RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 POGZQ7Z3K3 1410 aa19.78■□□□□ 0.76
SQSTM1-207ENST00000481335 ZFYVE16Q7Z3T8 1539 aa19.78■□□□□ 0.76
SQSTM1-207ENST00000481335 HECW2Q9P2P5 1572 aa19.78■□□□□ 0.76
SQSTM1-207ENST00000481335 ILDR1Q86SU0 546 aaPredicted RBP19.77■□□□□ 0.76
SQSTM1-207ENST00000481335 EFCAB2Q5VUJ9 269 aa19.75■□□□□ 0.75
SQSTM1-207ENST00000481335 SCAPERQ9BY12 1400 aa19.75■□□□□ 0.75
SQSTM1-207ENST00000481335 PREX2Q70Z35 1606 aa19.73■□□□□ 0.75
SQSTM1-207ENST00000481335 ARHGAP5Q13017 1502 aa19.73■□□□□ 0.75
SQSTM1-207ENST00000481335 PTPRMP28827 1452 aa19.73■□□□□ 0.75
SQSTM1-207ENST00000481335 ZNF518AQ6AHZ1 1483 aa19.73■□□□□ 0.75
SQSTM1-207ENST00000481335 MADDQ8WXG6 1647 aa19.73■□□□□ 0.75
SQSTM1-207ENST00000481335 CDC42BPBQ9Y5S2 1711 aa19.72■□□□□ 0.75
SQSTM1-207ENST00000481335 KDM5CP41229 1560 aa19.7■□□□□ 0.74
SQSTM1-207ENST00000481335 ARID4BQ4LE39 1312 aaPredicted RBP19.69■□□□□ 0.74
SQSTM1-207ENST00000481335 YEATS2Q9ULM3 1422 aa19.68■□□□□ 0.74
SQSTM1-207ENST00000481335 CDC42BPAQ5VT25 1732 aa19.67■□□□□ 0.74
SQSTM1-207ENST00000481335 RIMS1Q86UR5 1692 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-207ENST00000481335 SIGLEC1Q9BZZ2 1709 aa19.65■□□□□ 0.74
SQSTM1-207ENST00000481335 C9orf84Q5VXU9 1444 aa19.65■□□□□ 0.74
SQSTM1-207ENST00000481335 ATP10AO60312 1499 aa19.65■□□□□ 0.74
SQSTM1-207ENST00000481335 ABCC1P33527 1531 aa19.65■□□□□ 0.74
SQSTM1-207ENST00000481335 REREQ9P2R6 1566 aa19.64■□□□□ 0.73
SQSTM1-207ENST00000481335 ITSN2Q9NZM3 1697 aa19.63■□□□□ 0.73
SQSTM1-207ENST00000481335 FER1L4A9Z1Z3 1794 aa19.62■□□□□ 0.73
SQSTM1-207ENST00000481335 MLH3Q9UHC1 1453 aa19.6■□□□□ 0.73
SQSTM1-207ENST00000481335 ARHGEF12Q9NZN5 1544 aa19.59■□□□□ 0.73
SQSTM1-207ENST00000481335 DIP2CQ9Y2E4 1556 aa19.58■□□□□ 0.73
SQSTM1-207ENST00000481335 CEP162Q5TB80 1403 aa19.56■□□□□ 0.72
SQSTM1-207ENST00000481335 ABCA6Q8N139 1617 aa19.55■□□□□ 0.72
SQSTM1-207ENST00000481335 EHBP1L1Q8N3D4 1523 aa19.54■□□□□ 0.72
SQSTM1-207ENST00000481335 GPATCH8Q9UKJ3 1502 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-207ENST00000481335 PLEKHH2Q8IVE3 1493 aa19.54■□□□□ 0.72
SQSTM1-207ENST00000481335 LMTK3Q96Q04 1460 aa19.54■□□□□ 0.72
SQSTM1-207ENST00000481335 SAMD9LQ8IVG5 1584 aa19.53■□□□□ 0.72
SQSTM1-207ENST00000481335 AGLP35573 1532 aa19.53■□□□□ 0.72
SQSTM1-207ENST00000481335 AFAP1Q8N556 730 aa19.53■□□□□ 0.72
SQSTM1-207ENST00000481335 KIDINS220Q9ULH0 1771 aa19.52■□□□□ 0.72
SQSTM1-207ENST00000481335 TRAPPC8Q9Y2L5 1435 aa19.52■□□□□ 0.72
SQSTM1-207ENST00000481335 MTUS2Q5JR59 1369 aa19.52■□□□□ 0.72
SQSTM1-207ENST00000481335 KIAA1107Q9UPP5 1409 aa19.51■□□□□ 0.71
SQSTM1-207ENST00000481335 SYCP2Q9BX26 1530 aa19.5■□□□□ 0.71
SQSTM1-207ENST00000481335 CCNB3Q8WWL7 1395 aa19.48■□□□□ 0.71
SQSTM1-207ENST00000481335 PREX1Q8TCU6 1659 aa19.46■□□□□ 0.71
SQSTM1-207ENST00000481335 TIAM1Q13009 1591 aa19.46■□□□□ 0.71
SQSTM1-207ENST00000481335 MYT1LQ9UL68 1186 aa19.46■□□□□ 0.71
SQSTM1-207ENST00000481335 SETD1BQ9UPS6 1966 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-207ENST00000481335 MLECQ14165 292 aa19.45■□□□□ 0.7
SQSTM1-207ENST00000481335 INO80Q9ULG1 1556 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-207ENST00000481335 SUPT6HQ7KZ85 1726 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-207ENST00000481335 ATP7AQ04656 1500 aa19.43■□□□□ 0.7
SQSTM1-207ENST00000481335 CFDP1Q9UEE9 299 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-207ENST00000481335 ZNF777Q9ULD5 760 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-207ENST00000481335 CNTLNQ9NXG0 1405 aa19.4■□□□□ 0.7
SQSTM1-207ENST00000481335 PLXNC1O60486 1568 aa19.4■□□□□ 0.7
SQSTM1-207ENST00000481335 SPAG9O60271 1321 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-207ENST00000481335 VPS8Q8N3P4 1428 aa19.39■□□□□ 0.69
SQSTM1-207ENST00000481335 MROH2AA6NES4 1674 aa19.39■□□□□ 0.69
SQSTM1-207ENST00000481335 C3P01024 1663 aa19.39■□□□□ 0.69
SQSTM1-207ENST00000481335 ADGBQ8N7X0 1667 aa19.38■□□□□ 0.69
SQSTM1-207ENST00000481335 HNRNPMP52272 730 aaKnown RBP eCLIP19.35■□□□□ 0.694e-8■■■■□ 21.3
SQSTM1-207ENST00000481335 MAP3K1Q13233 1512 aa19.35■□□□□ 0.69
SQSTM1-207ENST00000481335 NCOA2Q15596 1464 aa19.35■□□□□ 0.69
SQSTM1-207ENST00000481335 MBD5Q9P267 1494 aa19.35■□□□□ 0.69
SQSTM1-207ENST00000481335 ESF1Q9H501 851 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-207ENST00000481335 A2MP01023 1474 aa19.34■□□□□ 0.69
SQSTM1-207ENST00000481335 RTEL1-TNFRSF6BF6WH68 1400 aa19.34■□□□□ 0.69
SQSTM1-207ENST00000481335 UHRF1BP1Q6BDS2 1440 aa19.34■□□□□ 0.69
SQSTM1-207ENST00000481335 PLPPR3Q6T4P5 718 aa19.32■□□□□ 0.68
SQSTM1-207ENST00000481335 LRRC9Q6ZRR7 1453 aa19.3■□□□□ 0.68
SQSTM1-207ENST00000481335 RSPH4AQ5TD94 716 aa19.3■□□□□ 0.68
SQSTM1-207ENST00000481335 CAMSAP2Q08AD1 1489 aa19.29■□□□□ 0.68
SQSTM1-207ENST00000481335 CCDC141Q6ZP82 1450 aa19.29■□□□□ 0.68
SQSTM1-207ENST00000481335 ARHGEF5Q12774 1597 aa19.28■□□□□ 0.68
SQSTM1-207ENST00000481335 NPATQ14207 1427 aa19.28■□□□□ 0.68
SQSTM1-207ENST00000481335 CEBPAP49715 358 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-207ENST00000481335 HSPA2P54652 639 aa19.28■□□□□ 0.68
SQSTM1-207ENST00000481335 PPP6R1Q9UPN7 881 aa19.27■□□□□ 0.68
SQSTM1-207ENST00000481335 FAM135AQ9P2D6 1515 aa19.26■□□□□ 0.67
SQSTM1-207ENST00000481335 CLTCQ00610 1675 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-207ENST00000481335 LOC105371045A0A1W2PR82 267 aa19.25■□□□□ 0.67
SQSTM1-207ENST00000481335 ZNF644Q9H582 1327 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-207ENST00000481335 STRCQ7RTU9 1775 aa19.24■□□□□ 0.67
SQSTM1-207ENST00000481335 FBXO41Q8TF61 875 aa19.22■□□□□ 0.67
SQSTM1-207ENST00000481335 ZMYM3Q14202 1370 aa19.21■□□□□ 0.67
SQSTM1-207ENST00000481335 DHX29Q7Z478 1369 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-207ENST00000481335 DMRT2Q9Y5R5 561 aa19.21■□□□□ 0.67
SQSTM1-207ENST00000481335 ZNF142P52746 1687 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-207ENST00000481335 MIA2Q96PC5 1412 aa19.2■□□□□ 0.66
SQSTM1-207ENST00000481335 MAST1Q9Y2H9 1570 aa19.19■□□□□ 0.66
SQSTM1-207ENST00000481335 MYO3AQ8NEV4 1616 aa19.17■□□□□ 0.66
SQSTM1-207ENST00000481335 MYOM3Q5VTT5 1437 aa19.17■□□□□ 0.66
SQSTM1-207ENST00000481335 PTPRTO14522 1441 aa19.16■□□□□ 0.66
SQSTM1-207ENST00000481335 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
SQSTM1-207ENST00000481335 TSPY4P0CV99 314 aa19.14■□□□□ 0.65
SQSTM1-207ENST00000481335 TSPY10P0CW01 314 aa19.14■□□□□ 0.65
SQSTM1-207ENST00000481335 GGT6Q6P531 493 aa19.14■□□□□ 0.65
SQSTM1-207ENST00000481335 PTPRKQ15262 1439 aa19.14■□□□□ 0.65
SQSTM1-207ENST00000481335 NCOA1Q15788 1441 aa19.14■□□□□ 0.65
SQSTM1-207ENST00000481335 EIF2AK4Q9P2K8 1649 aaKnown RBP19.13■□□□□ 0.65
SQSTM1-207ENST00000481335 CEP170BQ9Y4F5 1589 aaPredicted RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms