RNA–Protein interactions for RNA: ENST00000488087.1

ECHDC1-217, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 3

Gene ECHDC1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-217ENST00000488087 SPNS2Q8IVW8 549 aa9.36□□□□□ -0.91
ECHDC1-217ENST00000488087 PLCG2P16885 1265 aa9.35□□□□□ -0.91
ECHDC1-217ENST00000488087 TMEM121BQ9BXQ6 578 aaPredicted RBP9.35□□□□□ -0.91
ECHDC1-217ENST00000488087 SNPHO15079 494 aa9.33□□□□□ -0.92
ECHDC1-217ENST00000488087 IRX5P78411 483 aaPredicted RBP9.33□□□□□ -0.92
ECHDC1-217ENST00000488087 ILDR1Q86SU0 546 aaPredicted RBP9.33□□□□□ -0.92
ECHDC1-217ENST00000488087 OCEL1Q9H607 264 aa9.33□□□□□ -0.92
ECHDC1-217ENST00000488087 DPY19L2Q6NUT2 758 aa9.32□□□□□ -0.92
ECHDC1-217ENST00000488087 CADPS2Q86UW7 1296 aa9.32□□□□□ -0.92
ECHDC1-217ENST00000488087 G3V3G9 751 aa9.31□□□□□ -0.92
ECHDC1-217ENST00000488087 PDCD7Q8N8D1 485 aaKnown RBP9.31□□□□□ -0.92
ECHDC1-217ENST00000488087 WDR70Q9NW82 654 aa9.29□□□□□ -0.92
ECHDC1-217ENST00000488087 MICALL2Q8IY33 904 aa9.25□□□□□ -0.93
ECHDC1-217ENST00000488087 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.25□□□□□ -0.93
ECHDC1-217ENST00000488087 BOLA1Q9Y3E2 137 aa9.25□□□□□ -0.93
ECHDC1-217ENST00000488087 L3MBTL3Q96JM7 780 aaPredicted RBP9.24□□□□□ -0.93
ECHDC1-217ENST00000488087 PDE4AP27815 886 aa9.23□□□□□ -0.93
ECHDC1-217ENST00000488087 MARVELD3Q96A59 401 aa9.23□□□□□ -0.93
ECHDC1-217ENST00000488087 LARP6Q9BRS8 491 aaKnown RBP9.22□□□□□ -0.93
ECHDC1-217ENST00000488087 BCANQ96GW7 911 aa9.21□□□□□ -0.94
ECHDC1-217ENST00000488087 NCKAP5LQ9HCH0 1330 aa9.21□□□□□ -0.94
ECHDC1-217ENST00000488087 CRISPLD2Q9H0B8 497 aa9.19□□□□□ -0.94
ECHDC1-217ENST00000488087 P3H3Q8IVL6 736 aa9.18□□□□□ -0.94
ECHDC1-217ENST00000488087 TMC2Q8TDI7 906 aa9.18□□□□□ -0.94
ECHDC1-217ENST00000488087 DDX27Q96GQ7 796 aaKnown RBP9.18□□□□□ -0.94
ECHDC1-217ENST00000488087 EMP3P54852 163 aa9.16□□□□□ -0.94
ECHDC1-217ENST00000488087 NBR1Q14596 966 aa9.16□□□□□ -0.94
ECHDC1-217ENST00000488087 C3orf67Q6ZVT6 689 aa9.16□□□□□ -0.94
ECHDC1-217ENST00000488087 GPHNQ9NQX3 736 aaPredicted RBP9.15□□□□□ -0.94
ECHDC1-217ENST00000488087 MFSD10Q14728 455 aa9.14□□□□□ -0.95
ECHDC1-217ENST00000488087 E2F4Q16254 413 aa9.14□□□□□ -0.95
ECHDC1-217ENST00000488087 KCNV2Q8TDN2 545 aa9.13□□□□□ -0.95
ECHDC1-217ENST00000488087 PPP1R15BQ5SWA1 713 aa9.12□□□□□ -0.95
ECHDC1-217ENST00000488087 C2orf72A6NCS6 295 aa9.11□□□□□ -0.95
ECHDC1-217ENST00000488087 DSG2Q14126 1118 aa9.1□□□□□ -0.95
ECHDC1-217ENST00000488087 HS3ST6Q96QI5 342 aa9.1□□□□□ -0.95
ECHDC1-217ENST00000488087 FAM205CA6NFA0 338 aa9.09□□□□□ -0.95
ECHDC1-217ENST00000488087 FOXK1P85037 733 aa9.08□□□□□ -0.96
ECHDC1-217ENST00000488087 KIF3CO14782 793 aa9.07□□□□□ -0.96
ECHDC1-217ENST00000488087 TMEM92Q6UXU6 159 aa9.07□□□□□ -0.96
ECHDC1-217ENST00000488087 PLPP6Q8IY26 295 aa9.07□□□□□ -0.96
ECHDC1-217ENST00000488087 KRTAP3-3Q9BYR6 98 aa9.07□□□□□ -0.96
ECHDC1-217ENST00000488087 KRTAP3-2Q9BYR7 98 aa9.07□□□□□ -0.96
ECHDC1-217ENST00000488087 ARHGEF1Q92888 912 aaKnown RBP9.05□□□□□ -0.96
ECHDC1-217ENST00000488087 CAMK2BQ13554 666 aa9.03□□□□□ -0.96
ECHDC1-217ENST00000488087 POTEB3A0JP26 581 aa9.02□□□□□ -0.97
ECHDC1-217ENST00000488087 POTEBQ6S5H4 581 aa9.02□□□□□ -0.97
ECHDC1-217ENST00000488087 EMILIN3Q9NT22 766 aa8.99□□□□□ -0.97
ECHDC1-217ENST00000488087 DPYSL4O14531 572 aa8.98□□□□□ -0.97
ECHDC1-217ENST00000488087 UPF1Q92900 1129 aaKnown RBP eCLIP8.98□□□□□ -0.97
ECHDC1-217ENST00000488087 ARIH1Q9Y4X5 557 aaPredicted RBP8.97□□□□□ -0.97
ECHDC1-217ENST00000488087 MAP3K9P80192 1104 aa8.96□□□□□ -0.98
ECHDC1-217ENST00000488087 TULP1O00294 542 aaPredicted RBP8.95□□□□□ -0.98
ECHDC1-217ENST00000488087 SEMA3EO15041 775 aa8.95□□□□□ -0.98
ECHDC1-217ENST00000488087 RNF166Q96A37 237 aaPredicted RBP8.93□□□□□ -0.98
ECHDC1-217ENST00000488087 OXER1Q8TDS5 423 aa8.92□□□□□ -0.98
ECHDC1-217ENST00000488087 SPDYE16A6NNV3 312 aaPredicted RBP8.91□□□□□ -0.98
ECHDC1-217ENST00000488087 TBC1D12O60347 775 aa8.91□□□□□ -0.98
ECHDC1-217ENST00000488087 PDIA6Q15084 440 aa8.91□□□□□ -0.98
ECHDC1-217ENST00000488087 ZNF710Q8N1W2 664 aa8.91□□□□□ -0.98
ECHDC1-217ENST00000488087 ERBB3P21860 1342 aa8.9□□□□□ -0.98
ECHDC1-217ENST00000488087 TESPA1A2RU30 521 aaPredicted RBP8.9□□□□□ -0.98
ECHDC1-217ENST00000488087 ZNF316A6NFI3 1004 aaPredicted RBP8.89□□□□□ -0.99
ECHDC1-217ENST00000488087 SLC34A2O95436 690 aa8.89□□□□□ -0.99
ECHDC1-217ENST00000488087 SMYD5Q6GMV2 418 aa8.89□□□□□ -0.99
ECHDC1-217ENST00000488087 PTCD2Q8WV60 388 aaKnown RBP8.89□□□□□ -0.99
ECHDC1-217ENST00000488087 HOXB1P14653 301 aaPredicted RBP8.88□□□□□ -0.99
ECHDC1-217ENST00000488087 DOK7Q18PE1 504 aa8.88□□□□□ -0.99
ECHDC1-217ENST00000488087 RIMBP2O15034 1052 aa8.87□□□□□ -0.99
ECHDC1-217ENST00000488087 TPRNQ4KMQ1 711 aa8.87□□□□□ -0.99
ECHDC1-217ENST00000488087 EVI5O60447 810 aa8.86□□□□□ -0.99
ECHDC1-217ENST00000488087 HOXB3P14651 431 aaPredicted RBP8.86□□□□□ -0.99
ECHDC1-217ENST00000488087 LMOD2Q6P5Q4 547 aa8.86□□□□□ -0.99
ECHDC1-217ENST00000488087 MYT1LQ9UL68 1186 aa8.86□□□□□ -0.99
ECHDC1-217ENST00000488087 MLLT3P42568 568 aaPredicted RBP8.85□□□□□ -0.99
ECHDC1-217ENST00000488087 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.85□□□□□ -0.99
ECHDC1-217ENST00000488087 PCDHGA4Q9Y5G9 962 aa8.85□□□□□ -0.99
ECHDC1-217ENST00000488087 GRXCR2A6NFK2 248 aa8.84□□□□□ -0.99
ECHDC1-217ENST00000488087 PRKCSHP14314 528 aaPredicted RBP8.83□□□□□ -1
ECHDC1-217ENST00000488087 DDX12PQ92771 950 aa8.82□□□□□ -1
ECHDC1-217ENST00000488087 ARSIQ5FYB1 569 aa8.8□□□□□ -1
ECHDC1-217ENST00000488087 VARS2Q5ST30 1063 aaKnown RBP8.8□□□□□ -1
ECHDC1-217ENST00000488087 PTGER2P43116 358 aa8.79□□□□□ -1
ECHDC1-217ENST00000488087 ZSWIM6Q9HCJ5 1215 aa8.79□□□□□ -1
ECHDC1-217ENST00000488087 NUDT7P0C024 238 aa8.78□□□□□ -1
ECHDC1-217ENST00000488087 KHSRPQ92945 711 aaKnown RBP eCLIP8.78□□□□□ -1
ECHDC1-217ENST00000488087 RBM26Q5T8P6 1007 aaKnown RBP8.77□□□□□ -1.01
ECHDC1-217ENST00000488087 ANO8Q9HCE9 1232 aaPredicted RBP8.77□□□□□ -1.01
ECHDC1-217ENST00000488087 ZNF687Q8N1G0 1237 aa8.76□□□□□ -1.01
ECHDC1-217ENST00000488087 GPR153Q6NV75 609 aa8.75□□□□□ -1.01
ECHDC1-217ENST00000488087 GPIHBP1Q8IV16 184 aa8.74□□□□□ -1.01
ECHDC1-217ENST00000488087 OSBPP22059 807 aa8.73□□□□□ -1.01
ECHDC1-217ENST00000488087 KDM4FA0A1W2PPD8 638 aa8.72□□□□□ -1.01
ECHDC1-217ENST00000488087 NUTM2FA1L443 756 aa8.72□□□□□ -1.01
ECHDC1-217ENST00000488087 PHF14O94880 888 aa8.72□□□□□ -1.01
ECHDC1-217ENST00000488087 ZC3H15Q8WU90 426 aaKnown RBP8.72□□□□□ -1.01
ECHDC1-217ENST00000488087 EPAS1Q99814 870 aa8.72□□□□□ -1.01
ECHDC1-217ENST00000488087 ZNF454Q8N9F8 522 aa8.71□□□□□ -1.02
ECHDC1-217ENST00000488087 RBM33Q96EV2 1170 aaKnown RBP8.71□□□□□ -1.02
ECHDC1-217ENST00000488087 JPH4Q96JJ6 628 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms