RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 PREX2Q70Z35 1606 aa26.84■■□□□ 1.89
SMC4-211ENST00000469858 NAIPQ13075 1403 aa26.84■■□□□ 1.89
SMC4-211ENST00000469858 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.84■■□□□ 1.891e-7■■■□□ 17.3
SMC4-211ENST00000469858 CDC42BPBQ9Y5S2 1711 aa26.83■■□□□ 1.88
SMC4-211ENST00000469858 ABCC5O15440 1437 aa26.82■■□□□ 1.88
SMC4-211ENST00000469858 GCC2Q8IWJ2 1684 aa26.82■■□□□ 1.88
SMC4-211ENST00000469858 CLSPNQ9HAW4 1339 aa26.8■■□□□ 1.88
SMC4-211ENST00000469858 KCNH8Q96L42 1107 aa26.8■■□□□ 1.88
SMC4-211ENST00000469858 RRP7BPQ9NSQ0 103 aa26.79■■□□□ 1.88
SMC4-211ENST00000469858 AKNAQ7Z591 1439 aa26.79■■□□□ 1.88
SMC4-211ENST00000469858 MYO5CQ9NQX4 1742 aa26.79■■□□□ 1.88
SMC4-211ENST00000469858 CROCC2H7BZ55 1655 aa26.77■■□□□ 1.88
SMC4-211ENST00000469858 SAMD9LQ8IVG5 1584 aa26.73■■□□□ 1.87
SMC4-211ENST00000469858 ARHGAP5Q13017 1502 aa26.73■■□□□ 1.87
SMC4-211ENST00000469858 WDR7Q9Y4E6 1490 aa26.72■■□□□ 1.87
SMC4-211ENST00000469858 ADGBQ8N7X0 1667 aa26.72■■□□□ 1.87
SMC4-211ENST00000469858 ROCK1Q13464 1354 aa26.72■■□□□ 1.87
SMC4-211ENST00000469858 MAPKBP1O60336 1514 aa26.71■■□□□ 1.87
SMC4-211ENST00000469858 KDM6BO15054 1643 aa26.68■■□□□ 1.86
SMC4-211ENST00000469858 ASXL2Q76L83 1435 aa26.66■■□□□ 1.86
SMC4-211ENST00000469858 ARHGEF5Q12774 1597 aa26.65■■□□□ 1.86
SMC4-211ENST00000469858 NPM1P06748 294 aaKnown RBP eCLIP26.64■■□□□ 1.86
SMC4-211ENST00000469858 HNRNPMP52272 730 aaKnown RBP eCLIP26.63■■□□□ 1.852e-9■□□□□ 8.7
SMC4-211ENST00000469858 ADGRL2O95490 1459 aa26.63■■□□□ 1.85
SMC4-211ENST00000469858 PLCH2O75038 1416 aa26.63■■□□□ 1.85
SMC4-211ENST00000469858 MBD5Q9P267 1494 aa26.62■■□□□ 1.85
SMC4-211ENST00000469858 SHANK2Q9UPX8 1470 aa26.62■■□□□ 1.85
SMC4-211ENST00000469858 RIMBP3CA6NJZ7 1639 aa26.62■■□□□ 1.85
SMC4-211ENST00000469858 RIMBP3BA6NNM3 1639 aa26.62■■□□□ 1.85
SMC4-211ENST00000469858 RIMBP3Q9UFD9 1639 aa26.62■■□□□ 1.85
SMC4-211ENST00000469858 SYCP2Q9BX26 1530 aa26.61■■□□□ 1.85
SMC4-211ENST00000469858 NCOA1Q15788 1441 aa26.6■■□□□ 1.85
SMC4-211ENST00000469858 C9orf84Q5VXU9 1444 aa26.6■■□□□ 1.85
SMC4-211ENST00000469858 CCDC141Q6ZP82 1450 aa26.59■■□□□ 1.85
SMC4-211ENST00000469858 ABCA9Q8IUA7 1624 aa26.58■■□□□ 1.85
SMC4-211ENST00000469858 ANKRD30AQ9BXX3 1397 aa26.58■■□□□ 1.85
SMC4-211ENST00000469858 PLEKHH2Q8IVE3 1493 aa26.56■■□□□ 1.84
SMC4-211ENST00000469858 TSPY4P0CV99 314 aa26.56■■□□□ 1.84
SMC4-211ENST00000469858 TSPY10P0CW01 314 aa26.56■■□□□ 1.84
SMC4-211ENST00000469858 EFCAB2Q5VUJ9 269 aa26.54■■□□□ 1.84
SMC4-211ENST00000469858 TRIM52Q96A61 297 aa26.54■■□□□ 1.84
SMC4-211ENST00000469858 ARAP3Q8WWN8 1544 aa26.54■■□□□ 1.84
SMC4-211ENST00000469858 KIAA1107Q9UPP5 1409 aa26.53■■□□□ 1.84
SMC4-211ENST00000469858 RSPH4AQ5TD94 716 aa26.52■■□□□ 1.84
SMC4-211ENST00000469858 CYB5RLQ6IPT4 315 aa26.51■■□□□ 1.83
SMC4-211ENST00000469858 ABCC1P33527 1531 aa26.51■■□□□ 1.83
SMC4-211ENST00000469858 ARHGEF12Q9NZN5 1544 aa26.49■■□□□ 1.83
SMC4-211ENST00000469858 MAST1Q9Y2H9 1570 aa26.47■■□□□ 1.83
SMC4-211ENST00000469858 ACIN1Q9UKV3 1341 aaKnown RBP26.46■■□□□ 1.83
SMC4-211ENST00000469858 SIN3AQ96ST3 1273 aa26.46■■□□□ 1.83
SMC4-211ENST00000469858 ANKRD50Q9ULJ7 1429 aa26.45■■□□□ 1.83
SMC4-211ENST00000469858 FANCAO15360 1455 aa26.45■■□□□ 1.82
SMC4-211ENST00000469858 KIF15Q9NS87 1388 aa26.44■■□□□ 1.82
SMC4-211ENST00000469858 NEUROD1Q13562 356 aa26.42■■□□□ 1.82
SMC4-211ENST00000469858 DENND4BO75064 1496 aaPredicted RBP26.42■■□□□ 1.82
SMC4-211ENST00000469858 MPHOSPH9Q99550 1183 aa26.4■■□□□ 1.82
SMC4-211ENST00000469858 TRAPPC8Q9Y2L5 1435 aa26.39■■□□□ 1.82
SMC4-211ENST00000469858 PLXNC1O60486 1568 aa26.38■■□□□ 1.81
SMC4-211ENST00000469858 CD109Q6YHK3 1445 aa26.35■■□□□ 1.81
SMC4-211ENST00000469858 ADGRL1O94910 1474 aa26.33■■□□□ 1.81
SMC4-211ENST00000469858 PZPP20742 1482 aa26.33■■□□□ 1.81
SMC4-211ENST00000469858 SLC4A1APQ9BWU0 796 aaKnown RBP26.32■■□□□ 1.8
SMC4-211ENST00000469858 CFAP74Q9C0B2 1584 aa26.3■■□□□ 1.8
SMC4-211ENST00000469858 SCAPERQ9BY12 1400 aa26.29■■□□□ 1.8
SMC4-211ENST00000469858 FOXD1Q16676 465 aa26.29■■□□□ 1.8
SMC4-211ENST00000469858 AFAP1Q8N556 730 aa26.29■■□□□ 1.8
SMC4-211ENST00000469858 SPAG9O60271 1321 aaKnown RBP26.27■■□□□ 1.8
SMC4-211ENST00000469858 ZFYVE16Q7Z3T8 1539 aa26.27■■□□□ 1.8
SMC4-211ENST00000469858 TIMELESSQ9UNS1 1208 aa26.27■■□□□ 1.8
SMC4-211ENST00000469858 DUOX2Q9NRD8 1548 aa26.26■■□□□ 1.79
SMC4-211ENST00000469858 NUP155O75694 1391 aa26.25■■□□□ 1.79
SMC4-211ENST00000469858 KDM5DQ9BY66 1539 aa26.25■■□□□ 1.79
SMC4-211ENST00000469858 TONSLQ96HA7 1378 aa26.24■■□□□ 1.79
SMC4-211ENST00000469858 RTEL1-TNFRSF6BF6WH68 1400 aa26.24■■□□□ 1.79
SMC4-211ENST00000469858 INO80Q9ULG1 1556 aaPredicted RBP26.23■■□□□ 1.79
SMC4-211ENST00000469858 ZNF316A6NFI3 1004 aaPredicted RBP26.22■■□□□ 1.79
SMC4-211ENST00000469858 MAP3K4Q9Y6R4 1608 aa26.22■■□□□ 1.79
SMC4-211ENST00000469858 ATP7AQ04656 1500 aa26.22■■□□□ 1.79
SMC4-211ENST00000469858 UNC13BO14795 1591 aa26.2■■□□□ 1.79
SMC4-211ENST00000469858 ANKRD30BQ9BXX2 1392 aa26.2■■□□□ 1.78
SMC4-211ENST00000469858 ERBINQ96RT1 1412 aa26.19■■□□□ 1.78
SMC4-211ENST00000469858 GLI2P10070 1586 aa26.19■■□□□ 1.78
SMC4-211ENST00000469858 PKD2Q13563 968 aa26.17■■□□□ 1.78
SMC4-211ENST00000469858 DIP2BQ9P265 1576 aa26.17■■□□□ 1.78
SMC4-211ENST00000469858 ZNF518AQ6AHZ1 1483 aa26.17■■□□□ 1.78
SMC4-211ENST00000469858 MYT1LQ9UL68 1186 aa26.15■■□□□ 1.78
SMC4-211ENST00000469858 NEO1Q92859 1461 aa26.15■■□□□ 1.78
SMC4-211ENST00000469858 FAM135AQ9P2D6 1515 aa26.14■■□□□ 1.78
SMC4-211ENST00000469858 PPP1R15AO75807 674 aaPredicted RBP26.13■■□□□ 1.77
SMC4-211ENST00000469858 POGZQ7Z3K3 1410 aa26.13■■□□□ 1.77
SMC4-211ENST00000469858 KIDINS220Q9ULH0 1771 aa26.12■■□□□ 1.77
SMC4-211ENST00000469858 RPRD2Q5VT52 1461 aaKnown RBP26.11■■□□□ 1.77
SMC4-211ENST00000469858 KDM5CP41229 1560 aa26.1■■□□□ 1.77
SMC4-211ENST00000469858 IQGAP3Q86VI3 1631 aa26.1■■□□□ 1.77
SMC4-211ENST00000469858 FAM69CQ0P6D2 419 aa26.1■■□□□ 1.77
SMC4-211ENST00000469858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.1■■□□□ 1.772e-7■■■■■ 28
SMC4-211ENST00000469858 MAGI2Q86UL8 1455 aa26.09■■□□□ 1.77
SMC4-211ENST00000469858 TSPOAP1O95153 1857 aa26.06■■□□□ 1.76
SMC4-211ENST00000469858 HECW2Q9P2P5 1572 aa26.06■■□□□ 1.76
SMC4-211ENST00000469858 DEPDC5O75140 1603 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms