RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 CLIP1P30622 1438 aa28.33■■■□□ 2.13
ECHDC1-216ENST00000479525 CASKIN1Q8WXD9 1431 aa28.33■■■□□ 2.13
ECHDC1-216ENST00000479525 CDK11AQ9UQ88 783 aaPredicted RBP28.33■■■□□ 2.13
ECHDC1-216ENST00000479525 ZMYM4Q5VZL5 1548 aa28.32■■■□□ 2.12
ECHDC1-216ENST00000479525 ARHGAP5Q13017 1502 aa28.31■■■□□ 2.12
ECHDC1-216ENST00000479525 ZFYVE16Q7Z3T8 1539 aa28.31■■■□□ 2.12
ECHDC1-216ENST00000479525 RIMS1Q86UR5 1692 aaKnown RBP28.31■■■□□ 2.12
ECHDC1-216ENST00000479525 POGZQ7Z3K3 1410 aa28.28■■■□□ 2.12
ECHDC1-216ENST00000479525 PTPRMP28827 1452 aa28.28■■■□□ 2.12
ECHDC1-216ENST00000479525 CCDC18Q5T9S5 1454 aa28.26■■■□□ 2.11
ECHDC1-216ENST00000479525 PLPPR3Q6T4P5 718 aa28.25■■■□□ 2.11
ECHDC1-216ENST00000479525 FYCO1Q9BQS8 1478 aa28.25■■■□□ 2.11
ECHDC1-216ENST00000479525 EFCAB2Q5VUJ9 269 aa28.24■■■□□ 2.11
ECHDC1-216ENST00000479525 CDC42BPAQ5VT25 1732 aa28.24■■■□□ 2.11
ECHDC1-216ENST00000479525 PREX2Q70Z35 1606 aa28.24■■■□□ 2.11
ECHDC1-216ENST00000479525 MLECQ14165 292 aa28.22■■■□□ 2.11
ECHDC1-216ENST00000479525 AFAP1Q8N556 730 aa28.17■■■□□ 2.1
ECHDC1-216ENST00000479525 FER1L4A9Z1Z3 1794 aa28.17■■■□□ 2.1
ECHDC1-216ENST00000479525 ITSN2Q9NZM3 1697 aa28.16■■■□□ 2.1
ECHDC1-216ENST00000479525 MAGI2Q86UL8 1455 aa28.15■■■□□ 2.1
ECHDC1-216ENST00000479525 MYT1LQ9UL68 1186 aa28.13■■■□□ 2.09
ECHDC1-216ENST00000479525 ARHGEF12Q9NZN5 1544 aa28.13■■■□□ 2.09
ECHDC1-216ENST00000479525 ABCC1P33527 1531 aa28.12■■■□□ 2.09
ECHDC1-216ENST00000479525 KDM5CP41229 1560 aa28.11■■■□□ 2.09
ECHDC1-216ENST00000479525 ZNF518AQ6AHZ1 1483 aa28.11■■■□□ 2.09
ECHDC1-216ENST00000479525 TRAPPC8Q9Y2L5 1435 aa28.09■■■□□ 2.09
ECHDC1-216ENST00000479525 ABCA6Q8N139 1617 aa28.09■■■□□ 2.09
ECHDC1-216ENST00000479525 ATP10AO60312 1499 aa28.09■■■□□ 2.09
ECHDC1-216ENST00000479525 CEP162Q5TB80 1403 aa28.08■■■□□ 2.09
ECHDC1-216ENST00000479525 DIP2CQ9Y2E4 1556 aa28.08■■■□□ 2.09
ECHDC1-216ENST00000479525 ZNF777Q9ULD5 760 aaPredicted RBP28.08■■■□□ 2.09
ECHDC1-216ENST00000479525 C9orf84Q5VXU9 1444 aa28.08■■■□□ 2.09
ECHDC1-216ENST00000479525 SAMD9LQ8IVG5 1584 aa28.06■■■□□ 2.08
ECHDC1-216ENST00000479525 LOC105371045A0A1W2PR82 267 aa28.03■■■□□ 2.08
ECHDC1-216ENST00000479525 KIDINS220Q9ULH0 1771 aa28.01■■■□□ 2.08
ECHDC1-216ENST00000479525 SYCP2Q9BX26 1530 aa28.01■■■□□ 2.07
ECHDC1-216ENST00000479525 GPATCH8Q9UKJ3 1502 aaKnown RBP28.01■■■□□ 2.07
ECHDC1-216ENST00000479525 LMTK3Q96Q04 1460 aa28■■■□□ 2.07
ECHDC1-216ENST00000479525 MTUS2Q5JR59 1369 aa27.98■■■□□ 2.07
ECHDC1-216ENST00000479525 ILDR1Q86SU0 546 aaPredicted RBP27.95■■■□□ 2.06
ECHDC1-216ENST00000479525 MLH3Q9UHC1 1453 aa27.94■■■□□ 2.06
ECHDC1-216ENST00000479525 CEBPAP49715 358 aaPredicted RBP27.94■■■□□ 2.06
ECHDC1-216ENST00000479525 HNRNPMP52272 730 aaKnown RBP eCLIP27.94■■■□□ 2.063e-8■■■■■ 29
ECHDC1-216ENST00000479525 HSPA2P54652 639 aa27.94■■■□□ 2.06
ECHDC1-216ENST00000479525 TIAM1Q13009 1591 aa27.93■■■□□ 2.06
ECHDC1-216ENST00000479525 CCNB3Q8WWL7 1395 aa27.92■■■□□ 2.06
ECHDC1-216ENST00000479525 EHBP1L1Q8N3D4 1523 aa27.91■■■□□ 2.06
ECHDC1-216ENST00000479525 SUPT6HQ7KZ85 1726 aaKnown RBP27.89■■■□□ 2.05
ECHDC1-216ENST00000479525 CFDP1Q9UEE9 299 aaPredicted RBP27.88■■■□□ 2.05
ECHDC1-216ENST00000479525 REREQ9P2R6 1566 aa27.88■■■□□ 2.05
ECHDC1-216ENST00000479525 ZNF644Q9H582 1327 aaPredicted RBP27.86■■■□□ 2.05
ECHDC1-216ENST00000479525 C3P01024 1663 aa27.85■■■□□ 2.05
ECHDC1-216ENST00000479525 PREX1Q8TCU6 1659 aa27.82■■■□□ 2.04
ECHDC1-216ENST00000479525 ATP7AQ04656 1500 aa27.82■■■□□ 2.04
ECHDC1-216ENST00000479525 SPAG9O60271 1321 aaKnown RBP27.81■■■□□ 2.04
ECHDC1-216ENST00000479525 INO80Q9ULG1 1556 aaPredicted RBP27.81■■■□□ 2.04
ECHDC1-216ENST00000479525 AGLP35573 1532 aa27.79■■■□□ 2.04
ECHDC1-216ENST00000479525 NCOA2Q15596 1464 aa27.76■■■□□ 2.03
ECHDC1-216ENST00000479525 PLEKHH2Q8IVE3 1493 aa27.75■■■□□ 2.03
ECHDC1-216ENST00000479525 KIAA1107Q9UPP5 1409 aa27.74■■■□□ 2.03
ECHDC1-216ENST00000479525 VPS8Q8N3P4 1428 aa27.74■■■□□ 2.03
ECHDC1-216ENST00000479525 CLTCQ00610 1675 aaKnown RBP27.71■■■□□ 2.03
ECHDC1-216ENST00000479525 ESF1Q9H501 851 aaKnown RBP27.7■■■□□ 2.02
ECHDC1-216ENST00000479525 PLXNC1O60486 1568 aa27.69■■■□□ 2.02
ECHDC1-216ENST00000479525 ADGBQ8N7X0 1667 aa27.69■■■□□ 2.02
ECHDC1-216ENST00000479525 MBD5Q9P267 1494 aa27.69■■■□□ 2.02
ECHDC1-216ENST00000479525 A2MP01023 1474 aa27.68■■■□□ 2.02
ECHDC1-216ENST00000479525 CAMSAP2Q08AD1 1489 aa27.68■■■□□ 2.02
ECHDC1-216ENST00000479525 SETD1BQ9UPS6 1966 aaKnown RBP27.66■■■□□ 2.02
ECHDC1-216ENST00000479525 STRCQ7RTU9 1775 aa27.66■■■□□ 2.02
ECHDC1-216ENST00000479525 LRRC9Q6ZRR7 1453 aa27.64■■■□□ 2.01
ECHDC1-216ENST00000479525 UHRF1BP1Q6BDS2 1440 aa27.64■■■□□ 2.01
ECHDC1-216ENST00000479525 KANK4Q5T7N3 995 aaPredicted RBP27.63■■■□□ 2.01
ECHDC1-216ENST00000479525 MROH2AA6NES4 1674 aa27.62■■■□□ 2.01
ECHDC1-216ENST00000479525 GGT6Q6P531 493 aa27.61■■■□□ 2.01
ECHDC1-216ENST00000479525 CCDC141Q6ZP82 1450 aa27.58■■■□□ 2.01
ECHDC1-216ENST00000479525 CNTLNQ9NXG0 1405 aa27.56■■■□□ 2
ECHDC1-216ENST00000479525 ZMYM3Q14202 1370 aa27.54■■■□□ 2
ECHDC1-216ENST00000479525 RTEL1-TNFRSF6BF6WH68 1400 aa27.5■■□□□ 1.99
ECHDC1-216ENST00000479525 ARHGEF5Q12774 1597 aa27.5■■□□□ 1.99
ECHDC1-216ENST00000479525 FBXO41Q8TF61 875 aa27.49■■□□□ 1.99
ECHDC1-216ENST00000479525 MYO3AQ8NEV4 1616 aa27.48■■□□□ 1.99
ECHDC1-216ENST00000479525 DHX29Q7Z478 1369 aaKnown RBP27.46■■□□□ 1.99
ECHDC1-216ENST00000479525 MAP3K1Q13233 1512 aa27.46■■□□□ 1.99
ECHDC1-216ENST00000479525 KIF3BO15066 747 aa27.46■■□□□ 1.99
ECHDC1-216ENST00000479525 CAMSAP1Q5T5Y3 1602 aa27.44■■□□□ 1.98
ECHDC1-216ENST00000479525 PTPRKQ15262 1439 aa27.42■■□□□ 1.98
ECHDC1-216ENST00000479525 MYOM3Q5VTT5 1437 aa27.42■■□□□ 1.98
ECHDC1-216ENST00000479525 NPATQ14207 1427 aa27.41■■□□□ 1.98
ECHDC1-216ENST00000479525 ZNF142P52746 1687 aaPredicted RBP27.4■■□□□ 1.98
ECHDC1-216ENST00000479525 TSPY4P0CV99 314 aa27.38■■□□□ 1.97
ECHDC1-216ENST00000479525 TSPY10P0CW01 314 aa27.38■■□□□ 1.97
ECHDC1-216ENST00000479525 CERKQ8TCT0 537 aa27.38■■□□□ 1.97
ECHDC1-216ENST00000479525 CEP170BQ9Y4F5 1589 aaPredicted RBP27.38■■□□□ 1.97
ECHDC1-216ENST00000479525 NCOA1Q15788 1441 aa27.37■■□□□ 1.97
ECHDC1-216ENST00000479525 MAST1Q9Y2H9 1570 aa27.36■■□□□ 1.97
ECHDC1-216ENST00000479525 PTPN23Q9H3S7 1636 aa27.36■■□□□ 1.97
ECHDC1-216ENST00000479525 APLP2Q06481 763 aa27.35■■□□□ 1.97
ECHDC1-216ENST00000479525 RSPH4AQ5TD94 716 aa27.35■■□□□ 1.97
ECHDC1-216ENST00000479525 CROCC2H7BZ55 1655 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms