RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 ST18O60284 1047 aa14.32□□□□□ -0.12
PRPF40A-206ENST00000471167 CADPS2Q86UW7 1296 aa14.32□□□□□ -0.12
PRPF40A-206ENST00000471167 NCKAP5LQ9HCH0 1330 aa14.28□□□□□ -0.12
PRPF40A-206ENST00000471167 SPRYD3Q8NCJ5 442 aa14.26□□□□□ -0.13
PRPF40A-206ENST00000471167 CRISPLD2Q9H0B8 497 aa14.26□□□□□ -0.13
PRPF40A-206ENST00000471167 PAXIP1Q6ZW49 1069 aaPredicted RBP14.25□□□□□ -0.13
PRPF40A-206ENST00000471167 GPHNQ9NQX3 736 aaPredicted RBP14.24□□□□□ -0.13
PRPF40A-206ENST00000471167 SNPHO15079 494 aa14.22□□□□□ -0.13
PRPF40A-206ENST00000471167 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.22□□□□□ -0.13
PRPF40A-206ENST00000471167 DSG2Q14126 1118 aa14.21□□□□□ -0.13
PRPF40A-206ENST00000471167 CFAP44Q96MT7 982 aa14.21□□□□□ -0.13
PRPF40A-206ENST00000471167 TMC2Q8TDI7 906 aa14.2□□□□□ -0.14
PRPF40A-206ENST00000471167 FOXK1P85037 733 aa14.19□□□□□ -0.14
PRPF40A-206ENST00000471167 POTEMA6NI47 508 aa14.16□□□□□ -0.14
PRPF40A-206ENST00000471167 POTEGQ6S5H5 508 aa14.16□□□□□ -0.14
PRPF40A-206ENST00000471167 GPR153Q6NV75 609 aa14.15□□□□□ -0.14
PRPF40A-206ENST00000471167 MARVELD3Q96A59 401 aa14.15□□□□□ -0.14
PRPF40A-206ENST00000471167 DOK7Q18PE1 504 aa14.14□□□□□ -0.15
PRPF40A-206ENST00000471167 PLPP6Q8IY26 295 aa14.14□□□□□ -0.15
PRPF40A-206ENST00000471167 KHSRPQ92945 711 aaKnown RBP eCLIP14.13□□□□□ -0.15
PRPF40A-206ENST00000471167 POTEB3A0JP26 581 aa14.12□□□□□ -0.15
PRPF40A-206ENST00000471167 POTEBQ6S5H4 581 aa14.12□□□□□ -0.15
PRPF40A-206ENST00000471167 MFSD10Q14728 455 aa14.11□□□□□ -0.15
PRPF40A-206ENST00000471167 SLC34A2O95436 690 aa14.1□□□□□ -0.15
PRPF40A-206ENST00000471167 HOXB1P14653 301 aaPredicted RBP14.1□□□□□ -0.15
PRPF40A-206ENST00000471167 LARP6Q9BRS8 491 aaKnown RBP14.1□□□□□ -0.15
PRPF40A-206ENST00000471167 PDE4AP27815 886 aa14.09□□□□□ -0.15
PRPF40A-206ENST00000471167 ARSIQ5FYB1 569 aa14.08□□□□□ -0.16
PRPF40A-206ENST00000471167 PPP1R15BQ5SWA1 713 aa14.07□□□□□ -0.16
PRPF40A-206ENST00000471167 TSHZ2Q9NRE2 1034 aa14.07□□□□□ -0.16
PRPF40A-206ENST00000471167 ZNF710Q8N1W2 664 aa14.06□□□□□ -0.16
PRPF40A-206ENST00000471167 ZSWIM6Q9HCJ5 1215 aa14.05□□□□□ -0.16
PRPF40A-206ENST00000471167 KDM4FA0A1W2PPD8 638 aa14.04□□□□□ -0.16
PRPF40A-206ENST00000471167 PTCD2Q8WV60 388 aaKnown RBP14.03□□□□□ -0.16
PRPF40A-206ENST00000471167 PCDHGA4Q9Y5G9 962 aa14.03□□□□□ -0.16
PRPF40A-206ENST00000471167 DDX27Q96GQ7 796 aaKnown RBP14.01□□□□□ -0.17
PRPF40A-206ENST00000471167 PLCB2Q00722 1185 aa14□□□□□ -0.17
PRPF40A-206ENST00000471167 RIMBP2O15034 1052 aa13.99□□□□□ -0.17
PRPF40A-206ENST00000471167 EMP3P54852 163 aa13.99□□□□□ -0.17
PRPF40A-206ENST00000471167 OXER1Q8TDS5 423 aa13.99□□□□□ -0.17
PRPF40A-206ENST00000471167 EMILIN3Q9NT22 766 aa13.98□□□□□ -0.17
PRPF40A-206ENST00000471167 FAM205CA6NFA0 338 aa13.96□□□□□ -0.17
PRPF40A-206ENST00000471167 NUDT7P0C024 238 aa13.96□□□□□ -0.17
PRPF40A-206ENST00000471167 HS3ST6Q96QI5 342 aa13.95□□□□□ -0.18
PRPF40A-206ENST00000471167 CAMK2BQ13554 666 aa13.93□□□□□ -0.18
PRPF40A-206ENST00000471167 UPF1Q92900 1129 aaKnown RBP eCLIP13.93□□□□□ -0.18
PRPF40A-206ENST00000471167 CDAN1Q8IWY9 1227 aa13.9□□□□□ -0.18
PRPF40A-206ENST00000471167 LHX6Q9UPM6 363 aa13.88□□□□□ -0.19
PRPF40A-206ENST00000471167 ERBB3P21860 1342 aa13.88□□□□□ -0.19
PRPF40A-206ENST00000471167 ZNF316A6NFI3 1004 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-206ENST00000471167 VARS2Q5ST30 1063 aaKnown RBP13.86□□□□□ -0.19
PRPF40A-206ENST00000471167 KRTAP3-3Q9BYR6 98 aa13.83□□□□□ -0.2
PRPF40A-206ENST00000471167 KRTAP3-2Q9BYR7 98 aa13.83□□□□□ -0.2
PRPF40A-206ENST00000471167 POTEEQ6S8J3 1075 aa13.81□□□□□ -0.2
PRPF40A-206ENST00000471167 ANO8Q9HCE9 1232 aaPredicted RBP13.81□□□□□ -0.2
PRPF40A-206ENST00000471167 PCDH10Q9P2E7 1040 aa13.79□□□□□ -0.2
PRPF40A-206ENST00000471167 DPYSL4O14531 572 aa13.78□□□□□ -0.2
PRPF40A-206ENST00000471167 TBC1D12O60347 775 aa13.78□□□□□ -0.2
PRPF40A-206ENST00000471167 EVI5O60447 810 aa13.77□□□□□ -0.21
PRPF40A-206ENST00000471167 ZNF687Q8N1G0 1237 aa13.77□□□□□ -0.21
PRPF40A-206ENST00000471167 E2F4Q16254 413 aa13.76□□□□□ -0.21
PRPF40A-206ENST00000471167 MAP3K9P80192 1104 aa13.75□□□□□ -0.21
PRPF40A-206ENST00000471167 KDM2AQ9Y2K7 1162 aa13.75□□□□□ -0.21
PRPF40A-206ENST00000471167 HAP1P54257 671 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-206ENST00000471167 ARIH1Q9Y4X5 557 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-206ENST00000471167 WDR70Q9NW82 654 aa13.71□□□□□ -0.21
PRPF40A-206ENST00000471167 FOSBP53539 338 aa13.68□□□□□ -0.22
PRPF40A-206ENST00000471167 KCNV2Q8TDN2 545 aa13.67□□□□□ -0.22
PRPF40A-206ENST00000471167 AXIN2Q9Y2T1 843 aa13.66□□□□□ -0.22
PRPF40A-206ENST00000471167 PDIA6Q15084 440 aa13.64□□□□□ -0.23
PRPF40A-206ENST00000471167 ZNF454Q8N9F8 522 aa13.63□□□□□ -0.23
PRPF40A-206ENST00000471167 PCDHGA10Q9Y5H3 936 aa13.63□□□□□ -0.23
PRPF40A-206ENST00000471167 JPH4Q96JJ6 628 aa13.62□□□□□ -0.23
PRPF40A-206ENST00000471167 PSDA5PKW4 1024 aaPredicted RBP13.61□□□□□ -0.23
PRPF40A-206ENST00000471167 PTGER2P43116 358 aa13.61□□□□□ -0.23
PRPF40A-206ENST00000471167 PSEN2P49810 448 aa13.59□□□□□ -0.23
PRPF40A-206ENST00000471167 PPP4R3BQ5MIZ7 849 aa13.59□□□□□ -0.23
PRPF40A-206ENST00000471167 SPNS2Q8IVW8 549 aa13.59□□□□□ -0.23
PRPF40A-206ENST00000471167 ADAM33Q9BZ11 813 aa13.59□□□□□ -0.23
PRPF40A-206ENST00000471167 PRIM1P49642 420 aaKnown RBP13.58□□□□□ -0.24
PRPF40A-206ENST00000471167 DMRTA1Q5VZB9 504 aa13.58□□□□□ -0.24
PRPF40A-206ENST00000471167 DDX12PQ92771 950 aa13.57□□□□□ -0.24
PRPF40A-206ENST00000471167 ARHGEF1Q92888 912 aaKnown RBP13.56□□□□□ -0.24
PRPF40A-206ENST00000471167 SPDYE16A6NNV3 312 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-206ENST00000471167 BCL2L12Q9HB09 334 aa13.55□□□□□ -0.24
PRPF40A-206ENST00000471167 ARHGAP33O14559 1287 aa13.54□□□□□ -0.24
PRPF40A-206ENST00000471167 PHF14O94880 888 aa13.54□□□□□ -0.24
PRPF40A-206ENST00000471167 PBX2P40425 430 aa13.54□□□□□ -0.24
PRPF40A-206ENST00000471167 ZDHHC16Q969W1 377 aa13.54□□□□□ -0.24
PRPF40A-206ENST00000471167 LSM11P83369 360 aaKnown RBP eCLIP13.53□□□□□ -0.24
PRPF40A-206ENST00000471167 VSIG10Q8N0Z9 540 aa13.51□□□□□ -0.25
PRPF40A-206ENST00000471167 ANKRD13DQ6ZTN6 518 aa13.49□□□□□ -0.25
PRPF40A-206ENST00000471167 KCNK17Q96T54 332 aa13.49□□□□□ -0.25
PRPF40A-206ENST00000471167 PLSCR2Q9NRY7 297 aa13.49□□□□□ -0.25
PRPF40A-206ENST00000471167 MLLT3P42568 568 aaPredicted RBP13.48□□□□□ -0.25
PRPF40A-206ENST00000471167 TYW1BQ6NUM6 668 aa13.48□□□□□ -0.25
PRPF40A-206ENST00000471167 COL9A1P20849 921 aa13.47□□□□□ -0.25
PRPF40A-206ENST00000471167 OSBPP22059 807 aa13.46□□□□□ -0.25
PRPF40A-206ENST00000471167 MMRN1Q13201 1228 aa13.45□□□□□ -0.26
PRPF40A-206ENST00000471167 EPAS1Q99814 870 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms