RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.96■■□□□ 1.11
LSM6-204ENST00000504181 HNRNPUL2Q1KMD3 747 aaKnown RBP21.96■■□□□ 1.11
LSM6-204ENST00000504181 FAM9AQ8IZU1 332 aaPredicted RBP21.96■■□□□ 1.11
LSM6-204ENST00000504181 CEBPAP49715 358 aaPredicted RBP21.94■■□□□ 1.1
LSM6-204ENST00000504181 UHRF1BP1Q6BDS2 1440 aa21.94■■□□□ 1.1
LSM6-204ENST00000504181 IQSEC2Q5JU85 1478 aa21.93■■□□□ 1.1
LSM6-204ENST00000504181 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
LSM6-204ENST00000504181 MAGI2Q86UL8 1455 aa21.92■■□□□ 1.1
LSM6-204ENST00000504181 PTPRTO14522 1441 aa21.92■■□□□ 1.1
LSM6-204ENST00000504181 C3P01024 1663 aa21.9■■□□□ 1.1
LSM6-204ENST00000504181 SAMD9Q5K651 1589 aa21.9■■□□□ 1.1
LSM6-204ENST00000504181 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.9■■□□□ 1.13e-11■■■■■ 27.7
LSM6-204ENST00000504181 NUP153P49790 1475 aaKnown RBP21.86■■□□□ 1.09
LSM6-204ENST00000504181 ATP10AO60312 1499 aa21.83■■□□□ 1.09
LSM6-204ENST00000504181 C9orf84Q5VXU9 1444 aa21.83■■□□□ 1.09
LSM6-204ENST00000504181 MED1Q15648 1581 aaPredicted RBP21.81■■□□□ 1.08
LSM6-204ENST00000504181 PRXQ9BXM0 1461 aa21.79■■□□□ 1.08
LSM6-204ENST00000504181 SCAPERQ9BY12 1400 aa21.77■■□□□ 1.08
LSM6-204ENST00000504181 MYO5CQ9NQX4 1742 aa21.75■■□□□ 1.07
LSM6-204ENST00000504181 PLEKHD1A6NEE1 506 aa21.75■■□□□ 1.07
LSM6-204ENST00000504181 UBAP1LF5GYI3 381 aa21.75■■□□□ 1.07
LSM6-204ENST00000504181 SUPT6HQ7KZ85 1726 aaKnown RBP21.75■■□□□ 1.07
LSM6-204ENST00000504181 NCOA1Q15788 1441 aa21.73■■□□□ 1.07
LSM6-204ENST00000504181 CAMSAP1Q5T5Y3 1602 aa21.71■■□□□ 1.07
LSM6-204ENST00000504181 DIP2CQ9Y2E4 1556 aa21.68■■□□□ 1.06
LSM6-204ENST00000504181 ZNF335Q9H4Z2 1342 aaPredicted RBP21.66■■□□□ 1.06
LSM6-204ENST00000504181 ABCA6Q8N139 1617 aa21.66■■□□□ 1.06
LSM6-204ENST00000504181 PLCH2O75038 1416 aa21.64■■□□□ 1.06
LSM6-204ENST00000504181 KDM5CP41229 1560 aa21.64■■□□□ 1.05
LSM6-204ENST00000504181 TRAPPC8Q9Y2L5 1435 aa21.63■■□□□ 1.05
LSM6-204ENST00000504181 REREQ9P2R6 1566 aa21.63■■□□□ 1.05
LSM6-204ENST00000504181 CDK13Q14004 1512 aaKnown RBP21.62■■□□□ 1.05
LSM6-204ENST00000504181 ZNF518AQ6AHZ1 1483 aa21.61■■□□□ 1.05
LSM6-204ENST00000504181 MROH2AA6NES4 1674 aa21.59■■□□□ 1.05
LSM6-204ENST00000504181 HSPA1LP34931 641 aa21.58■■□□□ 1.05
LSM6-204ENST00000504181 RANGAP1P46060 587 aaPredicted RBP21.58■■□□□ 1.05
LSM6-204ENST00000504181 ESF1Q9H501 851 aaKnown RBP21.58■■□□□ 1.05
LSM6-204ENST00000504181 ZNF142P52746 1687 aaPredicted RBP21.58■■□□□ 1.05
LSM6-204ENST00000504181 SCAF1Q9H7N4 1312 aaKnown RBP21.57■■□□□ 1.04
LSM6-204ENST00000504181 NCKAP5LQ9HCH0 1330 aa21.57■■□□□ 1.04
LSM6-204ENST00000504181 MYT1LQ9UL68 1186 aa21.57■■□□□ 1.04
LSM6-204ENST00000504181 AGLP35573 1532 aa21.55■■□□□ 1.04
LSM6-204ENST00000504181 KIF14Q15058 1648 aa21.55■■□□□ 1.04
LSM6-204ENST00000504181 MYO3AQ8NEV4 1616 aa21.55■■□□□ 1.04
LSM6-204ENST00000504181 EFCAB2Q5VUJ9 269 aa21.53■■□□□ 1.04
LSM6-204ENST00000504181 PIP4K2BP78356 416 aa21.52■■□□□ 1.04
LSM6-204ENST00000504181 AFAP1Q8N556 730 aa21.52■■□□□ 1.04
LSM6-204ENST00000504181 ARHGAP5Q13017 1502 aa21.51■■□□□ 1.03
LSM6-204ENST00000504181 CDC42BPBQ9Y5S2 1711 aa21.51■■□□□ 1.03
LSM6-204ENST00000504181 KIDINS220Q9ULH0 1771 aa21.48■■□□□ 1.03
LSM6-204ENST00000504181 CNTLNQ9NXG0 1405 aa21.48■■□□□ 1.03
LSM6-204ENST00000504181 CLTCQ00610 1675 aaKnown RBP21.48■■□□□ 1.03
LSM6-204ENST00000504181 ITSN2Q9NZM3 1697 aa21.48■■□□□ 1.03
LSM6-204ENST00000504181 NPATQ14207 1427 aa21.47■■□□□ 1.03
LSM6-204ENST00000504181 POLR1AO95602 1720 aaPredicted RBP21.47■■□□□ 1.03
LSM6-204ENST00000504181 PLA2R1Q13018 1463 aa21.46■■□□□ 1.03
LSM6-204ENST00000504181 CEP170BQ9Y4F5 1589 aaPredicted RBP21.46■■□□□ 1.03
LSM6-204ENST00000504181 MLH3Q9UHC1 1453 aa21.45■■□□□ 1.03
LSM6-204ENST00000504181 TCOF1Q13428 1488 aaKnown RBP21.45■■□□□ 1.02
LSM6-204ENST00000504181 PKD2Q13563 968 aa21.42■■□□□ 1.02
LSM6-204ENST00000504181 TOM1O60784 492 aa21.4■■□□□ 1.02
LSM6-204ENST00000504181 PPP6R1Q9UPN7 881 aa21.39■■□□□ 1.01
LSM6-204ENST00000504181 LRRIQ1Q96JM4 1722 aa21.38■■□□□ 1.01
LSM6-204ENST00000504181 PREX2Q70Z35 1606 aa21.38■■□□□ 1.01
LSM6-204ENST00000504181 CPS1P31327 1500 aa21.38■■□□□ 1.01
LSM6-204ENST00000504181 ABCC1P33527 1531 aa21.38■■□□□ 1.01
LSM6-204ENST00000504181 ZMYM3Q14202 1370 aa21.37■■□□□ 1.01
LSM6-204ENST00000504181 ALKQ9UM73 1620 aa21.37■■□□□ 1.01
LSM6-204ENST00000504181 DNMT1P26358 1616 aaKnown RBP21.33■■□□□ 1
LSM6-204ENST00000504181 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
LSM6-204ENST00000504181 ATP1B4Q9UN42 357 aaPredicted RBP21.32■■□□□ 1
LSM6-204ENST00000504181 NEURL4Q96JN8 1562 aa21.31■■□□□ 1
LSM6-204ENST00000504181 CDC42BPAQ5VT25 1732 aa21.3■■□□□ 1
LSM6-204ENST00000504181 SHANK2Q9UPX8 1470 aa21.3■■□□□ 1
LSM6-204ENST00000504181 TROQ12816 1431 aaPredicted RBP21.29■■□□□ 1
LSM6-204ENST00000504181 PTPRKQ15262 1439 aa21.29■■□□□ 1
LSM6-204ENST00000504181 SAMD9LQ8IVG5 1584 aa21.27■□□□□ 0.99
LSM6-204ENST00000504181 CDK11AQ9UQ88 783 aaPredicted RBP21.26■□□□□ 0.99
LSM6-204ENST00000504181 CLIP1P30622 1438 aa21.26■□□□□ 0.99
LSM6-204ENST00000504181 SETD1AO15047 1707 aaKnown RBP21.26■□□□□ 0.99
LSM6-204ENST00000504181 VWDEQ8N2E2 1590 aa21.25■□□□□ 0.99
LSM6-204ENST00000504181 STRCP1A6NGW2 1772 aa21.24■□□□□ 0.99
LSM6-204ENST00000504181 A2ML1A8K2U0 1454 aa21.24■□□□□ 0.99
LSM6-204ENST00000504181 RGS17Q9UGC6 210 aaPredicted RBP21.23■□□□□ 0.99
LSM6-204ENST00000504181 PLXNC1O60486 1568 aa21.21■□□□□ 0.99
LSM6-204ENST00000504181 RNF17Q9BXT8 1623 aaKnown RBP21.21■□□□□ 0.99
LSM6-204ENST00000504181 FMN1Q68DA7 1419 aa21.19■□□□□ 0.98
LSM6-204ENST00000504181 ATP7AQ04656 1500 aa21.17■□□□□ 0.98
LSM6-204ENST00000504181 INO80Q9ULG1 1556 aaPredicted RBP21.16■□□□□ 0.98
LSM6-204ENST00000504181 SYCP2Q9BX26 1530 aa21.16■□□□□ 0.98
LSM6-204ENST00000504181 IQGAP1P46940 1657 aa21.15■□□□□ 0.98
LSM6-204ENST00000504181 ADGBQ8N7X0 1667 aa21.15■□□□□ 0.98
LSM6-204ENST00000504181 SYNMO15061 1565 aa21.14■□□□□ 0.97
LSM6-204ENST00000504181 GGT6Q6P531 493 aa21.13■□□□□ 0.97
LSM6-204ENST00000504181 A2MP01023 1474 aa21.12■□□□□ 0.97
LSM6-204ENST00000504181 DEPDC5O75140 1603 aa21.11■□□□□ 0.97
LSM6-204ENST00000504181 XIRP1Q702N8 1843 aaKnown RBP21.11■□□□□ 0.97
LSM6-204ENST00000504181 SPAG9O60271 1321 aaKnown RBP21.1■□□□□ 0.97
LSM6-204ENST00000504181 LRRC7Q96NW7 1537 aa21.09■□□□□ 0.97
LSM6-204ENST00000504181 POTEAQ6S8J7 498 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms