RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 ZMYM4Q5VZL5 1548 aa17.39■□□□□ 0.37
SEC13-214ENST00000476597 AFAP1Q8N556 730 aa17.39■□□□□ 0.37
SEC13-214ENST00000476597 ARHGAP5Q13017 1502 aa17.37■□□□□ 0.37
SEC13-214ENST00000476597 ARHGEF40Q8TER5 1519 aa17.37■□□□□ 0.37
SEC13-214ENST00000476597 PTPRMP28827 1452 aa17.36■□□□□ 0.37
SEC13-214ENST00000476597 ZFYVE16Q7Z3T8 1539 aa17.36■□□□□ 0.37
SEC13-214ENST00000476597 ADAMTSL3P82987 1691 aa17.36■□□□□ 0.37
SEC13-214ENST00000476597 MYO5CQ9NQX4 1742 aa17.35■□□□□ 0.37
SEC13-214ENST00000476597 LOC105371045A0A1W2PR82 267 aa17.34■□□□□ 0.37
SEC13-214ENST00000476597 ATP10AO60312 1499 aa17.33■□□□□ 0.37
SEC13-214ENST00000476597 CEP162Q5TB80 1403 aa17.33■□□□□ 0.36
SEC13-214ENST00000476597 ZNF518AQ6AHZ1 1483 aa17.32■□□□□ 0.36
SEC13-214ENST00000476597 BCORL1Q5H9F3 1711 aa17.31■□□□□ 0.36
SEC13-214ENST00000476597 MLECQ14165 292 aa17.31■□□□□ 0.36
SEC13-214ENST00000476597 HECW2Q9P2P5 1572 aa17.3■□□□□ 0.36
SEC13-214ENST00000476597 MYT1LQ9UL68 1186 aa17.29■□□□□ 0.36
SEC13-214ENST00000476597 ZNF777Q9ULD5 760 aaPredicted RBP17.29■□□□□ 0.36
SEC13-214ENST00000476597 ARHGEF12Q9NZN5 1544 aa17.29■□□□□ 0.36
SEC13-214ENST00000476597 GPATCH8Q9UKJ3 1502 aaKnown RBP17.29■□□□□ 0.36
SEC13-214ENST00000476597 TRAPPC8Q9Y2L5 1435 aa17.29■□□□□ 0.36
SEC13-214ENST00000476597 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
SEC13-214ENST00000476597 MTUS2Q5JR59 1369 aa17.28■□□□□ 0.36
SEC13-214ENST00000476597 CDC42BPBQ9Y5S2 1711 aa17.27■□□□□ 0.36
SEC13-214ENST00000476597 MLH3Q9UHC1 1453 aa17.27■□□□□ 0.36
SEC13-214ENST00000476597 CFDP1Q9UEE9 299 aaPredicted RBP17.27■□□□□ 0.36
SEC13-214ENST00000476597 MADDQ8WXG6 1647 aa17.27■□□□□ 0.36
SEC13-214ENST00000476597 KDM5CP41229 1560 aa17.27■□□□□ 0.35
SEC13-214ENST00000476597 PREX2Q70Z35 1606 aa17.25■□□□□ 0.35
SEC13-214ENST00000476597 CCNB3Q8WWL7 1395 aa17.25■□□□□ 0.35
SEC13-214ENST00000476597 HNRNPMP52272 730 aaKnown RBP eCLIP17.24■□□□□ 0.35
SEC13-214ENST00000476597 ABCC1P33527 1531 aa17.24■□□□□ 0.35
SEC13-214ENST00000476597 SIGLEC1Q9BZZ2 1709 aa17.24■□□□□ 0.35
SEC13-214ENST00000476597 PLPPR3Q6T4P5 718 aa17.22■□□□□ 0.35
SEC13-214ENST00000476597 KIAA1107Q9UPP5 1409 aa17.21■□□□□ 0.35
SEC13-214ENST00000476597 CDC42BPAQ5VT25 1732 aa17.2■□□□□ 0.34
SEC13-214ENST00000476597 SPAG9O60271 1321 aaKnown RBP17.19■□□□□ 0.34
SEC13-214ENST00000476597 DIP2CQ9Y2E4 1556 aa17.18■□□□□ 0.34
SEC13-214ENST00000476597 ZNF644Q9H582 1327 aaPredicted RBP17.18■□□□□ 0.34
SEC13-214ENST00000476597 PLEKHH2Q8IVE3 1493 aa17.18■□□□□ 0.34
SEC13-214ENST00000476597 RIMS1Q86UR5 1692 aaKnown RBP17.17■□□□□ 0.34
SEC13-214ENST00000476597 CEBPAP49715 358 aaPredicted RBP17.17■□□□□ 0.34
SEC13-214ENST00000476597 SAMD9LQ8IVG5 1584 aa17.17■□□□□ 0.34
SEC13-214ENST00000476597 REREQ9P2R6 1566 aa17.16■□□□□ 0.34
SEC13-214ENST00000476597 ITSN2Q9NZM3 1697 aa17.16■□□□□ 0.34
SEC13-214ENST00000476597 EHBP1L1Q8N3D4 1523 aa17.16■□□□□ 0.34
SEC13-214ENST00000476597 VPS8Q8N3P4 1428 aa17.15■□□□□ 0.34
SEC13-214ENST00000476597 LMTK3Q96Q04 1460 aa17.15■□□□□ 0.34
SEC13-214ENST00000476597 AGLP35573 1532 aa17.15■□□□□ 0.34
SEC13-214ENST00000476597 SYCP2Q9BX26 1530 aa17.15■□□□□ 0.34
SEC13-214ENST00000476597 ABCA6Q8N139 1617 aa17.14■□□□□ 0.33
SEC13-214ENST00000476597 HSPA2P54652 639 aa17.13■□□□□ 0.33
SEC13-214ENST00000476597 KIDINS220Q9ULH0 1771 aa17.12■□□□□ 0.33
SEC13-214ENST00000476597 MBD5Q9P267 1494 aa17.12■□□□□ 0.33
SEC13-214ENST00000476597 TIAM1Q13009 1591 aa17.11■□□□□ 0.33
SEC13-214ENST00000476597 ESF1Q9H501 851 aaKnown RBP17.11■□□□□ 0.33
SEC13-214ENST00000476597 ILDR1Q86SU0 546 aaPredicted RBP17.1■□□□□ 0.33
SEC13-214ENST00000476597 NCOA2Q15596 1464 aa17.1■□□□□ 0.33
SEC13-214ENST00000476597 RSPH4AQ5TD94 716 aa17.09■□□□□ 0.33
SEC13-214ENST00000476597 FER1L4A9Z1Z3 1794 aa17.08■□□□□ 0.33
SEC13-214ENST00000476597 KANK4Q5T7N3 995 aaPredicted RBP17.08■□□□□ 0.32
SEC13-214ENST00000476597 LRRC9Q6ZRR7 1453 aa17.07■□□□□ 0.32
SEC13-214ENST00000476597 ATP7AQ04656 1500 aa17.06■□□□□ 0.32
SEC13-214ENST00000476597 A2MP01023 1474 aa17.05■□□□□ 0.32
SEC13-214ENST00000476597 RTEL1-TNFRSF6BF6WH68 1400 aa17.05■□□□□ 0.32
SEC13-214ENST00000476597 MAP3K1Q13233 1512 aa17.05■□□□□ 0.32
SEC13-214ENST00000476597 CNTLNQ9NXG0 1405 aa17.04■□□□□ 0.32
SEC13-214ENST00000476597 PPP6R1Q9UPN7 881 aa17.03■□□□□ 0.32
SEC13-214ENST00000476597 INO80Q9ULG1 1556 aaPredicted RBP17.02■□□□□ 0.32
SEC13-214ENST00000476597 SUPT6HQ7KZ85 1726 aaKnown RBP17.02■□□□□ 0.32
SEC13-214ENST00000476597 GGT6Q6P531 493 aa17.02■□□□□ 0.32
SEC13-214ENST00000476597 ZMYM3Q14202 1370 aa17.02■□□□□ 0.31
SEC13-214ENST00000476597 DHX29Q7Z478 1369 aaKnown RBP17.02■□□□□ 0.31
SEC13-214ENST00000476597 TSPY4P0CV99 314 aa17.01■□□□□ 0.31
SEC13-214ENST00000476597 TSPY10P0CW01 314 aa17.01■□□□□ 0.31
SEC13-214ENST00000476597 CAMSAP2Q08AD1 1489 aa17■□□□□ 0.31
SEC13-214ENST00000476597 UHRF1BP1Q6BDS2 1440 aa17■□□□□ 0.31
SEC13-214ENST00000476597 CCDC141Q6ZP82 1450 aa16.99■□□□□ 0.31
SEC13-214ENST00000476597 APLP2Q06481 763 aa16.99■□□□□ 0.31
SEC13-214ENST00000476597 PLXNC1O60486 1568 aa16.98■□□□□ 0.31
SEC13-214ENST00000476597 MIA2Q96PC5 1412 aa16.96■□□□□ 0.3
SEC13-214ENST00000476597 SETD1BQ9UPS6 1966 aaKnown RBP16.95■□□□□ 0.3
SEC13-214ENST00000476597 KIF3BO15066 747 aa16.95■□□□□ 0.3
SEC13-214ENST00000476597 DMRT2Q9Y5R5 561 aa16.95■□□□□ 0.3
SEC13-214ENST00000476597 FBXO41Q8TF61 875 aa16.94■□□□□ 0.3
SEC13-214ENST00000476597 NPATQ14207 1427 aa16.94■□□□□ 0.3
SEC13-214ENST00000476597 MYOM3Q5VTT5 1437 aa16.94■□□□□ 0.3
SEC13-214ENST00000476597 C3P01024 1663 aa16.94■□□□□ 0.3
SEC13-214ENST00000476597 PREX1Q8TCU6 1659 aa16.94■□□□□ 0.3
SEC13-214ENST00000476597 ARHGEF5Q12774 1597 aa16.93■□□□□ 0.3
SEC13-214ENST00000476597 ADGBQ8N7X0 1667 aa16.91■□□□□ 0.3
SEC13-214ENST00000476597 PTPRKQ15262 1439 aa16.9■□□□□ 0.3
SEC13-214ENST00000476597 MROH2AA6NES4 1674 aa16.88■□□□□ 0.29
SEC13-214ENST00000476597 WASHC2CQ9Y4E1 1318 aa16.88■□□□□ 0.29
SEC13-214ENST00000476597 CERKQ8TCT0 537 aa16.87■□□□□ 0.29
SEC13-214ENST00000476597 CLTCQ00610 1675 aaKnown RBP16.85■□□□□ 0.29
SEC13-214ENST00000476597 FBXO31Q5XUX0 539 aaPredicted RBP16.85■□□□□ 0.29
SEC13-214ENST00000476597 PTPRTO14522 1441 aa16.85■□□□□ 0.29
SEC13-214ENST00000476597 NCOA1Q15788 1441 aa16.83■□□□□ 0.28
SEC13-214ENST00000476597 MAST1Q9Y2H9 1570 aa16.83■□□□□ 0.28
SEC13-214ENST00000476597 STRCQ7RTU9 1775 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms