RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 POTEMA6NI47 508 aa14.25□□□□□ -0.13
LTN1-206ENST00000486427 SLAIN1Q8ND83 568 aa14.24□□□□□ -0.13
LTN1-206ENST00000486427 CADPS2Q86UW7 1296 aa14.23□□□□□ -0.13
LTN1-206ENST00000486427 POTEGQ6S5H5 508 aa14.18□□□□□ -0.14
LTN1-206ENST00000486427 TSHZ2Q9NRE2 1034 aa14.17□□□□□ -0.14
LTN1-206ENST00000486427 KIF3CO14782 793 aa14.16□□□□□ -0.14
LTN1-206ENST00000486427 C2orf72A6NCS6 295 aa14.15□□□□□ -0.14
LTN1-206ENST00000486427 NCKAP5LQ9HCH0 1330 aa14.15□□□□□ -0.15
LTN1-206ENST00000486427 CRISPLD2Q9H0B8 497 aa14.13□□□□□ -0.15
LTN1-206ENST00000486427 TMC2Q8TDI7 906 aa14.12□□□□□ -0.15
LTN1-206ENST00000486427 GPHNQ9NQX3 736 aaPredicted RBP14.1□□□□□ -0.15
LTN1-206ENST00000486427 PCDH10Q9P2E7 1040 aa14.08□□□□□ -0.16
LTN1-206ENST00000486427 PDE4AP27815 886 aa14.06□□□□□ -0.16
LTN1-206ENST00000486427 HAP1P54257 671 aaPredicted RBP14.06□□□□□ -0.16
LTN1-206ENST00000486427 DSG2Q14126 1118 aa14.04□□□□□ -0.16
LTN1-206ENST00000486427 LARP6Q9BRS8 491 aaKnown RBP14.04□□□□□ -0.16
LTN1-206ENST00000486427 FOXK1P85037 733 aa14.02□□□□□ -0.17
LTN1-206ENST00000486427 MFSD10Q14728 455 aa14.01□□□□□ -0.17
LTN1-206ENST00000486427 HOXB3P14651 431 aaPredicted RBP14□□□□□ -0.17
LTN1-206ENST00000486427 PPP1R15BQ5SWA1 713 aa13.99□□□□□ -0.17
LTN1-206ENST00000486427 PLPP6Q8IY26 295 aa13.99□□□□□ -0.17
LTN1-206ENST00000486427 DDX27Q96GQ7 796 aaKnown RBP13.98□□□□□ -0.17
LTN1-206ENST00000486427 SNPHO15079 494 aa13.94□□□□□ -0.18
LTN1-206ENST00000486427 LCE2DQ5TA82 110 aaPredicted RBP13.94□□□□□ -0.18
LTN1-206ENST00000486427 DOK7Q18PE1 504 aa13.91□□□□□ -0.18
LTN1-206ENST00000486427 FAM163AQ96GL9 167 aaPredicted RBP13.91□□□□□ -0.18
LTN1-206ENST00000486427 KDM2AQ9Y2K7 1162 aa13.89□□□□□ -0.19
LTN1-206ENST00000486427 ST18O60284 1047 aa13.87□□□□□ -0.19
LTN1-206ENST00000486427 SLC34A2O95436 690 aa13.86□□□□□ -0.19
LTN1-206ENST00000486427 WDR70Q9NW82 654 aa13.86□□□□□ -0.19
LTN1-206ENST00000486427 ZNF710Q8N1W2 664 aa13.85□□□□□ -0.19
LTN1-206ENST00000486427 EMILIN3Q9NT22 766 aa13.84□□□□□ -0.19
LTN1-206ENST00000486427 CAMK2BQ13554 666 aa13.83□□□□□ -0.2
LTN1-206ENST00000486427 GPR153Q6NV75 609 aa13.82□□□□□ -0.2
LTN1-206ENST00000486427 PTCD2Q8WV60 388 aaKnown RBP13.82□□□□□ -0.2
LTN1-206ENST00000486427 UPF1Q92900 1129 aaKnown RBP eCLIP13.82□□□□□ -0.2
LTN1-206ENST00000486427 RIMBP2O15034 1052 aa13.81□□□□□ -0.2
LTN1-206ENST00000486427 ARSIQ5FYB1 569 aa13.81□□□□□ -0.2
LTN1-206ENST00000486427 OXER1Q8TDS5 423 aa13.81□□□□□ -0.2
LTN1-206ENST00000486427 KHSRPQ92945 711 aaKnown RBP eCLIP13.81□□□□□ -0.2
LTN1-206ENST00000486427 PCDHGA4Q9Y5G9 962 aa13.81□□□□□ -0.2
LTN1-206ENST00000486427 VSIG10Q8N0Z9 540 aa13.8□□□□□ -0.2
LTN1-206ENST00000486427 ZSWIM6Q9HCJ5 1215 aa13.8□□□□□ -0.2
LTN1-206ENST00000486427 E2F4Q16254 413 aa13.79□□□□□ -0.2
LTN1-206ENST00000486427 HOXB1P14653 301 aaPredicted RBP13.78□□□□□ -0.2
LTN1-206ENST00000486427 MARVELD3Q96A59 401 aa13.75□□□□□ -0.21
LTN1-206ENST00000486427 NUDT7P0C024 238 aa13.72□□□□□ -0.21
LTN1-206ENST00000486427 KCNV2Q8TDN2 545 aa13.72□□□□□ -0.21
LTN1-206ENST00000486427 KDM4FA0A1W2PPD8 638 aa13.71□□□□□ -0.21
LTN1-206ENST00000486427 DPYSL4O14531 572 aa13.71□□□□□ -0.21
LTN1-206ENST00000486427 TBC1D12O60347 775 aa13.71□□□□□ -0.21
LTN1-206ENST00000486427 MAP3K9P80192 1104 aa13.69□□□□□ -0.22
LTN1-206ENST00000486427 SLC24A1O60721 1099 aa13.68□□□□□ -0.22
LTN1-206ENST00000486427 EMP3P54852 163 aa13.67□□□□□ -0.22
LTN1-206ENST00000486427 ARIH1Q9Y4X5 557 aaPredicted RBP13.66□□□□□ -0.22
LTN1-206ENST00000486427 EVI5O60447 810 aa13.65□□□□□ -0.22
LTN1-206ENST00000486427 LHX6Q9UPM6 363 aa13.63□□□□□ -0.23
LTN1-206ENST00000486427 POTEB3A0JP26 581 aa13.61□□□□□ -0.23
LTN1-206ENST00000486427 FAM205CA6NFA0 338 aa13.61□□□□□ -0.23
LTN1-206ENST00000486427 ZNF316A6NFI3 1004 aaPredicted RBP13.61□□□□□ -0.23
LTN1-206ENST00000486427 POTEBQ6S5H4 581 aa13.61□□□□□ -0.23
LTN1-206ENST00000486427 P3H3Q8IVL6 736 aa13.61□□□□□ -0.23
LTN1-206ENST00000486427 ARHGEF1Q92888 912 aaKnown RBP13.6□□□□□ -0.23
LTN1-206ENST00000486427 ANO8Q9HCE9 1232 aaPredicted RBP13.6□□□□□ -0.23
LTN1-206ENST00000486427 PDIA6Q15084 440 aa13.59□□□□□ -0.23
LTN1-206ENST00000486427 ERBB3P21860 1342 aa13.59□□□□□ -0.23
LTN1-206ENST00000486427 CDAN1Q8IWY9 1227 aa13.58□□□□□ -0.24
LTN1-206ENST00000486427 VARS2Q5ST30 1063 aaKnown RBP13.57□□□□□ -0.24
LTN1-206ENST00000486427 HS3ST6Q96QI5 342 aa13.57□□□□□ -0.24
LTN1-206ENST00000486427 SPDYE16A6NNV3 312 aaPredicted RBP13.54□□□□□ -0.24
LTN1-206ENST00000486427 FOSBP53539 338 aa13.49□□□□□ -0.25
LTN1-206ENST00000486427 ZNF454Q8N9F8 522 aa13.49□□□□□ -0.25
LTN1-206ENST00000486427 PTGER2P43116 358 aa13.48□□□□□ -0.25
LTN1-206ENST00000486427 DDX12PQ92771 950 aa13.48□□□□□ -0.25
LTN1-206ENST00000486427 JPH4Q96JJ6 628 aa13.47□□□□□ -0.25
LTN1-206ENST00000486427 PCDHGA10Q9Y5H3 936 aa13.47□□□□□ -0.25
LTN1-206ENST00000486427 PSDA5PKW4 1024 aaPredicted RBP13.46□□□□□ -0.25
LTN1-206ENST00000486427 SEMA3EO15041 775 aa13.45□□□□□ -0.26
LTN1-206ENST00000486427 MLLT3P42568 568 aaPredicted RBP13.44□□□□□ -0.26
LTN1-206ENST00000486427 PPP4R3BQ5MIZ7 849 aa13.44□□□□□ -0.26
LTN1-206ENST00000486427 ZNF687Q8N1G0 1237 aa13.44□□□□□ -0.26
LTN1-206ENST00000486427 PHF14O94880 888 aa13.43□□□□□ -0.26
LTN1-206ENST00000486427 GRXCR2A6NFK2 248 aa13.42□□□□□ -0.26
LTN1-206ENST00000486427 POTEEQ6S8J3 1075 aa13.41□□□□□ -0.26
LTN1-206ENST00000486427 ZDHHC16Q969W1 377 aa13.4□□□□□ -0.26
LTN1-206ENST00000486427 ADAM33Q9BZ11 813 aa13.4□□□□□ -0.26
LTN1-206ENST00000486427 PRIM1P49642 420 aaKnown RBP13.39□□□□□ -0.27
LTN1-206ENST00000486427 NBR1Q14596 966 aa13.39□□□□□ -0.27
LTN1-206ENST00000486427 TYW1BQ6NUM6 668 aa13.39□□□□□ -0.27
LTN1-206ENST00000486427 EPAS1Q99814 870 aa13.38□□□□□ -0.27
LTN1-206ENST00000486427 TESPA1A2RU30 521 aaPredicted RBP13.37□□□□□ -0.27
LTN1-206ENST00000486427 OSBPP22059 807 aa13.37□□□□□ -0.27
LTN1-206ENST00000486427 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
LTN1-206ENST00000486427 KRTAP3-3Q9BYR6 98 aa13.36□□□□□ -0.27
LTN1-206ENST00000486427 KRTAP3-2Q9BYR7 98 aa13.36□□□□□ -0.27
LTN1-206ENST00000486427 FBXW7Q969H0 707 aa13.35□□□□□ -0.27
LTN1-206ENST00000486427 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
LTN1-206ENST00000486427 RBM33Q96EV2 1170 aaKnown RBP13.34□□□□□ -0.27
LTN1-206ENST00000486427 PSEN2P49810 448 aa13.32□□□□□ -0.28
LTN1-206ENST00000486427 EN1Q05925 392 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms