RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, humanhuman

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-233ENST00000496030 NISCHQ9Y2I1 1504 aa28.62■■■□□ 2.17
APTX-233ENST00000496030 ABCC9O60706 1549 aa26.33■■□□□ 1.81
APTX-233ENST00000496030 CCDC180Q9P1Z9 1646 aa25.67■■□□□ 1.7
APTX-233ENST00000496030 DNAJC5BQ9UF47 199 aa25.3■■□□□ 1.64
APTX-233ENST00000496030 RB1CC1Q8TDY2 1594 aa24.72■■□□□ 1.55
APTX-233ENST00000496030 PABPN1Q86U42 306 aaKnown RBP eCLIP24.41■■□□□ 1.5
APTX-233ENST00000496030 NACADO15069 1562 aa24.39■■□□□ 1.5
APTX-233ENST00000496030 UNC13AQ9UPW8 1703 aa24.29■■□□□ 1.48
APTX-233ENST00000496030 DCAF8L2P0C7V8 631 aa24.15■■□□□ 1.46
APTX-233ENST00000496030 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
APTX-233ENST00000496030 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
APTX-233ENST00000496030 MYO15BQ96JP2 1530 aa23.83■■□□□ 1.41
APTX-233ENST00000496030 CC2D2AQ9P2K1 1620 aa23.75■■□□□ 1.39
APTX-233ENST00000496030 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
APTX-233ENST00000496030 DCAF1Q9Y4B6 1507 aa23.68■■□□□ 1.38
APTX-233ENST00000496030 DNAJC5Q9H3Z4 198 aa23.6■■□□□ 1.37
APTX-233ENST00000496030 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
APTX-233ENST00000496030 EIF4G1Q04637 1599 aaKnown RBP23.53■■□□□ 1.36
APTX-233ENST00000496030 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
APTX-233ENST00000496030 CUX2O14529 1486 aa22.88■■□□□ 1.25
APTX-233ENST00000496030 ERCC6Q03468 1493 aa22.72■■□□□ 1.23
APTX-233ENST00000496030 NCAPD3P42695 1498 aa22.54■■□□□ 1.2
APTX-233ENST00000496030 NESP48681 1621 aa22.47■■□□□ 1.19
APTX-233ENST00000496030 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
APTX-233ENST00000496030 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
APTX-233ENST00000496030 TRIM41Q8WV44 630 aa22.33■■□□□ 1.17
APTX-233ENST00000496030 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
APTX-233ENST00000496030 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
APTX-233ENST00000496030 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
APTX-233ENST00000496030 KIF21AQ7Z4S6 1674 aa22.16■■□□□ 1.14
APTX-233ENST00000496030 BAZ1BQ9UIG0 1483 aaKnown RBP22.14■■□□□ 1.13
APTX-233ENST00000496030 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
APTX-233ENST00000496030 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
APTX-233ENST00000496030 MROH2BQ7Z745 1585 aa22.08■■□□□ 1.12
APTX-233ENST00000496030 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
APTX-233ENST00000496030 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
APTX-233ENST00000496030 RSF1Q96T23 1441 aaPredicted RBP21.91■■□□□ 1.1
APTX-233ENST00000496030 MRC2Q9UBG0 1479 aa21.88■■□□□ 1.09
APTX-233ENST00000496030 WDR62O43379 1518 aa21.86■■□□□ 1.09
APTX-233ENST00000496030 WIZO95785 1651 aa21.82■■□□□ 1.08
APTX-233ENST00000496030 CADPSQ9ULU8 1353 aa21.82■■□□□ 1.08
APTX-233ENST00000496030 OSCARQ8IYS5 282 aa21.71■■□□□ 1.07
APTX-233ENST00000496030 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
APTX-233ENST00000496030 FANCD2Q9BXW9 1451 aa21.6■■□□□ 1.05
APTX-233ENST00000496030 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
APTX-233ENST00000496030 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
APTX-233ENST00000496030 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
APTX-233ENST00000496030 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.04
APTX-233ENST00000496030 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
APTX-233ENST00000496030 SUPT5HO00267 1087 aaKnown RBP21.47■■□□□ 1.03
APTX-233ENST00000496030 CFTRP13569 1480 aa21.45■■□□□ 1.03
APTX-233ENST00000496030 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
APTX-233ENST00000496030 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
APTX-233ENST00000496030 ZNF608Q9ULD9 1512 aaPredicted RBP21.34■■□□□ 1.01
APTX-233ENST00000496030 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
APTX-233ENST00000496030 IFT140Q96RY7 1462 aa21.24■□□□□ 0.99
APTX-233ENST00000496030 TRHP20396 242 aaPredicted RBP21.23■□□□□ 0.99
APTX-233ENST00000496030 PRDM2Q13029 1718 aa21.23■□□□□ 0.99
APTX-233ENST00000496030 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
APTX-233ENST00000496030 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
APTX-233ENST00000496030 CHD1O14646 1710 aa21.17■□□□□ 0.98
APTX-233ENST00000496030 TOPBP1Q92547 1522 aa21.14■□□□□ 0.97
APTX-233ENST00000496030 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.96
APTX-233ENST00000496030 AEBP2Q6ZN18 517 aaPredicted RBP21.04■□□□□ 0.96
APTX-233ENST00000496030 TARBP1Q13395 1621 aaKnown RBP21.02■□□□□ 0.96
APTX-233ENST00000496030 FBLN2P98095 1184 aa20.99■□□□□ 0.95
APTX-233ENST00000496030 DNMBPQ6XZF7 1577 aa20.98■□□□□ 0.95
APTX-233ENST00000496030 ABCC8Q09428 1581 aa20.95■□□□□ 0.94
APTX-233ENST00000496030 CLASP1Q7Z460 1538 aa20.88■□□□□ 0.93
APTX-233ENST00000496030 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
APTX-233ENST00000496030 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
APTX-233ENST00000496030 TDRD9Q8NDG6 1382 aaKnown RBP20.82■□□□□ 0.92
APTX-233ENST00000496030 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
APTX-233ENST00000496030 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
APTX-233ENST00000496030 SOGA1O94964 1423 aa20.74■□□□□ 0.91
APTX-233ENST00000496030 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
APTX-233ENST00000496030 MAGI1Q96QZ7 1491 aaPredicted RBP20.69■□□□□ 0.9
APTX-233ENST00000496030 CUX1P39880 1505 aa20.68■□□□□ 0.9
APTX-233ENST00000496030 GAPVD1Q14C86 1478 aa20.68■□□□□ 0.9
APTX-233ENST00000496030 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
APTX-233ENST00000496030 FGD5Q6ZNL6 1462 aa20.66■□□□□ 0.9
APTX-233ENST00000496030 SYNJ2O15056 1496 aa20.63■□□□□ 0.89
APTX-233ENST00000496030 GRIN2BQ13224 1484 aa20.62■□□□□ 0.89
APTX-233ENST00000496030 WRNQ14191 1432 aaPredicted RBP eCLIP20.6■□□□□ 0.89
APTX-233ENST00000496030 ERCC6L2Q5T890 1561 aa20.57■□□□□ 0.88
APTX-233ENST00000496030 PBRM1Q86U86 1689 aa20.57■□□□□ 0.88
APTX-233ENST00000496030 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
APTX-233ENST00000496030 BIVM-ERCC5R4GMW8 1640 aa20.53■□□□□ 0.88
APTX-233ENST00000496030 KIF13AQ9H1H9 1805 aa20.47■□□□□ 0.87
APTX-233ENST00000496030 ABCA5Q8WWZ7 1642 aa20.43■□□□□ 0.86
APTX-233ENST00000496030 CEP170Q5SW79 1584 aa20.42■□□□□ 0.86
APTX-233ENST00000496030 GRIN2AQ12879 1464 aa20.38■□□□□ 0.85
APTX-233ENST00000496030 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
APTX-233ENST00000496030 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
APTX-233ENST00000496030 NUP160Q12769 1436 aa20.34■□□□□ 0.85
APTX-233ENST00000496030 ADAMTS12P58397 1594 aa20.32■□□□□ 0.84
APTX-233ENST00000496030 ILDR1Q86SU0 546 aaPredicted RBP20.27■□□□□ 0.84
APTX-233ENST00000496030 KDM4FA0A1W2PPD8 638 aa20.25■□□□□ 0.83
APTX-233ENST00000496030 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
APTX-233ENST00000496030 ABCC10Q5T3U5 1492 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms