RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	VPS8	Q8N3P4	1428 aa		18.95	■□□□□ 0.62
APTX-233	ENST00000496030	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	18.95	■□□□□ 0.62
APTX-233	ENST00000496030	HNRNPUL2	Q1KMD3	747 aa	Known RBP	18.95	■□□□□ 0.62
APTX-233	ENST00000496030	DENND4B	O75064	1496 aa	Predicted RBP	18.95	■□□□□ 0.62
APTX-233	ENST00000496030	FER1L4	A9Z1Z3	1794 aa		18.93	■□□□□ 0.62
APTX-233	ENST00000496030	YEATS2	Q9ULM3	1422 aa		18.92	■□□□□ 0.62
APTX-233	ENST00000496030	FANCA	O15360	1455 aa		18.92	■□□□□ 0.62
APTX-233	ENST00000496030	TTC37	Q6PGP7	1564 aa		18.91	■□□□□ 0.62
APTX-233	ENST00000496030	PLEKHD1	A6NEE1	506 aa		18.91	■□□□□ 0.62
APTX-233	ENST00000496030	CCDC18	Q5T9S5	1454 aa		18.9	■□□□□ 0.62
APTX-233	ENST00000496030	ZMYM4	Q5VZL5	1548 aa		18.9	■□□□□ 0.62
APTX-233	ENST00000496030	SPATA31D1	Q6ZQQ2	1576 aa		18.9	■□□□□ 0.62
APTX-233	ENST00000496030	POGZ	Q7Z3K3	1410 aa		18.9	■□□□□ 0.62
APTX-233	ENST00000496030	AKNA	Q7Z591	1439 aa		18.9	■□□□□ 0.62
APTX-233	ENST00000496030	MLEC	Q14165	292 aa		18.89	■□□□□ 0.61
APTX-233	ENST00000496030	ZFYVE16	Q7Z3T8	1539 aa		18.89	■□□□□ 0.61
APTX-233	ENST00000496030	STRC	Q7RTU9	1775 aa		18.88	■□□□□ 0.61
APTX-233	ENST00000496030	PREX1	Q8TCU6	1659 aa		18.87	■□□□□ 0.61
APTX-233	ENST00000496030	CDK11A	Q9UQ88	783 aa	Predicted RBP	18.86	■□□□□ 0.61
APTX-233	ENST00000496030	CFAP74	Q9C0B2	1584 aa		18.85	■□□□□ 0.61
APTX-233	ENST00000496030	TRO	Q12816	1431 aa	Predicted RBP	18.84	■□□□□ 0.61
APTX-233	ENST00000496030	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	18.83	■□□□□ 0.6
APTX-233	ENST00000496030	ARHGEF12	Q9NZN5	1544 aa		18.81	■□□□□ 0.6
APTX-233	ENST00000496030	CEBPA	P49715	358 aa	Predicted RBP	18.8	■□□□□ 0.6
APTX-233	ENST00000496030	MAGI2	Q86UL8	1455 aa		18.79	■□□□□ 0.6
APTX-233	ENST00000496030	KIF14	Q15058	1648 aa		18.78	■□□□□ 0.6
APTX-233	ENST00000496030	TIAM1	Q13009	1591 aa		18.78	■□□□□ 0.6
APTX-233	ENST00000496030	MAP3K1	Q13233	1512 aa		18.78	■□□□□ 0.6
APTX-233	ENST00000496030	KANK4	Q5T7N3	995 aa	Predicted RBP	18.74	■□□□□ 0.59
APTX-233	ENST00000496030	MTUS2	Q5JR59	1369 aa		18.73	■□□□□ 0.59
APTX-233	ENST00000496030	DMRT2	Q9Y5R5	561 aa		18.73	■□□□□ 0.59
APTX-233	ENST00000496030	SCAPER	Q9BY12	1400 aa		18.73	■□□□□ 0.59
APTX-233	ENST00000496030	ATP10A	O60312	1499 aa		18.72	■□□□□ 0.59
APTX-233	ENST00000496030	LTBP4	Q8N2S1	1624 aa		18.72	■□□□□ 0.59
APTX-233	ENST00000496030	LRRC9	Q6ZRR7	1453 aa		18.71	■□□□□ 0.59
APTX-233	ENST00000496030	C9orf84	Q5VXU9	1444 aa		18.71	■□□□□ 0.59
APTX-233	ENST00000496030	UHRF1BP1	Q6BDS2	1440 aa		18.71	■□□□□ 0.59
APTX-233	ENST00000496030	EHBP1L1	Q8N3D4	1523 aa		18.7	■□□□□ 0.58
APTX-233	ENST00000496030	SETD1B	Q9UPS6	1966 aa	Known RBP	18.7	■□□□□ 0.58
APTX-233	ENST00000496030	PLCH2	O75038	1416 aa		18.69	■□□□□ 0.58
APTX-233	ENST00000496030	PTPRT	O14522	1441 aa		18.68	■□□□□ 0.58
APTX-233	ENST00000496030	APLP2	Q06481	763 aa		18.65	■□□□□ 0.58
APTX-233	ENST00000496030	C3	P01024	1663 aa		18.65	■□□□□ 0.58
APTX-233	ENST00000496030	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.64	■□□□□ 0.58
APTX-233	ENST00000496030	MYO5C	Q9NQX4	1742 aa		18.64	■□□□□ 0.57
APTX-233	ENST00000496030	NCOA2	Q15596	1464 aa		18.64	■□□□□ 0.57
APTX-233	ENST00000496030	CDC42BPA	Q5VT25	1732 aa		18.63	■□□□□ 0.57
APTX-233	ENST00000496030	CDC42BPB	Q9Y5S2	1711 aa		18.63	■□□□□ 0.57
APTX-233	ENST00000496030	IQSEC2	Q5JU85	1478 aa		18.62	■□□□□ 0.57
APTX-233	ENST00000496030	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.61	■□□□□ 0.57
APTX-233	ENST00000496030	PREX2	Q70Z35	1606 aa		18.61	■□□□□ 0.57
APTX-233	ENST00000496030	CCNB3	Q8WWL7	1395 aa		18.6	■□□□□ 0.57
APTX-233	ENST00000496030	EFCAB2	Q5VUJ9	269 aa		18.6	■□□□□ 0.57
APTX-233	ENST00000496030	DIP2C	Q9Y2E4	1556 aa		18.59	■□□□□ 0.57
APTX-233	ENST00000496030	KDM5C	P41229	1560 aa		18.58	■□□□□ 0.56
APTX-233	ENST00000496030	ARHGAP5	Q13017	1502 aa		18.58	■□□□□ 0.56
APTX-233	ENST00000496030	NCOA1	Q15788	1441 aa		18.57	■□□□□ 0.56
APTX-233	ENST00000496030	AFAP1	Q8N556	730 aa		18.56	■□□□□ 0.56
APTX-233	ENST00000496030	ZNF518A	Q6AHZ1	1483 aa		18.56	■□□□□ 0.56
APTX-233	ENST00000496030	ABCA6	Q8N139	1617 aa		18.56	■□□□□ 0.56
APTX-233	ENST00000496030	RERE	Q9P2R6	1566 aa		18.55	■□□□□ 0.56
APTX-233	ENST00000496030	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.54	■□□□□ 0.56
APTX-233	ENST00000496030	TRAPPC8	Q9Y2L5	1435 aa		18.53	■□□□□ 0.56
APTX-233	ENST00000496030	ZNF644	Q9H582	1327 aa	Predicted RBP	18.52	■□□□□ 0.56
APTX-233	ENST00000496030	SAMD9L	Q8IVG5	1584 aa		18.51	■□□□□ 0.55
APTX-233	ENST00000496030	PPARGC1B	Q86YN6	1023 aa	Known RBP	18.51	■□□□□ 0.55
APTX-233	ENST00000496030	CAMSAP1	Q5T5Y3	1602 aa		18.51	■□□□□ 0.55
APTX-233	ENST00000496030	ITSN2	Q9NZM3	1697 aa		18.5	■□□□□ 0.55
APTX-233	ENST00000496030	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	18.5	■□□□□ 0.55
APTX-233	ENST00000496030	ZNF777	Q9ULD5	760 aa	Predicted RBP	18.5	■□□□□ 0.55
APTX-233	ENST00000496030	MYOM3	Q5VTT5	1437 aa		18.49	■□□□□ 0.55
APTX-233	ENST00000496030	UBAP1L	F5GYI3	381 aa		18.49	■□□□□ 0.55
APTX-233	ENST00000496030	ABCC1	P33527	1531 aa		18.49	■□□□□ 0.55
APTX-233	ENST00000496030	MYT1L	Q9UL68	1186 aa		18.48	■□□□□ 0.55
APTX-233	ENST00000496030	AGL	P35573	1532 aa		18.48	■□□□□ 0.55
APTX-233	ENST00000496030	KIAA1107	Q9UPP5	1409 aa		18.47	■□□□□ 0.55
APTX-233	ENST00000496030	MLH3	Q9UHC1	1453 aa		18.46	■□□□□ 0.55
APTX-233	ENST00000496030	MIA2	Q96PC5	1412 aa		18.46	■□□□□ 0.55
APTX-233	ENST00000496030	NCKAP5L	Q9HCH0	1330 aa		18.46	■□□□□ 0.55
APTX-233	ENST00000496030	HNRNPM	P52272	730 aa	Known RBP eCLIP	18.45	■□□□□ 0.54
APTX-233	ENST00000496030	ESF1	Q9H501	851 aa	Known RBP	18.44	■□□□□ 0.54
APTX-233	ENST00000496030	MBD5	Q9P267	1494 aa		18.44	■□□□□ 0.54
APTX-233	ENST00000496030	MED1	Q15648	1581 aa	Predicted RBP	18.43	■□□□□ 0.54
APTX-233	ENST00000496030	PLEKHH2	Q8IVE3	1493 aa		18.43	■□□□□ 0.54
APTX-233	ENST00000496030	SYCP2	Q9BX26	1530 aa		18.43	■□□□□ 0.54
APTX-233	ENST00000496030	KIDINS220	Q9ULH0	1771 aa		18.42	■□□□□ 0.54
APTX-233	ENST00000496030	FGD6	Q6ZV73	1430 aa		18.42	■□□□□ 0.54
APTX-233	ENST00000496030	CAMSAP2	Q08AD1	1489 aa		18.42	■□□□□ 0.54
APTX-233	ENST00000496030	MROH2A	A6NES4	1674 aa		18.41	■□□□□ 0.54
APTX-233	ENST00000496030	NPAT	Q14207	1427 aa		18.4	■□□□□ 0.54
APTX-233	ENST00000496030	CNTLN	Q9NXG0	1405 aa		18.4	■□□□□ 0.54
APTX-233	ENST00000496030	TCOF1	Q13428	1488 aa	Known RBP	18.38	■□□□□ 0.53
APTX-233	ENST00000496030	MYO3A	Q8NEV4	1616 aa		18.38	■□□□□ 0.53
APTX-233	ENST00000496030	PTPN23	Q9H3S7	1636 aa		18.38	■□□□□ 0.53
APTX-233	ENST00000496030	ZNF142	P52746	1687 aa	Predicted RBP	18.38	■□□□□ 0.53
APTX-233	ENST00000496030	HSPA1L	P34931	641 aa		18.37	■□□□□ 0.53
APTX-233	ENST00000496030	ARHGEF5	Q12774	1597 aa		18.35	■□□□□ 0.53
APTX-233	ENST00000496030	ZMYM3	Q14202	1370 aa		18.35	■□□□□ 0.53
APTX-233	ENST00000496030	PLA2R1	Q13018	1463 aa		18.34	■□□□□ 0.53
APTX-233	ENST00000496030	CLTC	Q00610	1675 aa	Known RBP	18.34	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms