RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
CD46-216ENST00000490278 IRX5P78411 483 aaPredicted RBP9.3□□□□□ -0.92
CD46-216ENST00000490278 ST18O60284 1047 aa9.29□□□□□ -0.92
CD46-216ENST00000490278 PDCD7Q8N8D1 485 aaKnown RBP9.29□□□□□ -0.92
CD46-216ENST00000490278 OCEL1Q9H607 264 aa9.29□□□□□ -0.92
CD46-216ENST00000490278 DPY19L2Q6NUT2 758 aa9.28□□□□□ -0.92
CD46-216ENST00000490278 SLAIN1Q8ND83 568 aa9.27□□□□□ -0.93
CD46-216ENST00000490278 PLCG2P16885 1265 aa9.26□□□□□ -0.93
CD46-216ENST00000490278 PDE4AP27815 886 aa9.26□□□□□ -0.93
CD46-216ENST00000490278 P3H3Q8IVL6 736 aa9.26□□□□□ -0.93
CD46-216ENST00000490278 NCKAP5LQ9HCH0 1330 aa9.25□□□□□ -0.93
CD46-216ENST00000490278 NBR1Q14596 966 aa9.24□□□□□ -0.93
CD46-216ENST00000490278 LARP6Q9BRS8 491 aaKnown RBP9.23□□□□□ -0.93
CD46-216ENST00000490278 CRISPLD2Q9H0B8 497 aa9.23□□□□□ -0.93
CD46-216ENST00000490278 MICALL2Q8IY33 904 aa9.22□□□□□ -0.93
CD46-216ENST00000490278 G3V3G9 751 aa9.21□□□□□ -0.94
CD46-216ENST00000490278 BOLA1Q9Y3E2 137 aa9.21□□□□□ -0.94
CD46-216ENST00000490278 MMRN1Q13201 1228 aa9.2□□□□□ -0.94
CD46-216ENST00000490278 MFSD10Q14728 455 aa9.2□□□□□ -0.94
CD46-216ENST00000490278 KCNV2Q8TDN2 545 aa9.2□□□□□ -0.94
CD46-216ENST00000490278 TMEM121BQ9BXQ6 578 aaPredicted RBP9.2□□□□□ -0.94
CD46-216ENST00000490278 E2F4Q16254 413 aa9.19□□□□□ -0.94
CD46-216ENST00000490278 SPNS2Q8IVW8 549 aa9.19□□□□□ -0.94
CD46-216ENST00000490278 DDX27Q96GQ7 796 aaKnown RBP9.19□□□□□ -0.94
CD46-216ENST00000490278 L3MBTL3Q96JM7 780 aaPredicted RBP9.19□□□□□ -0.94
CD46-216ENST00000490278 GPHNQ9NQX3 736 aaPredicted RBP9.17□□□□□ -0.94
CD46-216ENST00000490278 TMC2Q8TDI7 906 aa9.14□□□□□ -0.95
CD46-216ENST00000490278 ARHGEF1Q92888 912 aaKnown RBP9.14□□□□□ -0.95
CD46-216ENST00000490278 PPP1R15BQ5SWA1 713 aa9.13□□□□□ -0.95
CD46-216ENST00000490278 CAMK2BQ13554 666 aa9.11□□□□□ -0.95
CD46-216ENST00000490278 FOXK1P85037 733 aa9.1□□□□□ -0.95
CD46-216ENST00000490278 DSG2Q14126 1118 aa9.1□□□□□ -0.95
CD46-216ENST00000490278 C2orf72A6NCS6 295 aa9.09□□□□□ -0.95
CD46-216ENST00000490278 SNPHO15079 494 aa9.09□□□□□ -0.95
CD46-216ENST00000490278 KIF3CO14782 793 aa9.08□□□□□ -0.96
CD46-216ENST00000490278 MARVELD3Q96A59 401 aa9.07□□□□□ -0.96
CD46-216ENST00000490278 ARIH1Q9Y4X5 557 aaPredicted RBP9.07□□□□□ -0.96
CD46-216ENST00000490278 C3orf67Q6ZVT6 689 aa9.06□□□□□ -0.96
CD46-216ENST00000490278 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.06□□□□□ -0.96
CD46-216ENST00000490278 TMEM92Q6UXU6 159 aa9.05□□□□□ -0.96
CD46-216ENST00000490278 PLPP6Q8IY26 295 aa9.05□□□□□ -0.96
CD46-216ENST00000490278 TPRNQ4KMQ1 711 aa9.03□□□□□ -0.96
CD46-216ENST00000490278 EMILIN3Q9NT22 766 aa9.02□□□□□ -0.97
CD46-216ENST00000490278 PRKCSHP14314 528 aaPredicted RBP9.01□□□□□ -0.97
CD46-216ENST00000490278 TULP1O00294 542 aaPredicted RBP9□□□□□ -0.97
CD46-216ENST00000490278 SEMA3EO15041 775 aa9□□□□□ -0.97
CD46-216ENST00000490278 DPYSL4O14531 572 aa8.99□□□□□ -0.97
CD46-216ENST00000490278 TESPA1A2RU30 521 aaPredicted RBP8.98□□□□□ -0.97
CD46-216ENST00000490278 POTEB3A0JP26 581 aa8.97□□□□□ -0.97
CD46-216ENST00000490278 POTEBQ6S5H4 581 aa8.97□□□□□ -0.97
CD46-216ENST00000490278 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.97□□□□□ -0.97
CD46-216ENST00000490278 KRTAP3-3Q9BYR6 98 aa8.97□□□□□ -0.97
CD46-216ENST00000490278 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
CD46-216ENST00000490278 EMP3P54852 163 aa8.96□□□□□ -0.98
CD46-216ENST00000490278 SPDYE16A6NNV3 312 aaPredicted RBP8.95□□□□□ -0.98
CD46-216ENST00000490278 PDIA6Q15084 440 aa8.95□□□□□ -0.98
CD46-216ENST00000490278 SMYD5Q6GMV2 418 aa8.95□□□□□ -0.98
CD46-216ENST00000490278 LMOD2Q6P5Q4 547 aa8.95□□□□□ -0.98
CD46-216ENST00000490278 MAP3K9P80192 1104 aa8.94□□□□□ -0.98
CD46-216ENST00000490278 HS3ST6Q96QI5 342 aa8.94□□□□□ -0.98
CD46-216ENST00000490278 OXER1Q8TDS5 423 aa8.93□□□□□ -0.98
CD46-216ENST00000490278 UPF1Q92900 1129 aaKnown RBP eCLIP8.93□□□□□ -0.98
CD46-216ENST00000490278 FAM205CA6NFA0 338 aa8.91□□□□□ -0.98
CD46-216ENST00000490278 SLC34A2O95436 690 aa8.9□□□□□ -0.98
CD46-216ENST00000490278 PTCD2Q8WV60 388 aaKnown RBP8.9□□□□□ -0.98
CD46-216ENST00000490278 TBC1D12O60347 775 aa8.89□□□□□ -0.99
CD46-216ENST00000490278 MLLT3P42568 568 aaPredicted RBP8.89□□□□□ -0.99
CD46-216ENST00000490278 ZNF316A6NFI3 1004 aaPredicted RBP8.85□□□□□ -0.99
CD46-216ENST00000490278 EVI5O60447 810 aa8.85□□□□□ -0.99
CD46-216ENST00000490278 GRXCR2A6NFK2 248 aa8.83□□□□□ -1
CD46-216ENST00000490278 PTGER2P43116 358 aa8.83□□□□□ -1
CD46-216ENST00000490278 RBM26Q5T8P6 1007 aaKnown RBP8.83□□□□□ -1
CD46-216ENST00000490278 PCDHGA4Q9Y5G9 962 aa8.83□□□□□ -1
CD46-216ENST00000490278 ZC3H15Q8WU90 426 aaKnown RBP8.82□□□□□ -1
CD46-216ENST00000490278 DOK7Q18PE1 504 aa8.81□□□□□ -1
CD46-216ENST00000490278 ANO8Q9HCE9 1232 aaPredicted RBP8.81□□□□□ -1
CD46-216ENST00000490278 DDX12PQ92771 950 aa8.8□□□□□ -1
CD46-216ENST00000490278 HOXB3P14651 431 aaPredicted RBP8.79□□□□□ -1
CD46-216ENST00000490278 GPIHBP1Q8IV16 184 aa8.79□□□□□ -1
CD46-216ENST00000490278 RIMBP2O15034 1052 aa8.78□□□□□ -1
CD46-216ENST00000490278 OSBPP22059 807 aa8.77□□□□□ -1.01
CD46-216ENST00000490278 ZSWIM6Q9HCJ5 1215 aa8.77□□□□□ -1.01
CD46-216ENST00000490278 HOXB1P14653 301 aaPredicted RBP8.76□□□□□ -1.01
CD46-216ENST00000490278 KDM4FA0A1W2PPD8 638 aa8.75□□□□□ -1.01
CD46-216ENST00000490278 ZMYND10O75800 440 aa8.75□□□□□ -1.01
CD46-216ENST00000490278 ZNF710Q8N1W2 664 aa8.75□□□□□ -1.01
CD46-216ENST00000490278 PHF14O94880 888 aa8.74□□□□□ -1.01
CD46-216ENST00000490278 ARSIQ5FYB1 569 aa8.74□□□□□ -1.01
CD46-216ENST00000490278 NUTM2FA1L443 756 aa8.73□□□□□ -1.01
CD46-216ENST00000490278 EPAS1Q99814 870 aa8.73□□□□□ -1.01
CD46-216ENST00000490278 NUDT7P0C024 238 aa8.72□□□□□ -1.01
CD46-216ENST00000490278 GPR153Q6NV75 609 aa8.72□□□□□ -1.01
CD46-216ENST00000490278 BARGINQ6ZT62 677 aa8.72□□□□□ -1.01
CD46-216ENST00000490278 RNF166Q96A37 237 aaPredicted RBP8.72□□□□□ -1.01
CD46-216ENST00000490278 KHSRPQ92945 711 aaKnown RBP eCLIP8.71□□□□□ -1.022e-8■■■□□ 16.6
CD46-216ENST00000490278 JPH4Q96JJ6 628 aa8.71□□□□□ -1.02
CD46-216ENST00000490278 PCDHGA10Q9Y5H3 936 aa8.71□□□□□ -1.02
CD46-216ENST00000490278 ERBB3P21860 1342 aa8.71□□□□□ -1.02
CD46-216ENST00000490278 PRIM1P49642 420 aaKnown RBP8.7□□□□□ -1.02
CD46-216ENST00000490278 SLC24A3Q9HC58 644 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms