RNA–Protein interactions for RNA: ENST00000491521.1

CDK9-204, Transcript of cyclin dependent kinase 9, humanhuman

TSL 3

Gene CDK9, Length 510 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-204ENST00000491521 NISCHQ9Y2I1 1504 aa33.32■■■□□ 2.92
CDK9-204ENST00000491521 CCDC180Q9P1Z9 1646 aa29.76■■■□□ 2.35
CDK9-204ENST00000491521 ABCC9O60706 1549 aa29.62■■■□□ 2.33
CDK9-204ENST00000491521 RB1CC1Q8TDY2 1594 aa28.24■■■□□ 2.11
CDK9-204ENST00000491521 DCAF8L2P0C7V8 631 aa28.19■■■□□ 2.1
CDK9-204ENST00000491521 NACADO15069 1562 aa28.07■■■□□ 2.08
CDK9-204ENST00000491521 MYO15BQ96JP2 1530 aa27.68■■■□□ 2.02
CDK9-204ENST00000491521 ZCCHC6Q5VYS8 1495 aaKnown RBP27.66■■■□□ 2.02
CDK9-204ENST00000491521 UNC13AQ9UPW8 1703 aa27.65■■■□□ 2.02
CDK9-204ENST00000491521 PABPN1Q86U42 306 aaKnown RBP eCLIP27.65■■■□□ 2.02
CDK9-204ENST00000491521 DNAJC5BQ9UF47 199 aa27.51■■□□□ 1.99
CDK9-204ENST00000491521 DCAF1Q9Y4B6 1507 aa27.46■■□□□ 1.99
CDK9-204ENST00000491521 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.98
CDK9-204ENST00000491521 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
CDK9-204ENST00000491521 SHROOM4Q9ULL8 1493 aa26.95■■□□□ 1.91
CDK9-204ENST00000491521 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
CDK9-204ENST00000491521 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
CDK9-204ENST00000491521 CECR2Q9BXF3 1484 aa26.62■■□□□ 1.85
CDK9-204ENST00000491521 SMARCA4P51532 1647 aa25.96■■□□□ 1.75
CDK9-204ENST00000491521 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
CDK9-204ENST00000491521 NCAPD3P42695 1498 aa25.89■■□□□ 1.73
CDK9-204ENST00000491521 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
CDK9-204ENST00000491521 SMARCA2P51531 1590 aa25.84■■□□□ 1.73
CDK9-204ENST00000491521 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
CDK9-204ENST00000491521 MROH2BQ7Z745 1585 aa25.72■■□□□ 1.71
CDK9-204ENST00000491521 BAZ1BQ9UIG0 1483 aaKnown RBP25.7■■□□□ 1.7
CDK9-204ENST00000491521 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
CDK9-204ENST00000491521 ERCC6Q03468 1493 aa25.57■■□□□ 1.68
CDK9-204ENST00000491521 NESP48681 1621 aa25.52■■□□□ 1.68
CDK9-204ENST00000491521 WIZO95785 1651 aa25.45■■□□□ 1.67
CDK9-204ENST00000491521 CUX2O14529 1486 aa25.32■■□□□ 1.64
CDK9-204ENST00000491521 LAMC3Q9Y6N6 1575 aa25.3■■□□□ 1.64
CDK9-204ENST00000491521 RSF1Q96T23 1441 aaPredicted RBP25.26■■□□□ 1.63
CDK9-204ENST00000491521 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.63
CDK9-204ENST00000491521 PDS5BQ9NTI5 1447 aa25.16■■□□□ 1.62
CDK9-204ENST00000491521 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
CDK9-204ENST00000491521 THOC2Q8NI27 1593 aaKnown RBP25.15■■□□□ 1.62
CDK9-204ENST00000491521 TOP2AP11388 1531 aaKnown RBP25.11■■□□□ 1.61
CDK9-204ENST00000491521 DNAJC5Q9H3Z4 198 aa25.02■■□□□ 1.6
CDK9-204ENST00000491521 MRC2Q9UBG0 1479 aa24.95■■□□□ 1.58
CDK9-204ENST00000491521 FANCD2Q9BXW9 1451 aa24.91■■□□□ 1.58
CDK9-204ENST00000491521 CEP164Q9UPV0 1460 aa24.91■■□□□ 1.58
CDK9-204ENST00000491521 CFTRP13569 1480 aa24.9■■□□□ 1.58
CDK9-204ENST00000491521 WDR62O43379 1518 aa24.85■■□□□ 1.57
CDK9-204ENST00000491521 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.57
CDK9-204ENST00000491521 PRDM2Q13029 1718 aa24.74■■□□□ 1.55
CDK9-204ENST00000491521 URB2Q14146 1524 aaKnown RBP24.69■■□□□ 1.54
CDK9-204ENST00000491521 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
CDK9-204ENST00000491521 TOPBP1Q92547 1522 aa24.46■■□□□ 1.51
CDK9-204ENST00000491521 DNMBPQ6XZF7 1577 aa24.39■■□□□ 1.5
CDK9-204ENST00000491521 IFT140Q96RY7 1462 aa24.38■■□□□ 1.49
CDK9-204ENST00000491521 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
CDK9-204ENST00000491521 ZNF608Q9ULD9 1512 aaPredicted RBP24.36■■□□□ 1.49
CDK9-204ENST00000491521 OSCARQ8IYS5 282 aa24.25■■□□□ 1.47
CDK9-204ENST00000491521 EIF4G3O43432 1585 aaKnown RBP24.24■■□□□ 1.47
CDK9-204ENST00000491521 POLA1P09884 1462 aaPredicted RBP24.22■■□□□ 1.47
CDK9-204ENST00000491521 TARBP1Q13395 1621 aaKnown RBP24.21■■□□□ 1.47
CDK9-204ENST00000491521 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
CDK9-204ENST00000491521 AQRO60306 1485 aaKnown RBP eCLIP24.18■■□□□ 1.463e-10■■■■■ 27.7
CDK9-204ENST00000491521 RAD54L2Q9Y4B4 1467 aa24.18■■□□□ 1.46
CDK9-204ENST00000491521 CUX1P39880 1505 aa24.15■■□□□ 1.46
CDK9-204ENST00000491521 FGD5Q6ZNL6 1462 aa24.13■■□□□ 1.45
CDK9-204ENST00000491521 SOGA1O94964 1423 aa24.13■■□□□ 1.45
CDK9-204ENST00000491521 TDRD9Q8NDG6 1382 aaKnown RBP24.08■■□□□ 1.45
CDK9-204ENST00000491521 FBLN2P98095 1184 aa24.05■■□□□ 1.44
CDK9-204ENST00000491521 CHD1O14646 1710 aa24.04■■□□□ 1.44
CDK9-204ENST00000491521 RIMBP3CA6NJZ7 1639 aa23.95■■□□□ 1.42
CDK9-204ENST00000491521 RIMBP3BA6NNM3 1639 aa23.95■■□□□ 1.42
CDK9-204ENST00000491521 RIMBP3Q9UFD9 1639 aa23.95■■□□□ 1.42
CDK9-204ENST00000491521 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
CDK9-204ENST00000491521 WDR97A6NE52 1622 aa23.92■■□□□ 1.42
CDK9-204ENST00000491521 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
CDK9-204ENST00000491521 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
CDK9-204ENST00000491521 PBRM1Q86U86 1689 aa23.86■■□□□ 1.41
CDK9-204ENST00000491521 CHMP7Q8WUX9 453 aaPredicted RBP23.85■■□□□ 1.41
CDK9-204ENST00000491521 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
CDK9-204ENST00000491521 WRNQ14191 1432 aaPredicted RBP eCLIP23.84■■□□□ 1.41
CDK9-204ENST00000491521 SYNJ1O43426 1573 aa23.83■■□□□ 1.41
CDK9-204ENST00000491521 MAGI1Q96QZ7 1491 aaPredicted RBP23.83■■□□□ 1.41
CDK9-204ENST00000491521 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
CDK9-204ENST00000491521 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
CDK9-204ENST00000491521 BIVM-ERCC5R4GMW8 1640 aa23.81■■□□□ 1.4
CDK9-204ENST00000491521 ABCA5Q8WWZ7 1642 aa23.79■■□□□ 1.4
CDK9-204ENST00000491521 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
CDK9-204ENST00000491521 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
CDK9-204ENST00000491521 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
CDK9-204ENST00000491521 ARAP1Q96P48 1450 aa23.65■■□□□ 1.38
CDK9-204ENST00000491521 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
CDK9-204ENST00000491521 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
CDK9-204ENST00000491521 FHAD1B1AJZ9 1412 aa23.53■■□□□ 1.36
CDK9-204ENST00000491521 ERICH3Q5RHP9 1530 aa23.53■■□□□ 1.36
CDK9-204ENST00000491521 CEP170Q5SW79 1584 aa23.5■■□□□ 1.35
CDK9-204ENST00000491521 NUP160Q12769 1436 aa23.44■■□□□ 1.34
CDK9-204ENST00000491521 TRHP20396 242 aaPredicted RBP23.43■■□□□ 1.34
CDK9-204ENST00000491521 ERCC6L2Q5T890 1561 aa23.41■■□□□ 1.34
CDK9-204ENST00000491521 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
CDK9-204ENST00000491521 SHROOM2Q13796 1616 aa23.32■■□□□ 1.32
CDK9-204ENST00000491521 IGF1RP08069 1367 aa23.31■■□□□ 1.32
CDK9-204ENST00000491521 CUL7Q14999 1698 aa23.27■■□□□ 1.32
CDK9-204ENST00000491521 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms