RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 COLQQ9Y215 455 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-213ENST00000480102 DNMBPQ6XZF7 1577 aa8.65□□□□□ -1.02
PTCD3-213ENST00000480102 MKRN3Q13064 507 aaKnown RBP8.65□□□□□ -1.02
PTCD3-213ENST00000480102 DNAJC5Q9H3Z4 198 aa8.65□□□□□ -1.02
PTCD3-213ENST00000480102 PRDM2Q13029 1718 aa8.64□□□□□ -1.03
PTCD3-213ENST00000480102 SUPT5HO00267 1087 aaKnown RBP8.64□□□□□ -1.03
PTCD3-213ENST00000480102 PLCG2P16885 1265 aa8.63□□□□□ -1.03
PTCD3-213ENST00000480102 WDR97A6NE52 1622 aa8.62□□□□□ -1.03
PTCD3-213ENST00000480102 BCL11BQ9C0K0 894 aaPredicted RBP8.62□□□□□ -1.03
PTCD3-213ENST00000480102 OCEL1Q9H607 264 aa8.62□□□□□ -1.03
PTCD3-213ENST00000480102 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
PTCD3-213ENST00000480102 POLA1P09884 1462 aaPredicted RBP8.6□□□□□ -1.03
PTCD3-213ENST00000480102 STK25O00506 426 aa8.6□□□□□ -1.03
PTCD3-213ENST00000480102 ILDR1Q86SU0 546 aaPredicted RBP8.6□□□□□ -1.03
PTCD3-213ENST00000480102 EFCAB3Q8N7B9 438 aa8.6□□□□□ -1.03
PTCD3-213ENST00000480102 STK24Q9Y6E0 443 aa8.6□□□□□ -1.03
PTCD3-213ENST00000480102 POTEJP0CG39 1038 aa8.59□□□□□ -1.03
PTCD3-213ENST00000480102 PDCD7Q8N8D1 485 aaKnown RBP8.59□□□□□ -1.03
PTCD3-213ENST00000480102 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.59□□□□□ -1.033e-8■■□□□ 13.5
PTCD3-213ENST00000480102 SOGA1O94964 1423 aa8.56□□□□□ -1.04
PTCD3-213ENST00000480102 CUX1P39880 1505 aa8.56□□□□□ -1.04
PTCD3-213ENST00000480102 OTUD5Q96G74 571 aa8.56□□□□□ -1.04
PTCD3-213ENST00000480102 RTN4Q9NQC3 1192 aaKnown RBP8.56□□□□□ -1.04
PTCD3-213ENST00000480102 WRNQ14191 1432 aaPredicted RBP eCLIP8.55□□□□□ -1.04
PTCD3-213ENST00000480102 TARBP1Q13395 1621 aaKnown RBP8.55□□□□□ -1.04
PTCD3-213ENST00000480102 SOX12O15370 315 aa8.55□□□□□ -1.04
PTCD3-213ENST00000480102 MAMSTRQ6ZN01 415 aa8.55□□□□□ -1.04
PTCD3-213ENST00000480102 ABCA10Q8WWZ4 1543 aa8.54□□□□□ -1.04
PTCD3-213ENST00000480102 HS6ST3Q8IZP7 471 aa8.54□□□□□ -1.04
PTCD3-213ENST00000480102 FGD5Q6ZNL6 1462 aa8.53□□□□□ -1.04
PTCD3-213ENST00000480102 ZNF608Q9ULD9 1512 aaPredicted RBP8.53□□□□□ -1.04
PTCD3-213ENST00000480102 SCUBE2Q9NQ36 999 aa8.52□□□□□ -1.05
PTCD3-213ENST00000480102 TOP2BQ02880 1626 aa8.51□□□□□ -1.05
PTCD3-213ENST00000480102 CHGAP10645 457 aaKnown RBP8.51□□□□□ -1.05
PTCD3-213ENST00000480102 PHF8Q9UPP1 1060 aa8.51□□□□□ -1.05
PTCD3-213ENST00000480102 GRIN2BQ13224 1484 aa8.51□□□□□ -1.05
PTCD3-213ENST00000480102 MAGI1Q96QZ7 1491 aaPredicted RBP8.51□□□□□ -1.05
PTCD3-213ENST00000480102 DPY19L2Q6NUT2 758 aa8.5□□□□□ -1.05
PTCD3-213ENST00000480102 L3MBTL3Q96JM7 780 aaPredicted RBP8.49□□□□□ -1.05
PTCD3-213ENST00000480102 MS4A4AQ96JQ5 239 aa8.49□□□□□ -1.05
PTCD3-213ENST00000480102 MFRPQ9BY79 579 aa8.49□□□□□ -1.05
PTCD3-213ENST00000480102 BIVM-ERCC5R4GMW8 1640 aa8.48□□□□□ -1.05
PTCD3-213ENST00000480102 NLRP6P59044 892 aa8.48□□□□□ -1.05
PTCD3-213ENST00000480102 FBXO22Q8NEZ5 403 aa8.48□□□□□ -1.05
PTCD3-213ENST00000480102 AQRO60306 1485 aaKnown RBP eCLIP8.48□□□□□ -1.058e-8■■■■■ 29
PTCD3-213ENST00000480102 RAD54L2Q9Y4B4 1467 aa8.48□□□□□ -1.05
PTCD3-213ENST00000480102 GAPVD1Q14C86 1478 aa8.47□□□□□ -1.05
PTCD3-213ENST00000480102 EIF4G3O43432 1585 aaKnown RBP8.47□□□□□ -1.05
PTCD3-213ENST00000480102 TDRD9Q8NDG6 1382 aaKnown RBP8.47□□□□□ -1.05
PTCD3-213ENST00000480102 BOLA1Q9Y3E2 137 aa8.46□□□□□ -1.06
PTCD3-213ENST00000480102 SYNJ2O15056 1496 aa8.45□□□□□ -1.06
PTCD3-213ENST00000480102 ERICH3Q5RHP9 1530 aa8.44□□□□□ -1.06
PTCD3-213ENST00000480102 G3V3G9 751 aa8.44□□□□□ -1.06
PTCD3-213ENST00000480102 C3orf67Q6ZVT6 689 aa8.44□□□□□ -1.06
PTCD3-213ENST00000480102 TMEM121BQ9BXQ6 578 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-213ENST00000480102 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.43□□□□□ -1.06
PTCD3-213ENST00000480102 SYNJ1O43426 1573 aa8.43□□□□□ -1.06
PTCD3-213ENST00000480102 ABCA5Q8WWZ7 1642 aa8.43□□□□□ -1.06
PTCD3-213ENST00000480102 FHAD1B1AJZ9 1412 aa8.42□□□□□ -1.06
PTCD3-213ENST00000480102 SNAPC4Q5SXM2 1469 aa8.41□□□□□ -1.06
PTCD3-213ENST00000480102 KIF27Q86VH2 1401 aa8.41□□□□□ -1.06
PTCD3-213ENST00000480102 NKX1-1Q15270 411 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-213ENST00000480102 MICALL2Q8IY33 904 aa8.41□□□□□ -1.06
PTCD3-213ENST00000480102 SLAIN1Q8ND83 568 aa8.41□□□□□ -1.06
PTCD3-213ENST00000480102 POTEMA6NI47 508 aa8.4□□□□□ -1.06
PTCD3-213ENST00000480102 CHMP7Q8WUX9 453 aaPredicted RBP8.4□□□□□ -1.06
PTCD3-213ENST00000480102 NUP160Q12769 1436 aa8.39□□□□□ -1.07
PTCD3-213ENST00000480102 IGF1RP08069 1367 aa8.38□□□□□ -1.07
PTCD3-213ENST00000480102 GRIN2AQ12879 1464 aa8.37□□□□□ -1.07
PTCD3-213ENST00000480102 CLASP1Q7Z460 1538 aa8.36□□□□□ -1.07
PTCD3-213ENST00000480102 POTEGQ6S5H5 508 aa8.36□□□□□ -1.07
PTCD3-213ENST00000480102 RYDENQ9NUL5 291 aaKnown RBP8.36□□□□□ -1.07
PTCD3-213ENST00000480102 PPP1R37O75864 691 aa8.35□□□□□ -1.07
PTCD3-213ENST00000480102 ADAMTS12P58397 1594 aa8.34□□□□□ -1.07
PTCD3-213ENST00000480102 ARHGEF11O15085 1522 aa8.33□□□□□ -1.08
PTCD3-213ENST00000480102 GTPBP6O43824 516 aaPredicted RBP8.31□□□□□ -1.08
PTCD3-213ENST00000480102 TMEM92Q6UXU6 159 aa8.31□□□□□ -1.08
PTCD3-213ENST00000480102 BBXQ8WY36 941 aaPredicted RBP8.31□□□□□ -1.08
PTCD3-213ENST00000480102 EEA1Q15075 1411 aa8.3□□□□□ -1.08
PTCD3-213ENST00000480102 KIAA0586Q9BVV6 1533 aa8.3□□□□□ -1.08
PTCD3-213ENST00000480102 CARMIL1Q5VZK9 1371 aa8.3□□□□□ -1.08
PTCD3-213ENST00000480102 CUL7Q14999 1698 aa8.28□□□□□ -1.08
PTCD3-213ENST00000480102 PBRM1Q86U86 1689 aa8.28□□□□□ -1.08
PTCD3-213ENST00000480102 SNPHO15079 494 aa8.28□□□□□ -1.08
PTCD3-213ENST00000480102 PCDH10Q9P2E7 1040 aa8.28□□□□□ -1.08
PTCD3-213ENST00000480102 LCE2DQ5TA82 110 aaPredicted RBP8.27□□□□□ -1.09
PTCD3-213ENST00000480102 PRXQ9BXM0 1461 aa8.26□□□□□ -1.09
PTCD3-213ENST00000480102 FAM163AQ96GL9 167 aaPredicted RBP8.26□□□□□ -1.09
PTCD3-213ENST00000480102 JPH4Q96JJ6 628 aa8.26□□□□□ -1.09
PTCD3-213ENST00000480102 RAPGEF2Q9Y4G8 1499 aa8.26□□□□□ -1.09
PTCD3-213ENST00000480102 KIF3CO14782 793 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 CEP170Q5SW79 1584 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 CHD1O14646 1710 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 ARAP1Q96P48 1450 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 RIMBP3CA6NJZ7 1639 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 RIMBP3BA6NNM3 1639 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 SHROOM2Q13796 1616 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 RIMBP3Q9UFD9 1639 aa8.25□□□□□ -1.09
PTCD3-213ENST00000480102 C2orf72A6NCS6 295 aa8.23□□□□□ -1.09
PTCD3-213ENST00000480102 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms