RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 POGZQ7Z3K3 1410 aa16.85■□□□□ 0.29
SCAMP4-208ENST00000489554 ARHGAP5Q13017 1502 aa16.85■□□□□ 0.29
SCAMP4-208ENST00000489554 MAGI2Q86UL8 1455 aa16.84■□□□□ 0.29
SCAMP4-208ENST00000489554 ARHGEF40Q8TER5 1519 aa16.84■□□□□ 0.29
SCAMP4-208ENST00000489554 ZFYVE16Q7Z3T8 1539 aa16.8■□□□□ 0.28
SCAMP4-208ENST00000489554 ARID4BQ4LE39 1312 aaPredicted RBP16.79■□□□□ 0.28
SCAMP4-208ENST00000489554 PREX2Q70Z35 1606 aa16.79■□□□□ 0.28
SCAMP4-208ENST00000489554 ZNF518AQ6AHZ1 1483 aa16.79■□□□□ 0.28
SCAMP4-208ENST00000489554 YEATS2Q9ULM3 1422 aa16.78■□□□□ 0.28
SCAMP4-208ENST00000489554 MTUS2Q5JR59 1369 aa16.77■□□□□ 0.28
SCAMP4-208ENST00000489554 CDC42BPBQ9Y5S2 1711 aa16.77■□□□□ 0.28
SCAMP4-208ENST00000489554 ADAMTSL3P82987 1691 aa16.75■□□□□ 0.27
SCAMP4-208ENST00000489554 BCORL1Q5H9F3 1711 aa16.74■□□□□ 0.27
SCAMP4-208ENST00000489554 KDM5CP41229 1560 aa16.74■□□□□ 0.27
SCAMP4-208ENST00000489554 ABCC1P33527 1531 aa16.74■□□□□ 0.27
SCAMP4-208ENST00000489554 AFAP1Q8N556 730 aa16.73■□□□□ 0.27
SCAMP4-208ENST00000489554 GPATCH8Q9UKJ3 1502 aaKnown RBP16.73■□□□□ 0.27
SCAMP4-208ENST00000489554 CDC42BPAQ5VT25 1732 aa16.73■□□□□ 0.27
SCAMP4-208ENST00000489554 ATP10AO60312 1499 aa16.73■□□□□ 0.27
SCAMP4-208ENST00000489554 EHBP1L1Q8N3D4 1523 aa16.72■□□□□ 0.27
SCAMP4-208ENST00000489554 CCNB3Q8WWL7 1395 aa16.72■□□□□ 0.27
SCAMP4-208ENST00000489554 C9orf84Q5VXU9 1444 aa16.71■□□□□ 0.27
SCAMP4-208ENST00000489554 VPS8Q8N3P4 1428 aa16.7■□□□□ 0.26
SCAMP4-208ENST00000489554 HECW2Q9P2P5 1572 aa16.7■□□□□ 0.26
SCAMP4-208ENST00000489554 PTPRMP28827 1452 aa16.7■□□□□ 0.26
SCAMP4-208ENST00000489554 ARHGEF12Q9NZN5 1544 aa16.7■□□□□ 0.26
SCAMP4-208ENST00000489554 TRAPPC8Q9Y2L5 1435 aa16.7■□□□□ 0.26
SCAMP4-208ENST00000489554 MLH3Q9UHC1 1453 aa16.69■□□□□ 0.26
SCAMP4-208ENST00000489554 CFDP1Q9UEE9 299 aaPredicted RBP16.69■□□□□ 0.26
SCAMP4-208ENST00000489554 MYT1LQ9UL68 1186 aa16.69■□□□□ 0.26
SCAMP4-208ENST00000489554 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
SCAMP4-208ENST00000489554 ITSN2Q9NZM3 1697 aa16.69■□□□□ 0.26
SCAMP4-208ENST00000489554 MADDQ8WXG6 1647 aa16.68■□□□□ 0.26
SCAMP4-208ENST00000489554 PLEKHH2Q8IVE3 1493 aa16.67■□□□□ 0.26
SCAMP4-208ENST00000489554 KIAA1107Q9UPP5 1409 aa16.67■□□□□ 0.26
SCAMP4-208ENST00000489554 SAMD9LQ8IVG5 1584 aa16.67■□□□□ 0.26
SCAMP4-208ENST00000489554 SIGLEC1Q9BZZ2 1709 aa16.65■□□□□ 0.26
SCAMP4-208ENST00000489554 SYCP2Q9BX26 1530 aa16.65■□□□□ 0.26
SCAMP4-208ENST00000489554 TIAM1Q13009 1591 aa16.64■□□□□ 0.25
SCAMP4-208ENST00000489554 DIP2CQ9Y2E4 1556 aa16.64■□□□□ 0.25
SCAMP4-208ENST00000489554 REREQ9P2R6 1566 aa16.64■□□□□ 0.25
SCAMP4-208ENST00000489554 MLECQ14165 292 aa16.63■□□□□ 0.25
SCAMP4-208ENST00000489554 HNRNPMP52272 730 aaKnown RBP eCLIP16.62■□□□□ 0.252e-12■■□□□ 14.5
SCAMP4-208ENST00000489554 ABCA6Q8N139 1617 aa16.62■□□□□ 0.25
SCAMP4-208ENST00000489554 RIMS1Q86UR5 1692 aaKnown RBP16.62■□□□□ 0.25
SCAMP4-208ENST00000489554 NCOA2Q15596 1464 aa16.61■□□□□ 0.25
SCAMP4-208ENST00000489554 SPAG9O60271 1321 aaKnown RBP16.61■□□□□ 0.25
SCAMP4-208ENST00000489554 SUPT6HQ7KZ85 1726 aaKnown RBP16.61■□□□□ 0.25
SCAMP4-208ENST00000489554 MAP3K1Q13233 1512 aa16.6■□□□□ 0.25
SCAMP4-208ENST00000489554 LRRC9Q6ZRR7 1453 aa16.59■□□□□ 0.25
SCAMP4-208ENST00000489554 AGLP35573 1532 aa16.59■□□□□ 0.25
SCAMP4-208ENST00000489554 KIDINS220Q9ULH0 1771 aa16.59■□□□□ 0.25
SCAMP4-208ENST00000489554 FER1L4A9Z1Z3 1794 aa16.56■□□□□ 0.24
SCAMP4-208ENST00000489554 ATP7AQ04656 1500 aa16.56■□□□□ 0.24
SCAMP4-208ENST00000489554 ZNF644Q9H582 1327 aaPredicted RBP16.56■□□□□ 0.24
SCAMP4-208ENST00000489554 MBD5Q9P267 1494 aa16.55■□□□□ 0.24
SCAMP4-208ENST00000489554 INO80Q9ULG1 1556 aaPredicted RBP16.54■□□□□ 0.24
SCAMP4-208ENST00000489554 APLP2Q06481 763 aa16.52■□□□□ 0.24
SCAMP4-208ENST00000489554 KANK4Q5T7N3 995 aaPredicted RBP16.52■□□□□ 0.24
SCAMP4-208ENST00000489554 RSPH4AQ5TD94 716 aa16.52■□□□□ 0.24
SCAMP4-208ENST00000489554 PLPPR3Q6T4P5 718 aa16.52■□□□□ 0.24
SCAMP4-208ENST00000489554 CAMSAP2Q08AD1 1489 aa16.52■□□□□ 0.23
SCAMP4-208ENST00000489554 RTEL1-TNFRSF6BF6WH68 1400 aa16.52■□□□□ 0.23
SCAMP4-208ENST00000489554 LMTK3Q96Q04 1460 aa16.51■□□□□ 0.23
SCAMP4-208ENST00000489554 ESF1Q9H501 851 aaKnown RBP16.51■□□□□ 0.23
SCAMP4-208ENST00000489554 A2MP01023 1474 aa16.5■□□□□ 0.23
SCAMP4-208ENST00000489554 CCDC141Q6ZP82 1450 aa16.5■□□□□ 0.23
SCAMP4-208ENST00000489554 PLXNC1O60486 1568 aa16.48■□□□□ 0.23
SCAMP4-208ENST00000489554 CNTLNQ9NXG0 1405 aa16.48■□□□□ 0.23
SCAMP4-208ENST00000489554 MIA2Q96PC5 1412 aa16.47■□□□□ 0.23
SCAMP4-208ENST00000489554 ARHGEF5Q12774 1597 aa16.47■□□□□ 0.23
SCAMP4-208ENST00000489554 MYOM3Q5VTT5 1437 aa16.46■□□□□ 0.23
SCAMP4-208ENST00000489554 CEBPAP49715 358 aaPredicted RBP16.46■□□□□ 0.23
SCAMP4-208ENST00000489554 ADGBQ8N7X0 1667 aa16.46■□□□□ 0.23
SCAMP4-208ENST00000489554 TSPY4P0CV99 314 aa16.44■□□□□ 0.22
SCAMP4-208ENST00000489554 TSPY10P0CW01 314 aa16.44■□□□□ 0.22
SCAMP4-208ENST00000489554 DHX29Q7Z478 1369 aaKnown RBP16.43■□□□□ 0.22
SCAMP4-208ENST00000489554 PPP6R1Q9UPN7 881 aa16.42■□□□□ 0.22
SCAMP4-208ENST00000489554 C3P01024 1663 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 PREX1Q8TCU6 1659 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 HSPA2P54652 639 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 GGT6Q6P531 493 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 MROH2AA6NES4 1674 aa16.4■□□□□ 0.22
SCAMP4-208ENST00000489554 ZMYM3Q14202 1370 aa16.38■□□□□ 0.21
SCAMP4-208ENST00000489554 MAST1Q9Y2H9 1570 aa16.38■□□□□ 0.21
SCAMP4-208ENST00000489554 NPATQ14207 1427 aa16.37■□□□□ 0.21
SCAMP4-208ENST00000489554 SETD1BQ9UPS6 1966 aaKnown RBP16.37■□□□□ 0.21
SCAMP4-208ENST00000489554 KIF3BO15066 747 aa16.35■□□□□ 0.21
SCAMP4-208ENST00000489554 CLTCQ00610 1675 aaKnown RBP16.34■□□□□ 0.21
SCAMP4-208ENST00000489554 FGD6Q6ZV73 1430 aa16.34■□□□□ 0.21
SCAMP4-208ENST00000489554 FAM135AQ9P2D6 1515 aa16.34■□□□□ 0.21
SCAMP4-208ENST00000489554 PTPN23Q9H3S7 1636 aa16.34■□□□□ 0.21
SCAMP4-208ENST00000489554 TCOF1Q13428 1488 aaKnown RBP16.32■□□□□ 0.2
SCAMP4-208ENST00000489554 SHANK2Q9UPX8 1470 aa16.32■□□□□ 0.2
SCAMP4-208ENST00000489554 ABCC5O15440 1437 aa16.3■□□□□ 0.2
SCAMP4-208ENST00000489554 PTPRKQ15262 1439 aa16.3■□□□□ 0.2
SCAMP4-208ENST00000489554 KDM5DQ9BY66 1539 aa16.29■□□□□ 0.2
SCAMP4-208ENST00000489554 DAPK1P53355 1430 aa16.28■□□□□ 0.2
SCAMP4-208ENST00000489554 WASHC2CQ9Y4E1 1318 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms