RNA–Protein interactions for RNA: ENST00000491521.1

CDK9-204, Transcript of cyclin dependent kinase 9, humanhuman

TSL 3

Gene CDK9, Length 510 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-204ENST00000491521 ARHGAP5Q13017 1502 aa21.81■■□□□ 1.08
CDK9-204ENST00000491521 ZFYVE16Q7Z3T8 1539 aa21.78■■□□□ 1.08
CDK9-204ENST00000491521 POGZQ7Z3K3 1410 aa21.78■■□□□ 1.08
CDK9-204ENST00000491521 YEATS2Q9ULM3 1422 aa21.77■■□□□ 1.08
CDK9-204ENST00000491521 ZMYM4Q5VZL5 1548 aa21.76■■□□□ 1.07
CDK9-204ENST00000491521 BCORL1Q5H9F3 1711 aa21.75■■□□□ 1.07
CDK9-204ENST00000491521 ADAMTSL3P82987 1691 aa21.75■■□□□ 1.07
CDK9-204ENST00000491521 CDC42BPBQ9Y5S2 1711 aa21.74■■□□□ 1.07
CDK9-204ENST00000491521 CEP162Q5TB80 1403 aa21.73■■□□□ 1.07
CDK9-204ENST00000491521 MYT1LQ9UL68 1186 aa21.72■■□□□ 1.07
CDK9-204ENST00000491521 HECW2Q9P2P5 1572 aa21.72■■□□□ 1.07
CDK9-204ENST00000491521 MADDQ8WXG6 1647 aa21.72■■□□□ 1.07
CDK9-204ENST00000491521 PREX2Q70Z35 1606 aa21.71■■□□□ 1.07
CDK9-204ENST00000491521 SIGLEC1Q9BZZ2 1709 aa21.7■■□□□ 1.06
CDK9-204ENST00000491521 PTPRMP28827 1452 aa21.7■■□□□ 1.06
CDK9-204ENST00000491521 MAGI2Q86UL8 1455 aa21.7■■□□□ 1.06
CDK9-204ENST00000491521 MLECQ14165 292 aa21.69■■□□□ 1.06
CDK9-204ENST00000491521 PLPPR3Q6T4P5 718 aa21.69■■□□□ 1.06
CDK9-204ENST00000491521 CDC42BPAQ5VT25 1732 aa21.69■■□□□ 1.06
CDK9-204ENST00000491521 AFAP1Q8N556 730 aa21.68■■□□□ 1.06
CDK9-204ENST00000491521 RIMS1Q86UR5 1692 aaKnown RBP21.67■■□□□ 1.06
CDK9-204ENST00000491521 ZNF518AQ6AHZ1 1483 aa21.67■■□□□ 1.06
CDK9-204ENST00000491521 ZNF777Q9ULD5 760 aaPredicted RBP21.67■■□□□ 1.06
CDK9-204ENST00000491521 MTUS2Q5JR59 1369 aa21.64■■□□□ 1.06
CDK9-204ENST00000491521 ATP10AO60312 1499 aa21.63■■□□□ 1.05
CDK9-204ENST00000491521 ABCC1P33527 1531 aa21.62■■□□□ 1.05
CDK9-204ENST00000491521 ITSN2Q9NZM3 1697 aa21.62■■□□□ 1.05
CDK9-204ENST00000491521 KDM5CP41229 1560 aa21.61■■□□□ 1.05
CDK9-204ENST00000491521 ARHGEF12Q9NZN5 1544 aa21.61■■□□□ 1.05
CDK9-204ENST00000491521 C9orf84Q5VXU9 1444 aa21.61■■□□□ 1.05
CDK9-204ENST00000491521 TRAPPC8Q9Y2L5 1435 aa21.61■■□□□ 1.05
CDK9-204ENST00000491521 GPATCH8Q9UKJ3 1502 aaKnown RBP21.59■■□□□ 1.05
CDK9-204ENST00000491521 CCNB3Q8WWL7 1395 aa21.59■■□□□ 1.05
CDK9-204ENST00000491521 FER1L4A9Z1Z3 1794 aa21.58■■□□□ 1.04
CDK9-204ENST00000491521 SAMD9LQ8IVG5 1584 aa21.57■■□□□ 1.04
CDK9-204ENST00000491521 CFDP1Q9UEE9 299 aaPredicted RBP21.56■■□□□ 1.04
CDK9-204ENST00000491521 DIP2CQ9Y2E4 1556 aa21.56■■□□□ 1.04
CDK9-204ENST00000491521 ABCA6Q8N139 1617 aa21.55■■□□□ 1.04
CDK9-204ENST00000491521 SYCP2Q9BX26 1530 aa21.55■■□□□ 1.04
CDK9-204ENST00000491521 HNRNPMP52272 730 aaKnown RBP eCLIP21.54■■□□□ 1.04
CDK9-204ENST00000491521 EHBP1L1Q8N3D4 1523 aa21.54■■□□□ 1.04
CDK9-204ENST00000491521 MLH3Q9UHC1 1453 aa21.52■■□□□ 1.04
CDK9-204ENST00000491521 TIAM1Q13009 1591 aa21.5■■□□□ 1.03
CDK9-204ENST00000491521 KIDINS220Q9ULH0 1771 aa21.49■■□□□ 1.03
CDK9-204ENST00000491521 SPAG9O60271 1321 aaKnown RBP21.48■■□□□ 1.03
CDK9-204ENST00000491521 ZNF644Q9H582 1327 aaPredicted RBP21.47■■□□□ 1.03
CDK9-204ENST00000491521 VPS8Q8N3P4 1428 aa21.46■■□□□ 1.03
CDK9-204ENST00000491521 PLEKHH2Q8IVE3 1493 aa21.45■■□□□ 1.03
CDK9-204ENST00000491521 CEBPAP49715 358 aaPredicted RBP21.45■■□□□ 1.02
CDK9-204ENST00000491521 LMTK3Q96Q04 1460 aa21.45■■□□□ 1.02
CDK9-204ENST00000491521 REREQ9P2R6 1566 aa21.44■■□□□ 1.02
CDK9-204ENST00000491521 SUPT6HQ7KZ85 1726 aaKnown RBP21.44■■□□□ 1.02
CDK9-204ENST00000491521 KIAA1107Q9UPP5 1409 aa21.43■■□□□ 1.02
CDK9-204ENST00000491521 HSPA2P54652 639 aa21.42■■□□□ 1.02
CDK9-204ENST00000491521 NCOA2Q15596 1464 aa21.42■■□□□ 1.02
CDK9-204ENST00000491521 ATP7AQ04656 1500 aa21.41■■□□□ 1.02
CDK9-204ENST00000491521 ESF1Q9H501 851 aaKnown RBP21.41■■□□□ 1.02
CDK9-204ENST00000491521 AGLP35573 1532 aa21.39■■□□□ 1.01
CDK9-204ENST00000491521 INO80Q9ULG1 1556 aaPredicted RBP21.38■■□□□ 1.01
CDK9-204ENST00000491521 LRRC9Q6ZRR7 1453 aa21.35■■□□□ 1.01
CDK9-204ENST00000491521 CAMSAP2Q08AD1 1489 aa21.33■■□□□ 1.01
CDK9-204ENST00000491521 KANK4Q5T7N3 995 aaPredicted RBP21.33■■□□□ 1.01
CDK9-204ENST00000491521 C3P01024 1663 aa21.33■■□□□ 1
CDK9-204ENST00000491521 A2MP01023 1474 aa21.32■■□□□ 1
CDK9-204ENST00000491521 MBD5Q9P267 1494 aa21.32■■□□□ 1
CDK9-204ENST00000491521 PREX1Q8TCU6 1659 aa21.32■■□□□ 1
CDK9-204ENST00000491521 ILDR1Q86SU0 546 aaPredicted RBP21.32■■□□□ 1
CDK9-204ENST00000491521 ADGBQ8N7X0 1667 aa21.29■■□□□ 1
CDK9-204ENST00000491521 PLXNC1O60486 1568 aa21.28■■□□□ 1
CDK9-204ENST00000491521 CCDC141Q6ZP82 1450 aa21.28■■□□□ 1
CDK9-204ENST00000491521 GGT6Q6P531 493 aa21.28■■□□□ 1
CDK9-204ENST00000491521 APLP2Q06481 763 aa21.27■■□□□ 1
CDK9-204ENST00000491521 UHRF1BP1Q6BDS2 1440 aa21.26■□□□□ 0.99
CDK9-204ENST00000491521 CNTLNQ9NXG0 1405 aa21.26■□□□□ 0.99
CDK9-204ENST00000491521 MAP3K1Q13233 1512 aa21.25■□□□□ 0.99
CDK9-204ENST00000491521 CLTCQ00610 1675 aaKnown RBP21.25■□□□□ 0.99
CDK9-204ENST00000491521 SETD1BQ9UPS6 1966 aaKnown RBP21.25■□□□□ 0.99
CDK9-204ENST00000491521 RTEL1-TNFRSF6BF6WH68 1400 aa21.23■□□□□ 0.99
CDK9-204ENST00000491521 MROH2AA6NES4 1674 aa21.21■□□□□ 0.99
CDK9-204ENST00000491521 TSPY4P0CV99 314 aa21.2■□□□□ 0.98
CDK9-204ENST00000491521 TSPY10P0CW01 314 aa21.2■□□□□ 0.98
CDK9-204ENST00000491521 ZMYM3Q14202 1370 aa21.2■□□□□ 0.98
CDK9-204ENST00000491521 ARHGEF5Q12774 1597 aa21.19■□□□□ 0.98
CDK9-204ENST00000491521 RSPH4AQ5TD94 716 aa21.19■□□□□ 0.98
CDK9-204ENST00000491521 DHX29Q7Z478 1369 aaKnown RBP21.19■□□□□ 0.98
CDK9-204ENST00000491521 MYOM3Q5VTT5 1437 aa21.19■□□□□ 0.98
CDK9-204ENST00000491521 KIF3BO15066 747 aa21.18■□□□□ 0.98
CDK9-204ENST00000491521 MIA2Q96PC5 1412 aa21.13■□□□□ 0.97
CDK9-204ENST00000491521 STRCQ7RTU9 1775 aa21.13■□□□□ 0.97
CDK9-204ENST00000491521 NPATQ14207 1427 aa21.12■□□□□ 0.97
CDK9-204ENST00000491521 PTPN23Q9H3S7 1636 aa21.09■□□□□ 0.97
CDK9-204ENST00000491521 PPP6R1Q9UPN7 881 aa21.09■□□□□ 0.97
CDK9-204ENST00000491521 PTPRKQ15262 1439 aa21.09■□□□□ 0.97
CDK9-204ENST00000491521 MAST1Q9Y2H9 1570 aa21.08■□□□□ 0.97
CDK9-204ENST00000491521 MYO3AQ8NEV4 1616 aa21.07■□□□□ 0.96
CDK9-204ENST00000491521 WASHC2CQ9Y4E1 1318 aa21.07■□□□□ 0.96
CDK9-204ENST00000491521 FBXO41Q8TF61 875 aa21.07■□□□□ 0.96
CDK9-204ENST00000491521 KDM5DQ9BY66 1539 aa21.06■□□□□ 0.96
CDK9-204ENST00000491521 DMRT2Q9Y5R5 561 aa21.06■□□□□ 0.96
CDK9-204ENST00000491521 CAMSAP1Q5T5Y3 1602 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms