RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 VARS2Q5ST30 1063 aaKnown RBP13.93□□□□□ -0.18
SNX13-208ENST00000482558 RNF25Q96BH1 459 aaPredicted RBP13.93□□□□□ -0.18
SNX13-208ENST00000482558 MS4A4AQ96JQ5 239 aa13.93□□□□□ -0.18
SNX13-208ENST00000482558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.92□□□□□ -0.18
SNX13-208ENST00000482558 ZFP91Q96JP5 570 aaPredicted RBP13.92□□□□□ -0.18
SNX13-208ENST00000482558 GPR153Q6NV75 609 aa13.89□□□□□ -0.19
SNX13-208ENST00000482558 ZNF687Q8N1G0 1237 aa13.89□□□□□ -0.19
SNX13-208ENST00000482558 PHF8Q9UPP1 1060 aa13.88□□□□□ -0.19
SNX13-208ENST00000482558 RNF166Q96A37 237 aaPredicted RBP13.86□□□□□ -0.19
SNX13-208ENST00000482558 TAOK2Q9UL54 1235 aa13.83□□□□□ -0.2
SNX13-208ENST00000482558 PTGER2P43116 358 aa13.82□□□□□ -0.2
SNX13-208ENST00000482558 NLRP6P59044 892 aa13.82□□□□□ -0.2
SNX13-208ENST00000482558 MYT1LQ9UL68 1186 aa13.82□□□□□ -0.2
SNX13-208ENST00000482558 FBXO22Q8NEZ5 403 aa13.77□□□□□ -0.21
SNX13-208ENST00000482558 ARSIQ5FYB1 569 aa13.76□□□□□ -0.21
SNX13-208ENST00000482558 BCL11BQ9C0K0 894 aaPredicted RBP13.73□□□□□ -0.21
SNX13-208ENST00000482558 ZCCHC6Q5VYS8 1495 aaKnown RBP13.73□□□□□ -0.21
SNX13-208ENST00000482558 ZNF316A6NFI3 1004 aaPredicted RBP13.72□□□□□ -0.21
SNX13-208ENST00000482558 KIF3CO14782 793 aa13.67□□□□□ -0.22
SNX13-208ENST00000482558 MFRPQ9BY79 579 aa13.67□□□□□ -0.22
SNX13-208ENST00000482558 STK24Q9Y6E0 443 aa13.67□□□□□ -0.22
SNX13-208ENST00000482558 LSM11P83369 360 aaKnown RBP eCLIP13.64□□□□□ -0.237e-19■■■■■ 81
SNX13-208ENST00000482558 ANKRD13DQ6ZTN6 518 aa13.64□□□□□ -0.23
SNX13-208ENST00000482558 KHSRPQ92945 711 aaKnown RBP eCLIP13.64□□□□□ -0.231e-6■■■□□ 16.2
SNX13-208ENST00000482558 PBX2P40425 430 aa13.63□□□□□ -0.23
SNX13-208ENST00000482558 C2orf72A6NCS6 295 aa13.62□□□□□ -0.23
SNX13-208ENST00000482558 SLC34A2O95436 690 aa13.62□□□□□ -0.23
SNX13-208ENST00000482558 STK25O00506 426 aa13.61□□□□□ -0.23
SNX13-208ENST00000482558 DCAF1Q9Y4B6 1507 aa13.56□□□□□ -0.24
SNX13-208ENST00000482558 NUDT7P0C024 238 aa13.55□□□□□ -0.24
SNX13-208ENST00000482558 PCDHGA4Q9Y5G9 962 aa13.54□□□□□ -0.24
SNX13-208ENST00000482558 ECM2O94769 699 aaPredicted RBP13.52□□□□□ -0.25
SNX13-208ENST00000482558 TMC2Q8TDI7 906 aa13.52□□□□□ -0.25
SNX13-208ENST00000482558 LHX6Q9UPM6 363 aa13.51□□□□□ -0.25
SNX13-208ENST00000482558 PSDA5PKW4 1024 aaPredicted RBP13.47□□□□□ -0.25
SNX13-208ENST00000482558 POTEEQ6S8J3 1075 aa13.47□□□□□ -0.25
SNX13-208ENST00000482558 PKD2Q13563 968 aa13.44□□□□□ -0.26
SNX13-208ENST00000482558 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
SNX13-208ENST00000482558 ARHGAP33O14559 1287 aa13.41□□□□□ -0.26
SNX13-208ENST00000482558 RGL2O15211 777 aa13.41□□□□□ -0.26
SNX13-208ENST00000482558 DCAF8L2P0C7V8 631 aa13.4□□□□□ -0.26
SNX13-208ENST00000482558 HCSTQ9UBK5 93 aa13.4□□□□□ -0.26
SNX13-208ENST00000482558 KDM4FA0A1W2PPD8 638 aa13.39□□□□□ -0.27
SNX13-208ENST00000482558 PTCD2Q8WV60 388 aaKnown RBP13.39□□□□□ -0.27
SNX13-208ENST00000482558 ADGRD1Q6QNK2 874 aa13.38□□□□□ -0.27
SNX13-208ENST00000482558 DAXXQ9UER7 740 aaPredicted RBP13.37□□□□□ -0.27
SNX13-208ENST00000482558 TK2O00142 265 aa13.36□□□□□ -0.27
SNX13-208ENST00000482558 PPP1R37O75864 691 aa13.36□□□□□ -0.27
SNX13-208ENST00000482558 PLA2G2EQ9NZK7 142 aa13.34□□□□□ -0.27
SNX13-208ENST00000482558 PRKCSHP14314 528 aaPredicted RBP13.33□□□□□ -0.28
SNX13-208ENST00000482558 FOXK1P85037 733 aa13.33□□□□□ -0.28
SNX13-208ENST00000482558 BCANQ96GW7 911 aa13.33□□□□□ -0.28
SNX13-208ENST00000482558 SHROOM4Q9ULL8 1493 aa13.32□□□□□ -0.28
SNX13-208ENST00000482558 MYO15BQ96JP2 1530 aa13.32□□□□□ -0.28
SNX13-208ENST00000482558 GPHNQ9NQX3 736 aaPredicted RBP13.29□□□□□ -0.28
SNX13-208ENST00000482558 HRO43593 1189 aa13.28□□□□□ -0.28
SNX13-208ENST00000482558 PPP4R3BQ5MIZ7 849 aa13.27□□□□□ -0.29
SNX13-208ENST00000482558 PLPP6Q8IY26 295 aa13.27□□□□□ -0.29
SNX13-208ENST00000482558 TBC1D12O60347 775 aa13.26□□□□□ -0.29
SNX13-208ENST00000482558 PLCB2Q00722 1185 aa13.26□□□□□ -0.29
SNX13-208ENST00000482558 DMRTA1Q5VZB9 504 aa13.24□□□□□ -0.29
SNX13-208ENST00000482558 PSEN2P49810 448 aa13.22□□□□□ -0.29
SNX13-208ENST00000482558 HS6ST3Q8IZP7 471 aa13.22□□□□□ -0.29
SNX13-208ENST00000482558 DSG2Q14126 1118 aa13.2□□□□□ -0.3
SNX13-208ENST00000482558 KCNH8Q96L42 1107 aa13.19□□□□□ -0.3
SNX13-208ENST00000482558 STAC3Q96MF2 364 aa13.17□□□□□ -0.3
SNX13-208ENST00000482558 OXER1Q8TDS5 423 aa13.13□□□□□ -0.31
SNX13-208ENST00000482558 KCTD12Q96CX2 325 aaKnown RBP13.13□□□□□ -0.31
SNX13-208ENST00000482558 KCNK17Q96T54 332 aa13.13□□□□□ -0.31
SNX13-208ENST00000482558 SLC4A5Q9BY07 1137 aa13.1□□□□□ -0.31
SNX13-208ENST00000482558 DNAJC5Q9H3Z4 198 aa13.1□□□□□ -0.31
SNX13-208ENST00000482558 VPS9D1Q9Y2B5 631 aa13.1□□□□□ -0.31
SNX13-208ENST00000482558 HAP1P54257 671 aaPredicted RBP13.09□□□□□ -0.31
SNX13-208ENST00000482558 RYDENQ9NUL5 291 aaKnown RBP13.09□□□□□ -0.31
SNX13-208ENST00000482558 BCL2L12Q9HB09 334 aa13.08□□□□□ -0.32
SNX13-208ENST00000482558 NACADO15069 1562 aa13.07□□□□□ -0.32
SNX13-208ENST00000482558 ARXQ96QS3 562 aa13.07□□□□□ -0.32
SNX13-208ENST00000482558 CRISPLD2Q9H0B8 497 aa13.05□□□□□ -0.32
SNX13-208ENST00000482558 SUPT5HO00267 1087 aaKnown RBP13.04□□□□□ -0.32
SNX13-208ENST00000482558 IFFO2Q5TF58 517 aa13.04□□□□□ -0.32
SNX13-208ENST00000482558 ZNF454Q8N9F8 522 aa13.04□□□□□ -0.32
SNX13-208ENST00000482558 RGS20O76081 388 aa13.02□□□□□ -0.33
SNX13-208ENST00000482558 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.33
SNX13-208ENST00000482558 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.02□□□□□ -0.33
SNX13-208ENST00000482558 FOSBP53539 338 aa13.01□□□□□ -0.33
SNX13-208ENST00000482558 UPF1Q92900 1129 aaKnown RBP eCLIP13.01□□□□□ -0.33
SNX13-208ENST00000482558 BHMG1C9JSJ3 638 aaPredicted RBP13□□□□□ -0.33
SNX13-208ENST00000482558 TPRNQ4KMQ1 711 aa13□□□□□ -0.33
SNX13-208ENST00000482558 PPP1R15BQ5SWA1 713 aa13□□□□□ -0.33
SNX13-208ENST00000482558 BBXQ8WY36 941 aaPredicted RBP13□□□□□ -0.33
SNX13-208ENST00000482558 ANO8Q9HCE9 1232 aaPredicted RBP12.99□□□□□ -0.33
SNX13-208ENST00000482558 PTPREP23469 700 aa12.98□□□□□ -0.33
SNX13-208ENST00000482558 NKX1-1Q15270 411 aaPredicted RBP12.98□□□□□ -0.33
SNX13-208ENST00000482558 PTPN5P54829 565 aa12.97□□□□□ -0.33
SNX13-208ENST00000482558 THSD4Q6ZMP0 1018 aa12.96□□□□□ -0.33
SNX13-208ENST00000482558 JPH4Q96JJ6 628 aa12.96□□□□□ -0.33
SNX13-208ENST00000482558 ZBED2Q9BTP6 218 aa12.96□□□□□ -0.33
SNX13-208ENST00000482558 PDE4AP27815 886 aa12.94□□□□□ -0.34
SNX13-208ENST00000482558 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
SNX13-208ENST00000482558 NCKAP5LQ9HCH0 1330 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms