RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PHF8Q9UPP1 1060 aa10.19□□□□□ -0.78
VPS50-216ENST00000484954 PKD2Q13563 968 aa10.17□□□□□ -0.78
VPS50-216ENST00000484954 RNF25Q96BH1 459 aaPredicted RBP10.17□□□□□ -0.78
VPS50-216ENST00000484954 SOX12O15370 315 aa10.16□□□□□ -0.78
VPS50-216ENST00000484954 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.15□□□□□ -0.78
VPS50-216ENST00000484954 PTGER2P43116 358 aa10.15□□□□□ -0.78
VPS50-216ENST00000484954 TRIM41Q8WV44 630 aa10.15□□□□□ -0.78
VPS50-216ENST00000484954 ZFP91Q96JP5 570 aaPredicted RBP10.15□□□□□ -0.78
VPS50-216ENST00000484954 ZNF316A6NFI3 1004 aaPredicted RBP10.13□□□□□ -0.79
VPS50-216ENST00000484954 RIOK3O14730 519 aaKnown RBP10.11□□□□□ -0.79
VPS50-216ENST00000484954 LSM11P83369 360 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS50-216ENST00000484954 ECM2O94769 699 aaPredicted RBP10.08□□□□□ -0.8
VPS50-216ENST00000484954 VGFO15240 615 aaPredicted RBP10.07□□□□□ -0.8
VPS50-216ENST00000484954 PLA2G2EQ9NZK7 142 aa10.06□□□□□ -0.8
VPS50-216ENST00000484954 RGL2O15211 777 aa10.05□□□□□ -0.8
VPS50-216ENST00000484954 NUDT7P0C024 238 aa10.05□□□□□ -0.8
VPS50-216ENST00000484954 AXIN2Q9Y2T1 843 aa10.05□□□□□ -0.8
VPS50-216ENST00000484954 NLRP6P59044 892 aa10.03□□□□□ -0.8
VPS50-216ENST00000484954 POTEEQ6S8J3 1075 aa10.01□□□□□ -0.81
VPS50-216ENST00000484954 C2orf72A6NCS6 295 aa10□□□□□ -0.81
VPS50-216ENST00000484954 FBXO22Q8NEZ5 403 aa10□□□□□ -0.81
VPS50-216ENST00000484954 LHX6Q9UPM6 363 aa10□□□□□ -0.81
VPS50-216ENST00000484954 BCL11BQ9C0K0 894 aaPredicted RBP9.99□□□□□ -0.81
VPS50-216ENST00000484954 PBX2P40425 430 aa9.97□□□□□ -0.81
VPS50-216ENST00000484954 STK24Q9Y6E0 443 aa9.97□□□□□ -0.81
VPS50-216ENST00000484954 PCDHGA4Q9Y5G9 962 aa9.96□□□□□ -0.82
VPS50-216ENST00000484954 KIF3CO14782 793 aa9.95□□□□□ -0.82
VPS50-216ENST00000484954 MFRPQ9BY79 579 aa9.95□□□□□ -0.82
VPS50-216ENST00000484954 HCSTQ9UBK5 93 aa9.94□□□□□ -0.82
VPS50-216ENST00000484954 ADGRD1Q6QNK2 874 aa9.9□□□□□ -0.82
VPS50-216ENST00000484954 STK25O00506 426 aa9.88□□□□□ -0.83
VPS50-216ENST00000484954 TMC2Q8TDI7 906 aa9.88□□□□□ -0.83
VPS50-216ENST00000484954 SLC34A2O95436 690 aa9.87□□□□□ -0.83
VPS50-216ENST00000484954 ARHGAP33O14559 1287 aa9.86□□□□□ -0.83
VPS50-216ENST00000484954 RTN4Q9NQC3 1192 aaKnown RBP9.86□□□□□ -0.83
VPS50-216ENST00000484954 TAOK2Q9UL54 1235 aa9.86□□□□□ -0.83
VPS50-216ENST00000484954 PSEN2P49810 448 aa9.85□□□□□ -0.83
VPS50-216ENST00000484954 DMRTA1Q5VZB9 504 aa9.85□□□□□ -0.83
VPS50-216ENST00000484954 KCTD12Q96CX2 325 aaKnown RBP9.83□□□□□ -0.84
VPS50-216ENST00000484954 HRO43593 1189 aa9.79□□□□□ -0.84
VPS50-216ENST00000484954 CHGAP10645 457 aaKnown RBP9.79□□□□□ -0.84
VPS50-216ENST00000484954 PSDA5PKW4 1024 aaPredicted RBP9.78□□□□□ -0.84
VPS50-216ENST00000484954 PPP1R37O75864 691 aa9.78□□□□□ -0.84
VPS50-216ENST00000484954 HS6ST3Q8IZP7 471 aa9.78□□□□□ -0.84
VPS50-216ENST00000484954 TK2O00142 265 aa9.77□□□□□ -0.85
VPS50-216ENST00000484954 RGS20O76081 388 aa9.77□□□□□ -0.85
VPS50-216ENST00000484954 AMER1Q5JTC6 1135 aaPredicted RBP9.77□□□□□ -0.85
VPS50-216ENST00000484954 STAC3Q96MF2 364 aa9.77□□□□□ -0.85
VPS50-216ENST00000484954 IRX2Q9BZI1 471 aaPredicted RBP9.77□□□□□ -0.85
VPS50-216ENST00000484954 KDM4FA0A1W2PPD8 638 aa9.75□□□□□ -0.85
VPS50-216ENST00000484954 DCAF8L2P0C7V8 631 aa9.75□□□□□ -0.85
VPS50-216ENST00000484954 PTPN5P54829 565 aa9.74□□□□□ -0.85
VPS50-216ENST00000484954 PTCD2Q8WV60 388 aaKnown RBP9.73□□□□□ -0.85
VPS50-216ENST00000484954 NKX1-1Q15270 411 aaPredicted RBP9.72□□□□□ -0.85
VPS50-216ENST00000484954 PPP4R3BQ5MIZ7 849 aa9.72□□□□□ -0.85
VPS50-216ENST00000484954 KCNK17Q96T54 332 aa9.72□□□□□ -0.85
VPS50-216ENST00000484954 PLPP6Q8IY26 295 aa9.71□□□□□ -0.86
VPS50-216ENST00000484954 FOXK1P85037 733 aa9.66□□□□□ -0.86
VPS50-216ENST00000484954 KCNH8Q96L42 1107 aa9.66□□□□□ -0.86
VPS50-216ENST00000484954 DNAJC5Q9H3Z4 198 aa9.66□□□□□ -0.86
VPS50-216ENST00000484954 VPS9D1Q9Y2B5 631 aa9.65□□□□□ -0.86
VPS50-216ENST00000484954 TBC1D12O60347 775 aa9.64□□□□□ -0.87
VPS50-216ENST00000484954 DSG2Q14126 1118 aa9.64□□□□□ -0.87
VPS50-216ENST00000484954 IFFO2Q5TF58 517 aa9.62□□□□□ -0.87
VPS50-216ENST00000484954 UPF1Q92900 1129 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS50-216ENST00000484954 GPHNQ9NQX3 736 aaPredicted RBP9.61□□□□□ -0.87
VPS50-216ENST00000484954 ZNF454Q8N9F8 522 aa9.6□□□□□ -0.87
VPS50-216ENST00000484954 GOLGA8CPA6NN73 597 aa9.58□□□□□ -0.88
VPS50-216ENST00000484954 GTPBP6O43824 516 aaPredicted RBP9.58□□□□□ -0.88
VPS50-216ENST00000484954 THSD4Q6ZMP0 1018 aa9.58□□□□□ -0.88
VPS50-216ENST00000484954 A0A0G2JS52 829 aa9.56□□□□□ -0.88
VPS50-216ENST00000484954 WNT2BQ93097 391 aa9.56□□□□□ -0.88
VPS50-216ENST00000484954 BCL2L12Q9HB09 334 aa9.54□□□□□ -0.88
VPS50-216ENST00000484954 BHMG1C9JSJ3 638 aaPredicted RBP9.53□□□□□ -0.88
VPS50-216ENST00000484954 OXER1Q8TDS5 423 aa9.53□□□□□ -0.88
VPS50-216ENST00000484954 MRPL50Q8N5N7 158 aaKnown RBP9.52□□□□□ -0.89
VPS50-216ENST00000484954 SLC4A5Q9BY07 1137 aa9.52□□□□□ -0.89
VPS50-216ENST00000484954 PTPREP23469 700 aa9.51□□□□□ -0.89
VPS50-216ENST00000484954 ZBED2Q9BTP6 218 aa9.51□□□□□ -0.89
VPS50-216ENST00000484954 FOSBP53539 338 aa9.49□□□□□ -0.89
VPS50-216ENST00000484954 BBXQ8WY36 941 aaPredicted RBP9.49□□□□□ -0.89
VPS50-216ENST00000484954 LCE2BO14633 110 aa9.47□□□□□ -0.89
VPS50-216ENST00000484954 Q6ZNB5 142 aa9.46□□□□□ -0.9
VPS50-216ENST00000484954 RYDENQ9NUL5 291 aaKnown RBP9.46□□□□□ -0.9
VPS50-216ENST00000484954 ADAM33Q9BZ11 813 aa9.45□□□□□ -0.9
VPS50-216ENST00000484954 NBPF3Q9H094 633 aa9.45□□□□□ -0.9
VPS50-216ENST00000484954 PPP1R15BQ5SWA1 713 aa9.44□□□□□ -0.9
VPS50-216ENST00000484954 EVI5O60447 810 aa9.42□□□□□ -0.9
VPS50-216ENST00000484954 CADPS2Q86UW7 1296 aa9.42□□□□□ -0.9
VPS50-216ENST00000484954 ZDHHC16Q969W1 377 aa9.42□□□□□ -0.9
VPS50-216ENST00000484954 JPH4Q96JJ6 628 aa9.41□□□□□ -0.9
VPS50-216ENST00000484954 CRISPLD2Q9H0B8 497 aa9.41□□□□□ -0.9
VPS50-216ENST00000484954 NCKAP5LQ9HCH0 1330 aa9.4□□□□□ -0.9
VPS50-216ENST00000484954 BCAMP50895 628 aa9.39□□□□□ -0.91
VPS50-216ENST00000484954 PROX2Q3B8N5 592 aa9.39□□□□□ -0.91
VPS50-216ENST00000484954 ANO8Q9HCE9 1232 aaPredicted RBP9.39□□□□□ -0.91
VPS50-216ENST00000484954 PAXIP1Q6ZW49 1069 aaPredicted RBP9.38□□□□□ -0.91
VPS50-216ENST00000484954 ANKK1Q8NFD2 765 aa9.38□□□□□ -0.91
VPS50-216ENST00000484954 SPRYD3Q8NCJ5 442 aa9.37□□□□□ -0.91
VPS50-216ENST00000484954 CFAP44Q96MT7 982 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms