RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.31■□□□□ 0.681e-147■■■■■ 345.5
SMC4-211ENST00000469858 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.26■□□□□ 0.992e-144■■■■■ 553.7
SMC4-211ENST00000469858 YWHAGP61981 247 aaKnown RBP eCLIP18.84■□□□□ 0.611e-117■■■■■ 400.8
SMC4-211ENST00000469858 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.75■□□□□ 0.434e-98■■■■■ 943.1
SMC4-211ENST00000469858 LSM11P83369 360 aaKnown RBP eCLIP16.76■□□□□ 0.277e-97■■■■■ 245.7
SMC4-211ENST00000469858 AGGF1Q8N302 714 aaeCLIP18.58■□□□□ 0.562e-85■■■■■ 286.7
SMC4-211ENST00000469858 DDX3XO00571 662 aaKnown RBP eCLIP19.55■□□□□ 0.724e-78■■■■■ 527.9
SMC4-211ENST00000469858 RBM15Q96T37 977 aaKnown RBP eCLIP18.72■□□□□ 0.595e-67■■■■■ 212.6
SMC4-211ENST00000469858 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.25■■□□□ 1.476e-65■■■■■ 143.5
SMC4-211ENST00000469858 RPS3P23396 243 aaKnown RBP eCLIP17.98■□□□□ 0.477e-64■■■■■ 337.8
SMC4-211ENST00000469858 AARSP49588 968 aaKnown RBP eCLIP19.11■□□□□ 0.653e-49■■■■■ 252.4
SMC4-211ENST00000469858 GTF2F1P35269 517 aaKnown RBP eCLIP19.52■□□□□ 0.728e-49■■■■■ 172.1
SMC4-211ENST00000469858 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.14■□□□□ 0.655e-47■■■■■ 274.1
SMC4-211ENST00000469858 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.45■□□□□ 0.77e-44■■■■■ 137.4
SMC4-211ENST00000469858 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.34■□□□□ 0.212e-41■■■■■ 207.1
SMC4-211ENST00000469858 G3BP1Q13283 466 aaKnown RBP eCLIP22.33■■□□□ 1.171e-39■■■■■ 140
SMC4-211ENST00000469858 HLTFQ14527 1009 aaKnown RBP eCLIP18.99■□□□□ 0.635e-35■■■■■ 127.1
SMC4-211ENST00000469858 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.88■□□□□ 0.934e-34■■■■■ 131.8
SMC4-211ENST00000469858 DDX21Q9NR30 783 aaKnown RBP eCLIP22.79■■□□□ 1.241e-26■■■■■ 198.7
SMC4-211ENST00000469858 TAF15Q92804 592 aaKnown RBP eCLIP14.56□□□□□ -0.087e-26■■■■□ 25.9
SMC4-211ENST00000469858 AKAP1Q92667 903 aaKnown RBP eCLIP15.73■□□□□ 0.114e-24■■■■■ 140.6
SMC4-211ENST00000469858 RBM22Q9NW64 420 aaKnown RBP eCLIP18.51■□□□□ 0.555e-24■■■■■ 66.5
SMC4-211ENST00000469858 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.97■□□□□ 0.634e-23■■■■■ 72.8
SMC4-211ENST00000469858 HNRNPUQ00839 825 aaKnown RBP eCLIP24.6■■□□□ 1.532e-22■■■■■ 68.1
SMC4-211ENST00000469858 WDR43Q15061 677 aaKnown RBP eCLIP24.29■■□□□ 1.485e-20■■■■■ 85.2
SMC4-211ENST00000469858 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.97■□□□□ 0.633e-18■■■■■ 78.4
SMC4-211ENST00000469858 LARP4Q71RC2 724 aaKnown RBP eCLIP17.73■□□□□ 0.431e-17■■■■□ 24.2
SMC4-211ENST00000469858 NCBP2P52298 156 aaKnown RBP eCLIP17.15■□□□□ 0.342e-17■■■■■ 76.5
SMC4-211ENST00000469858 RPS11P62280 158 aaKnown RBP eCLIP16.09■□□□□ 0.178e-17■■■■■ 578.9
SMC4-211ENST00000469858 SSBP05455 408 aaKnown RBP eCLIP20.29■□□□□ 0.849e-17■■■■■ 55.5
SMC4-211ENST00000469858 EIF3DO15371 548 aaKnown RBP eCLIP20.01■□□□□ 0.792e-16■■■■■ 56.2
SMC4-211ENST00000469858 SMNDC1O75940 238 aaKnown RBP eCLIP16.81■□□□□ 0.282e-16■■■■■ 67.6
SMC4-211ENST00000469858 NOLC1Q14978 699 aaKnown RBP eCLIP20.01■□□□□ 0.794e-16■■■■■ 30.2
SMC4-211ENST00000469858 HNRNPLP14866 589 aaKnown RBP eCLIP17.92■□□□□ 0.462e-15■■■■■ 47.4
SMC4-211ENST00000469858 GRSF1Q12849 480 aaKnown RBP eCLIP17.81■□□□□ 0.442e-14■■■■■ 48.8
SMC4-211ENST00000469858 ILF3Q12906 894 aaKnown RBP eCLIP17.46■□□□□ 0.398e-14■■■■■ 40.3
SMC4-211ENST00000469858 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.2■□□□□ 0.341e-13■■■■■ 65.9
SMC4-211ENST00000469858 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.06■□□□□ 0.482e-13■■■■■ 56.3
SMC4-211ENST00000469858 GPKOWQ92917 476 aaPredicted RBP eCLIP20.9■□□□□ 0.942e-13■□□□□ 9.3
SMC4-211ENST00000469858 HNRNPKP61978 463 aaKnown RBP eCLIP17.28■□□□□ 0.365e-13■■■■■ 46
SMC4-211ENST00000469858 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.43■□□□□ 0.385e-13■■■■■ 220.5
SMC4-211ENST00000469858 EIF3GO75821 320 aaKnown RBP eCLIP14.42□□□□□ -0.18e-13■■■■■ 59.2
SMC4-211ENST00000469858 TROVE2P10155 538 aaKnown RBP eCLIP18.08■□□□□ 0.491e-12■■■■■ 61.2
SMC4-211ENST00000469858 PCBP1Q15365 356 aaKnown RBP eCLIP19.48■□□□□ 0.713e-12■■■■□ 20.8
SMC4-211ENST00000469858 ZC3H11AO75152 810 aaKnown RBP eCLIP19.56■□□□□ 0.724e-12■■■■■ 110
SMC4-211ENST00000469858 U2AF1Q01081 240 aaKnown RBP eCLIP24■■□□□ 1.435e-12■■■■■ 47.2
SMC4-211ENST00000469858 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.18■□□□□ 0.187e-12■■■■■ 38.5
SMC4-211ENST00000469858 UPF1Q92900 1129 aaKnown RBP eCLIP21.21■□□□□ 0.991e-11■■■■□ 26.2
SMC4-211ENST00000469858 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.99■□□□□ 0.791e-10■■■□□ 18.8
SMC4-211ENST00000469858 FXR2P51116 673 aaKnown RBP eCLIP20.48■□□□□ 0.872e-10■■■■■ 37.2
SMC4-211ENST00000469858 HNRNPMP52272 730 aaKnown RBP eCLIP26.63■■□□□ 1.852e-9■□□□□ 8.7
SMC4-211ENST00000469858 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.21■□□□□ 0.672e-9■■■■■ 123.9
SMC4-211ENST00000469858 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.23■■□□□ 1.953e-9■■■■■ 72.1
SMC4-211ENST00000469858 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.75■□□□□ 0.274e-9■■■■■ 118.1
SMC4-211ENST00000469858 SND1Q7KZF4 910 aaKnown RBP eCLIP18.98■□□□□ 0.636e-9■■■■■ 32.8
SMC4-211ENST00000469858 PABPC4Q13310 644 aaKnown RBP eCLIP20.24■□□□□ 0.838e-9■■■■■ 603.5
SMC4-211ENST00000469858 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.94■□□□□ 0.781e-8■■■■■ 54.3
SMC4-211ENST00000469858 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.93■□□□□ 0.621e-8■■■■■ 268.2
SMC4-211ENST00000469858 NONOQ15233 471 aaKnown RBP eCLIP20.68■□□□□ 0.92e-8■■■■■ 98.1
SMC4-211ENST00000469858 AQRO60306 1485 aaKnown RBP eCLIP28.58■■■□□ 2.172e-8■■■■■ 71.8
SMC4-211ENST00000469858 RBFOX2O43251 390 aaKnown RBP eCLIP14.83□□□□□ -0.043e-8■■■■■ 54.1
SMC4-211ENST00000469858 AATFQ9NY61 560 aaKnown RBP eCLIP21.45■■□□□ 1.024e-8■■■■■ 116
SMC4-211ENST00000469858 SF3B4Q15427 424 aaKnown RBP eCLIP15.76■□□□□ 0.115e-8■■■■□ 22.8
SMC4-211ENST00000469858 NIPBLQ6KC79 2804 aaeCLIP13.41□□□□□ -0.265e-8■■■■■ 34
SMC4-211ENST00000469858 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.76■■□□□ 1.075e-8■■■□□ 16.4
SMC4-211ENST00000469858 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.92■■□□□ 1.16e-8■■■■□ 23.9
SMC4-211ENST00000469858 ZNF622Q969S3 477 aaKnown RBP eCLIP21.52■■□□□ 1.047e-8■■□□□ 12
SMC4-211ENST00000469858 MATR3P43243 847 aaKnown RBP eCLIP19.73■□□□□ 0.757e-8■■□□□ 11.8
SMC4-211ENST00000469858 SRSF1Q07955 248 aaKnown RBP eCLIP14.84□□□□□ -0.039e-8■■□□□ 13.7
SMC4-211ENST00000469858 EFTUD2Q15029 972 aaKnown RBP eCLIP18.54■□□□□ 0.561e-7■■□□□ 13.4
SMC4-211ENST00000469858 SF3B1O75533 1304 aaKnown RBP eCLIP18.93■□□□□ 0.621e-7■■■■■ 165.2
SMC4-211ENST00000469858 KHSRPQ92945 711 aaKnown RBP eCLIP19.04■□□□□ 0.641e-7■■■■■ 32.8
SMC4-211ENST00000469858 NIP7Q9Y221 180 aaKnown RBP eCLIP22.18■■□□□ 1.141e-7■■■■■ 83.2
SMC4-211ENST00000469858 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.84■■□□□ 1.891e-7■■■□□ 17.3
SMC4-211ENST00000469858 PPIGQ13427 754 aaKnown RBP eCLIP18.73■□□□□ 0.592e-7■■■■■ 57.4
SMC4-211ENST00000469858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.1■■□□□ 1.772e-7■■■■■ 28
SMC4-211ENST00000469858 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.84■□□□□ 0.612e-7■■■■□ 26.2
SMC4-211ENST00000469858 TIA1P31483 386 aaKnown RBP eCLIP17.42■□□□□ 0.382e-7■■■□□ 18.7
SMC4-211ENST00000469858 FMR1Q06787 632 aaKnown RBP eCLIP20.35■□□□□ 0.853e-7■□□□□ 10
SMC4-211ENST00000469858 SF3A3Q12874 501 aaKnown RBP eCLIP18.22■□□□□ 0.513e-7■■■■■ 122.4
SMC4-211ENST00000469858 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.12■■□□□ 1.294e-7■■■■□ 23.1
SMC4-211ENST00000469858 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.24■□□□□ 0.675e-7■■■■□ 23.7
SMC4-211ENST00000469858 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.45□□□□□ -0.15e-7■■■■■ 48.1
SMC4-211ENST00000469858 TRA2AQ13595 282 aaKnown RBP eCLIP16.8■□□□□ 0.285e-7■■□□□ 14
SMC4-211ENST00000469858 U2AF2P26368 475 aaKnown RBP eCLIP20.96■□□□□ 0.956e-7■■■■■ 34.1
SMC4-211ENST00000469858 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.64■□□□□ 0.747e-7■■□□□ 12.7
SMC4-211ENST00000469858 QKIQ96PU8 341 aaKnown RBP eCLIP18.74■□□□□ 0.597e-7■■■■■ 232.7
SMC4-211ENST00000469858 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.1■□□□□ 0.811e-6■■■■■ 406.9
SMC4-211ENST00000469858 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.34■□□□□ 0.372e-6■■■■■ 54.3
SMC4-211ENST00000469858 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.66■□□□□ 0.742e-6■■■■■ 539.2
SMC4-211ENST00000469858 CPSF6Q16630 551 aaKnown RBP eCLIP17.64■□□□□ 0.412e-6■□□□□ 10
SMC4-211ENST00000469858 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.42■□□□□ 0.227e-6■■■□□ 17.7
SMC4-211ENST00000469858 EIF3HO15372 352 aaKnown RBP eCLIP18.62■□□□□ 0.578e-6■□□□□ 10.6
Retrieved 93 of 93 RNA–protein pairs in 18.2 ms