RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 NISCHQ9Y2I1 1504 aa30.27■■■□□ 2.44
SQSTM1-207ENST00000481335 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
SQSTM1-207ENST00000481335 ABCC9O60706 1549 aa26.81■■□□□ 1.88
SQSTM1-207ENST00000481335 RB1CC1Q8TDY2 1594 aa25.77■■□□□ 1.72
SQSTM1-207ENST00000481335 NACADO15069 1562 aa25.65■■□□□ 1.7
SQSTM1-207ENST00000481335 MYO15BQ96JP2 1530 aa25.42■■□□□ 1.66
SQSTM1-207ENST00000481335 DCAF8L2P0C7V8 631 aa25.24■■□□□ 1.63
SQSTM1-207ENST00000481335 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
SQSTM1-207ENST00000481335 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
SQSTM1-207ENST00000481335 DCAF1Q9Y4B6 1507 aa25.14■■□□□ 1.62
SQSTM1-207ENST00000481335 BICRAQ9NZM4 1560 aa24.94■■□□□ 1.58
SQSTM1-207ENST00000481335 PABPN1Q86U42 306 aaKnown RBP eCLIP24.9■■□□□ 1.58
SQSTM1-207ENST00000481335 DNAJC5BQ9UF47 199 aa24.9■■□□□ 1.58
SQSTM1-207ENST00000481335 SHROOM4Q9ULL8 1493 aa24.82■■□□□ 1.56
SQSTM1-207ENST00000481335 SCRIBQ14160 1630 aa24.64■■□□□ 1.54
SQSTM1-207ENST00000481335 EIF4G1Q04637 1599 aaKnown RBP24.33■■□□□ 1.49
SQSTM1-207ENST00000481335 CC2D2AQ9P2K1 1620 aa24.32■■□□□ 1.48
SQSTM1-207ENST00000481335 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
SQSTM1-207ENST00000481335 NCAPD3P42695 1498 aa23.62■■□□□ 1.37
SQSTM1-207ENST00000481335 SMARCA4P51532 1647 aa23.6■■□□□ 1.37
SQSTM1-207ENST00000481335 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
SQSTM1-207ENST00000481335 ATAD2BQ9ULI0 1458 aa23.55■■□□□ 1.36
SQSTM1-207ENST00000481335 BAZ1AQ9NRL2 1556 aaPredicted RBP23.54■■□□□ 1.36
SQSTM1-207ENST00000481335 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
SQSTM1-207ENST00000481335 PEG3Q9GZU2 1588 aa23.45■■□□□ 1.34
SQSTM1-207ENST00000481335 BAZ1BQ9UIG0 1483 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-207ENST00000481335 MROH2BQ7Z745 1585 aa23.27■■□□□ 1.32
SQSTM1-207ENST00000481335 ERCC6Q03468 1493 aa23.2■■□□□ 1.3
SQSTM1-207ENST00000481335 CUX2O14529 1486 aa23.19■■□□□ 1.3
SQSTM1-207ENST00000481335 LAMC3Q9Y6N6 1575 aa23.12■■□□□ 1.29
SQSTM1-207ENST00000481335 NESP48681 1621 aa23.08■■□□□ 1.28
SQSTM1-207ENST00000481335 WIZO95785 1651 aa23.01■■□□□ 1.27
SQSTM1-207ENST00000481335 DNAJC5Q9H3Z4 198 aa22.98■■□□□ 1.27
SQSTM1-207ENST00000481335 THOC2Q8NI27 1593 aaKnown RBP22.94■■□□□ 1.26
SQSTM1-207ENST00000481335 PDS5BQ9NTI5 1447 aa22.92■■□□□ 1.26
SQSTM1-207ENST00000481335 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
SQSTM1-207ENST00000481335 CADPSQ9ULU8 1353 aa22.88■■□□□ 1.25
SQSTM1-207ENST00000481335 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
SQSTM1-207ENST00000481335 TOP2AP11388 1531 aaKnown RBP22.81■■□□□ 1.24
SQSTM1-207ENST00000481335 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
SQSTM1-207ENST00000481335 WDR62O43379 1518 aa22.68■■□□□ 1.22
SQSTM1-207ENST00000481335 CFTRP13569 1480 aa22.68■■□□□ 1.22
SQSTM1-207ENST00000481335 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
SQSTM1-207ENST00000481335 FANCD2Q9BXW9 1451 aa22.62■■□□□ 1.21
SQSTM1-207ENST00000481335 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
SQSTM1-207ENST00000481335 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
SQSTM1-207ENST00000481335 URB2Q14146 1524 aaKnown RBP22.4■■□□□ 1.18
SQSTM1-207ENST00000481335 ABCC8Q09428 1581 aa22.28■■□□□ 1.16
SQSTM1-207ENST00000481335 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
SQSTM1-207ENST00000481335 IFT140Q96RY7 1462 aa22.21■■□□□ 1.15
SQSTM1-207ENST00000481335 DNMBPQ6XZF7 1577 aa22.2■■□□□ 1.14
SQSTM1-207ENST00000481335 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
SQSTM1-207ENST00000481335 OSCARQ8IYS5 282 aa22.05■■□□□ 1.12
SQSTM1-207ENST00000481335 EIF4G3O43432 1585 aaKnown RBP22.04■■□□□ 1.12
SQSTM1-207ENST00000481335 TARBP1Q13395 1621 aaKnown RBP22.03■■□□□ 1.12
SQSTM1-207ENST00000481335 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
SQSTM1-207ENST00000481335 WDR97A6NE52 1622 aa21.97■■□□□ 1.11
SQSTM1-207ENST00000481335 CUX1P39880 1505 aa21.87■■□□□ 1.09
SQSTM1-207ENST00000481335 FGD5Q6ZNL6 1462 aa21.87■■□□□ 1.09
SQSTM1-207ENST00000481335 AQRO60306 1485 aaKnown RBP eCLIP21.86■■□□□ 1.098e-8■■■■□ 22.7
SQSTM1-207ENST00000481335 SOGA1O94964 1423 aa21.86■■□□□ 1.09
SQSTM1-207ENST00000481335 CHD1O14646 1710 aa21.84■■□□□ 1.09
SQSTM1-207ENST00000481335 RAD54L2Q9Y4B4 1467 aa21.83■■□□□ 1.08
SQSTM1-207ENST00000481335 SUPT5HO00267 1087 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-207ENST00000481335 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
SQSTM1-207ENST00000481335 RIMBP3CA6NJZ7 1639 aa21.79■■□□□ 1.08
SQSTM1-207ENST00000481335 RIMBP3BA6NNM3 1639 aa21.79■■□□□ 1.08
SQSTM1-207ENST00000481335 RIMBP3Q9UFD9 1639 aa21.79■■□□□ 1.08
SQSTM1-207ENST00000481335 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
SQSTM1-207ENST00000481335 MAGI1Q96QZ7 1491 aaPredicted RBP21.74■■□□□ 1.07
SQSTM1-207ENST00000481335 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-207ENST00000481335 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
SQSTM1-207ENST00000481335 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
SQSTM1-207ENST00000481335 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
SQSTM1-207ENST00000481335 PBRM1Q86U86 1689 aa21.68■■□□□ 1.06
SQSTM1-207ENST00000481335 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
SQSTM1-207ENST00000481335 ABCA5Q8WWZ7 1642 aa21.66■■□□□ 1.06
SQSTM1-207ENST00000481335 TOP2BQ02880 1626 aa21.64■■□□□ 1.05
SQSTM1-207ENST00000481335 GAPVD1Q14C86 1478 aa21.64■■□□□ 1.05
SQSTM1-207ENST00000481335 SYNJ1O43426 1573 aa21.63■■□□□ 1.05
SQSTM1-207ENST00000481335 SYNJ2O15056 1496 aa21.63■■□□□ 1.05
SQSTM1-207ENST00000481335 FBLN2P98095 1184 aa21.62■■□□□ 1.05
SQSTM1-207ENST00000481335 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.054e-10■■□□□ 11.8
SQSTM1-207ENST00000481335 CLASP1Q7Z460 1538 aa21.6■■□□□ 1.05
SQSTM1-207ENST00000481335 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
SQSTM1-207ENST00000481335 ARAP1Q96P48 1450 aa21.52■■□□□ 1.03
SQSTM1-207ENST00000481335 ADAMTS12P58397 1594 aa21.47■■□□□ 1.03
SQSTM1-207ENST00000481335 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.02
SQSTM1-207ENST00000481335 CYB5RLQ6IPT4 315 aa21.44■■□□□ 1.02
SQSTM1-207ENST00000481335 GRIN2AQ12879 1464 aa21.43■■□□□ 1.02
SQSTM1-207ENST00000481335 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
SQSTM1-207ENST00000481335 NUP160Q12769 1436 aa21.37■■□□□ 1.01
SQSTM1-207ENST00000481335 CEP170Q5SW79 1584 aa21.32■■□□□ 1
SQSTM1-207ENST00000481335 SHROOM2Q13796 1616 aa21.29■■□□□ 1
SQSTM1-207ENST00000481335 CUL7Q14999 1698 aa21.21■□□□□ 0.99
SQSTM1-207ENST00000481335 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
SQSTM1-207ENST00000481335 RUSC2Q8N2Y8 1516 aa21.17■□□□□ 0.98
SQSTM1-207ENST00000481335 ERCC6L2Q5T890 1561 aa21.17■□□□□ 0.98
SQSTM1-207ENST00000481335 TRHP20396 242 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-207ENST00000481335 IGF1RP08069 1367 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms