSTM1-209ENST00000504627 ARHGEF12Q9NZN5 1544 aa28.66■■■□□ 2.18
SQSTM1-209ENST00000504627 GPATCH8Q9UKJ3 1502 aaKnown RBP28.66■■■□□ 2.18
SQSTM1-209ENST00000504627 CFDP1Q9UEE9 299 aaPredicted RBP28.65■■■□□ 2.18
SQSTM1-209ENST00000504627 MLH3Q9UHC1 1453 aa28.64■■■□□ 2.17
SQSTM1-209ENST00000504627 ITSN2Q9NZM3 1697 aa28.63■■■□□ 2.17
SQSTM1-209ENST00000504627 DIP2CQ9Y2E4 1556 aa28.59■■■□□ 2.17
SQSTM1-209ENST00000504627 HNRNPMP52272 730 aaKnown RBP eCLIP28.59■■■□□ 2.174e-8■■■■□ 21.3
SQSTM1-209ENST00000504627 FER1L4A9Z1Z3 1794 aa28.58■■■□□ 2.17
SQSTM1-209ENST00000504627 EHBP1L1Q8N3D4 1523 aa28.58■■■□□ 2.17
SQSTM1-209ENST00000504627 SAMD9LQ8IVG5 1584 aa28.58■■■□□ 2.17
SQSTM1-209ENST00000504627 SYCP2Q9BX26 1530 aa28.56■■■□□ 2.16
SQSTM1-209ENST00000504627 ABCA6Q8N139 1617 aa28.55■■■□□ 2.16
SQSTM1-209ENST00000504627 PLEKHH2Q8IVE3 1493 aa28.54■■■□□ 2.16
SQSTM1-209ENST00000504627 SPAG9O60271 1321 aaKnown RBP28.54■■■□□ 2.16
SQSTM1-209ENST00000504627 REREQ9P2R6 1566 aa28.52■■■□□ 2.16
SQSTM1-209ENST00000504627 KIAA1107Q9UPP5 1409 aa28.52■■■□□ 2.16
SQSTM1-209ENST00000504627 LMTK3Q96Q04 1460 aa28.51■■■□□ 2.15
SQSTM1-209ENST00000504627 ESF1Q9H501 851 aaKnown RBP28.5■■■□□ 2.15
SQSTM1-209ENST00000504627 KIDINS220Q9ULH0 1771 aa28.5■■■□□ 2.15
SQSTM1-209ENST00000504627 VPS8Q8N3P4 1428 aa28.48■■■□□ 2.15
SQSTM1-209ENST00000504627 TIAM1Q13009 1591 aa28.48■■■□□ 2.15
SQSTM1-209ENST00000504627 CEBPAP49715 358 aaPredicted RBP28.47■■■□□ 2.15
SQSTM1-209ENST00000504627 AGLP35573 1532 aa28.46■■■□□ 2.15
SQSTM1-209ENST00000504627 ZNF644Q9H582 1327 aaPredicted RBP28.45■■■□□ 2.15
SQSTM1-209ENST00000504627 HSPA2P54652 639 aa28.43■■■□□ 2.14
SQSTM1-209ENST00000504627 ATP7AQ04656 1500 aa28.41■■■□□ 2.14
SQSTM1-209ENST00000504627 SUPT6HQ7KZ85 1726 aaKnown RBP28.4■■■□□ 2.14
SQSTM1-209ENST00000504627 NCOA2Q15596 1464 aa28.4■■■□□ 2.14
SQSTM1-209ENST00000504627 ILDR1Q86SU0 546 aaPredicted RBP28.37■■■□□ 2.13
SQSTM1-209ENST00000504627 INO80Q9ULG1 1556 aaPredicted RBP28.35■■■□□ 2.13
SQSTM1-209ENST00000504627 A2MP01023 1474 aa28.34■■■□□ 2.13
SQSTM1-209ENST00000504627 LRRC9Q6ZRR7 1453 aa28.34■■■□□ 2.13
SQSTM1-209ENST00000504627 MBD5Q9P267 1494 aa28.34■■■□□ 2.13
SQSTM1-209ENST00000504627 CNTLNQ9NXG0 1405 aa28.32■■■□□ 2.12
SQSTM1-209ENST00000504627 PREX1Q8TCU6 1659 aa28.29■■■□□ 2.12
SQSTM1-209ENST00000504627 CAMSAP2Q08AD1 1489 aa28.29■■■□□ 2.12
SQSTM1-209ENST00000504627 RSPH4AQ5TD94 716 aa28.29■■■□□ 2.12
SQSTM1-209ENST00000504627 UHRF1BP1Q6BDS2 1440 aa28.28■■■□□ 2.12
SQSTM1-209ENST00000504627 KANK4Q5T7N3 995 aaPredicted RBP28.28■■■□□ 2.12
SQSTM1-209ENST00000504627 GGT6Q6P531 493 aa28.28■■■□□ 2.12
SQSTM1-209ENST00000504627 RTEL1-TNFRSF6BF6WH68 1400 aa28.27■■■□□ 2.12
SQSTM1-209ENST00000504627 APLP2Q06481 763 aa28.27■■■□□ 2.12
SQSTM1-209ENST00000504627 C3P01024 1663 aa28.26■■■□□ 2.12
SQSTM1-209ENST00000504627 MAP3K1Q13233 1512 aa28.26■■■□□ 2.11
SQSTM1-209ENST00000504627 CCDC141Q6ZP82 1450 aa28.26■■■□□ 2.11
SQSTM1-209ENST00000504627 PLXNC1O60486 1568 aa28.25■■■□□ 2.11
SQSTM1-209ENST00000504627 SETD1BQ9UPS6 1966 aaKnown RBP28.25■■■□□ 2.11
SQSTM1-209ENST00000504627 ADGBQ8N7X0 1667 aa28.23■■■□□ 2.11
SQSTM1-209ENST00000504627 TSPY4P0CV99 314 aa28.22■■■□□ 2.11
SQSTM1-209ENST00000504627 TSPY10P0CW01 314 aa28.22■■■□□ 2.11
SQSTM1-209ENST00000504627 ZMYM3Q14202 1370 aa28.21■■■□□ 2.11
SQSTM1-209ENST00000504627 DHX29Q7Z478 1369 aaKnown RBP28.19■■■□□ 2.1
SQSTM1-209ENST00000504627 PPP6R1Q9UPN7 881 aa28.17■■■□□ 2.1
SQSTM1-209ENST00000504627 MROH2AA6NES4 1674 aa28.16■■■□□ 2.1
SQSTM1-209ENST00000504627 KIF3BO15066 747 aa28.14■■■□□ 2.1
SQSTM1-209ENST00000504627 ARHGEF5Q12774 1597 aa28.14■■■□□ 2.1
SQSTM1-209ENST00000504627 CLTCQ00610 1675 aaKnown RBP28.13■■■□□ 2.09
SQSTM1-209ENST00000504627 MYOM3Q5VTT5 1437 aa28.13■■■□□ 2.09
SQSTM1-209ENST00000504627 DMRT2Q9Y5R5 561 aa28.13■■■□□ 2.09
SQSTM1-209ENST00000504627 NPATQ14207 1427 aa28.12■■■□□ 2.09
SQSTM1-209ENST00000504627 MIA2Q96PC5 1412 aa28.11■■■□□ 2.09
SQSTM1-209ENST00000504627 FBXO41Q8TF61 875 aa28.1■■■□□ 2.09
SQSTM1-209ENST00000504627 PTPRKQ15262 1439 aa28.03■■■□□ 2.08
SQSTM1-209ENST00000504627 STRCQ7RTU9 1775 aa28.02■■■□□ 2.08
SQSTM1-209ENST00000504627 WASHC2CQ9Y4E1 1318 aa28.02■■■□□ 2.08
SQSTM1-209ENST00000504627 MAST1Q9Y2H9 1570 aa27.99■■■□□ 2.07
SQSTM1-209ENST00000504627 CERKQ8TCT0 537 aa27.98■■■□□ 2.07
SQSTM1-209ENST00000504627 KDM5DQ9BY66 1539 aa27.97■■■□□ 2.07
SQSTM1-209ENST00000504627 NCOA1Q15788 1441 aa27.95■■■□□ 2.07
SQSTM1-209ENST00000504627 PTPRTO14522 1441 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms