RNA–Protein interactions for RNA: ENST00000475344.1

LTN1-204, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 3

Gene LTN1, Length 696 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-204ENST00000475344 TMC2Q8TDI7 906 aa13.05□□□□□ -0.32
LTN1-204ENST00000475344 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.04□□□□□ -0.32
LTN1-204ENST00000475344 POTEMA6NI47 508 aa13.02□□□□□ -0.33
LTN1-204ENST00000475344 ZNF710Q8N1W2 664 aa13.01□□□□□ -0.33
LTN1-204ENST00000475344 DOK7Q18PE1 504 aa13□□□□□ -0.33
LTN1-204ENST00000475344 POTEGQ6S5H5 508 aa13□□□□□ -0.33
LTN1-204ENST00000475344 HOXB3P14651 431 aaPredicted RBP12.99□□□□□ -0.33
LTN1-204ENST00000475344 KIF3CO14782 793 aa12.98□□□□□ -0.33
LTN1-204ENST00000475344 CFAP44Q96MT7 982 aa12.98□□□□□ -0.33
LTN1-204ENST00000475344 PAXIP1Q6ZW49 1069 aaPredicted RBP12.96□□□□□ -0.33
LTN1-204ENST00000475344 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
LTN1-204ENST00000475344 MARVELD3Q96A59 401 aa12.96□□□□□ -0.33
LTN1-204ENST00000475344 RIMBP2O15034 1052 aa12.95□□□□□ -0.34
LTN1-204ENST00000475344 GPHNQ9NQX3 736 aaPredicted RBP12.91□□□□□ -0.34
LTN1-204ENST00000475344 EMP3P54852 163 aa12.9□□□□□ -0.34
LTN1-204ENST00000475344 DSG2Q14126 1118 aa12.88□□□□□ -0.35
LTN1-204ENST00000475344 FOXK1P85037 733 aa12.87□□□□□ -0.35
LTN1-204ENST00000475344 PLPP6Q8IY26 295 aa12.87□□□□□ -0.35
LTN1-204ENST00000475344 PDE4AP27815 886 aa12.86□□□□□ -0.35
LTN1-204ENST00000475344 CADPS2Q86UW7 1296 aa12.86□□□□□ -0.35
LTN1-204ENST00000475344 NCKAP5LQ9HCH0 1330 aa12.86□□□□□ -0.35
LTN1-204ENST00000475344 HOXB1P14653 301 aaPredicted RBP12.85□□□□□ -0.35
LTN1-204ENST00000475344 CRISPLD2Q9H0B8 497 aa12.85□□□□□ -0.35
LTN1-204ENST00000475344 ARSIQ5FYB1 569 aa12.84□□□□□ -0.35
LTN1-204ENST00000475344 LARP6Q9BRS8 491 aaKnown RBP12.84□□□□□ -0.35
LTN1-204ENST00000475344 FAM205CA6NFA0 338 aa12.83□□□□□ -0.36
LTN1-204ENST00000475344 KHSRPQ92945 711 aaKnown RBP eCLIP12.83□□□□□ -0.36
LTN1-204ENST00000475344 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
LTN1-204ENST00000475344 PPP1R15BQ5SWA1 713 aa12.81□□□□□ -0.36
LTN1-204ENST00000475344 GPR153Q6NV75 609 aa12.81□□□□□ -0.36
LTN1-204ENST00000475344 DDX27Q96GQ7 796 aaKnown RBP12.79□□□□□ -0.36
LTN1-204ENST00000475344 ERBB3P21860 1342 aa12.79□□□□□ -0.36
LTN1-204ENST00000475344 PCDHGA4Q9Y5G9 962 aa12.78□□□□□ -0.36
LTN1-204ENST00000475344 HS3ST6Q96QI5 342 aa12.77□□□□□ -0.37
LTN1-204ENST00000475344 SLC34A2O95436 690 aa12.76□□□□□ -0.37
LTN1-204ENST00000475344 NUDT7P0C024 238 aa12.76□□□□□ -0.37
LTN1-204ENST00000475344 CDAN1Q8IWY9 1227 aa12.76□□□□□ -0.37
LTN1-204ENST00000475344 UPF1Q92900 1129 aaKnown RBP eCLIP12.76□□□□□ -0.37
LTN1-204ENST00000475344 POTEB3A0JP26 581 aa12.72□□□□□ -0.37
LTN1-204ENST00000475344 VARS2Q5ST30 1063 aaKnown RBP12.72□□□□□ -0.37
LTN1-204ENST00000475344 POTEBQ6S5H4 581 aa12.72□□□□□ -0.37
LTN1-204ENST00000475344 PTCD2Q8WV60 388 aaKnown RBP12.71□□□□□ -0.37
LTN1-204ENST00000475344 MFSD10Q14728 455 aa12.7□□□□□ -0.38
LTN1-204ENST00000475344 TBC1D12O60347 775 aa12.69□□□□□ -0.38
LTN1-204ENST00000475344 PCDH10Q9P2E7 1040 aa12.68□□□□□ -0.38
LTN1-204ENST00000475344 ZNF316A6NFI3 1004 aaPredicted RBP12.66□□□□□ -0.38
LTN1-204ENST00000475344 TSHZ2Q9NRE2 1034 aa12.65□□□□□ -0.38
LTN1-204ENST00000475344 LHX6Q9UPM6 363 aa12.65□□□□□ -0.38
LTN1-204ENST00000475344 OXER1Q8TDS5 423 aa12.64□□□□□ -0.39
LTN1-204ENST00000475344 WDR70Q9NW82 654 aa12.62□□□□□ -0.39
LTN1-204ENST00000475344 MAP3K9P80192 1104 aa12.61□□□□□ -0.39
LTN1-204ENST00000475344 PLCB2Q00722 1185 aa12.6□□□□□ -0.39
LTN1-204ENST00000475344 PLSCR2Q9NRY7 297 aa12.6□□□□□ -0.39
LTN1-204ENST00000475344 EMILIN3Q9NT22 766 aa12.6□□□□□ -0.39
LTN1-204ENST00000475344 ZNF687Q8N1G0 1237 aa12.56□□□□□ -0.4
LTN1-204ENST00000475344 KDM4FA0A1W2PPD8 638 aa12.55□□□□□ -0.4
LTN1-204ENST00000475344 EVI5O60447 810 aa12.55□□□□□ -0.4
LTN1-204ENST00000475344 KRTAP3-3Q9BYR6 98 aa12.54□□□□□ -0.4
LTN1-204ENST00000475344 KRTAP3-2Q9BYR7 98 aa12.54□□□□□ -0.4
LTN1-204ENST00000475344 CAMK2BQ13554 666 aa12.53□□□□□ -0.4
LTN1-204ENST00000475344 DPYSL4O14531 572 aa12.52□□□□□ -0.41
LTN1-204ENST00000475344 HAP1P54257 671 aaPredicted RBP12.51□□□□□ -0.41
LTN1-204ENST00000475344 E2F4Q16254 413 aa12.51□□□□□ -0.41
LTN1-204ENST00000475344 PSDA5PKW4 1024 aaPredicted RBP12.5□□□□□ -0.41
LTN1-204ENST00000475344 PPP4R3BQ5MIZ7 849 aa12.49□□□□□ -0.41
LTN1-204ENST00000475344 ZNF454Q8N9F8 522 aa12.49□□□□□ -0.41
LTN1-204ENST00000475344 AXIN2Q9Y2T1 843 aa12.48□□□□□ -0.41
LTN1-204ENST00000475344 ANKRD13DQ6ZTN6 518 aa12.44□□□□□ -0.42
LTN1-204ENST00000475344 ANO8Q9HCE9 1232 aaPredicted RBP12.44□□□□□ -0.42
LTN1-204ENST00000475344 POTEEQ6S8J3 1075 aa12.43□□□□□ -0.42
LTN1-204ENST00000475344 SPNS2Q8IVW8 549 aa12.41□□□□□ -0.42
LTN1-204ENST00000475344 PBX2P40425 430 aa12.4□□□□□ -0.42
LTN1-204ENST00000475344 PSEN2P49810 448 aa12.4□□□□□ -0.42
LTN1-204ENST00000475344 FOSBP53539 338 aa12.4□□□□□ -0.42
LTN1-204ENST00000475344 ARHGAP33O14559 1287 aa12.39□□□□□ -0.43
LTN1-204ENST00000475344 JPH4Q96JJ6 628 aa12.39□□□□□ -0.43
LTN1-204ENST00000475344 KCNK17Q96T54 332 aa12.39□□□□□ -0.43
LTN1-204ENST00000475344 LSM11P83369 360 aaKnown RBP eCLIP12.38□□□□□ -0.43
LTN1-204ENST00000475344 DDX12PQ92771 950 aa12.38□□□□□ -0.43
LTN1-204ENST00000475344 KCNH8Q96L42 1107 aa12.38□□□□□ -0.43
LTN1-204ENST00000475344 ZDHHC16Q969W1 377 aa12.37□□□□□ -0.43
LTN1-204ENST00000475344 PDIA6Q15084 440 aa12.35□□□□□ -0.43
LTN1-204ENST00000475344 PCDHGA10Q9Y5H3 936 aa12.35□□□□□ -0.43
LTN1-204ENST00000475344 DMRTA1Q5VZB9 504 aa12.34□□□□□ -0.43
LTN1-204ENST00000475344 KCNV2Q8TDN2 545 aa12.34□□□□□ -0.43
LTN1-204ENST00000475344 ADAM33Q9BZ11 813 aa12.34□□□□□ -0.43
LTN1-204ENST00000475344 SPDYE16A6NNV3 312 aaPredicted RBP12.33□□□□□ -0.44
LTN1-204ENST00000475344 PHF14O94880 888 aa12.33□□□□□ -0.44
LTN1-204ENST00000475344 BCL2L12Q9HB09 334 aa12.33□□□□□ -0.44
LTN1-204ENST00000475344 PTPREP23469 700 aa12.32□□□□□ -0.44
LTN1-204ENST00000475344 MMRN1Q13201 1228 aa12.32□□□□□ -0.44
LTN1-204ENST00000475344 TYW1BQ6NUM6 668 aa12.31□□□□□ -0.44
LTN1-204ENST00000475344 GRXCR2A6NFK2 248 aa12.3□□□□□ -0.44
LTN1-204ENST00000475344 NBR1Q14596 966 aa12.3□□□□□ -0.44
LTN1-204ENST00000475344 RBM33Q96EV2 1170 aaKnown RBP12.3□□□□□ -0.44
LTN1-204ENST00000475344 ARIH1Q9Y4X5 557 aaPredicted RBP12.3□□□□□ -0.44
LTN1-204ENST00000475344 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
LTN1-204ENST00000475344 ADGRD1Q6QNK2 874 aa12.28□□□□□ -0.44
LTN1-204ENST00000475344 EPAS1Q99814 870 aa12.28□□□□□ -0.44
LTN1-204ENST00000475344 PTGER2P43116 358 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms