RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 DHX57Q6P158 1386 aaKnown RBP28.1■■■□□ 2.09
SMC4-209ENST00000468653 DNMT1P26358 1616 aaKnown RBP28.1■■■□□ 2.09
SMC4-209ENST00000468653 ABCC5O15440 1437 aa28.09■■■□□ 2.09
SMC4-209ENST00000468653 TTC37Q6PGP7 1564 aa28.09■■■□□ 2.09
SMC4-209ENST00000468653 PREX2Q70Z35 1606 aa28.06■■■□□ 2.08
SMC4-209ENST00000468653 WDR7Q9Y4E6 1490 aa28.06■■■□□ 2.08
SMC4-209ENST00000468653 RRP7BPQ9NSQ0 103 aa28.05■■■□□ 2.08
SMC4-209ENST00000468653 NAIPQ13075 1403 aa28.05■■■□□ 2.08
SMC4-209ENST00000468653 AKNAQ7Z591 1439 aa28.03■■■□□ 2.08
SMC4-209ENST00000468653 CDC42BPBQ9Y5S2 1711 aa28.02■■■□□ 2.08
SMC4-209ENST00000468653 ASXL2Q76L83 1435 aa28.01■■■□□ 2.07
SMC4-209ENST00000468653 CLSPNQ9HAW4 1339 aa28.01■■■□□ 2.07
SMC4-209ENST00000468653 MYO5CQ9NQX4 1742 aa28.01■■■□□ 2.07
SMC4-209ENST00000468653 ARHGAP5Q13017 1502 aa28■■■□□ 2.07
SMC4-209ENST00000468653 ROCK1Q13464 1354 aa27.99■■■□□ 2.07
SMC4-209ENST00000468653 RIMBP3CA6NJZ7 1639 aa27.98■■■□□ 2.07
SMC4-209ENST00000468653 RIMBP3BA6NNM3 1639 aa27.98■■■□□ 2.07
SMC4-209ENST00000468653 RIMBP3Q9UFD9 1639 aa27.98■■■□□ 2.07
SMC4-209ENST00000468653 PLCH2O75038 1416 aa27.96■■■□□ 2.07
SMC4-209ENST00000468653 CYB5RLQ6IPT4 315 aa27.96■■■□□ 2.07
SMC4-209ENST00000468653 SAMD9LQ8IVG5 1584 aa27.95■■■□□ 2.07
SMC4-209ENST00000468653 GCC2Q8IWJ2 1684 aa27.95■■■□□ 2.07
SMC4-209ENST00000468653 HNRNPMP52272 730 aaKnown RBP eCLIP27.94■■■□□ 2.062e-9■□□□□ 8.7
SMC4-209ENST00000468653 CROCC2H7BZ55 1655 aa27.92■■■□□ 2.06
SMC4-209ENST00000468653 EFCAB2Q5VUJ9 269 aa27.91■■■□□ 2.06
SMC4-209ENST00000468653 ARHGEF5Q12774 1597 aa27.9■■■□□ 2.06
SMC4-209ENST00000468653 TSPY4P0CV99 314 aa27.9■■■□□ 2.06
SMC4-209ENST00000468653 TSPY10P0CW01 314 aa27.9■■■□□ 2.06
SMC4-209ENST00000468653 RSPH4AQ5TD94 716 aa27.9■■■□□ 2.06
SMC4-209ENST00000468653 PLEKHH2Q8IVE3 1493 aa27.89■■■□□ 2.06
SMC4-209ENST00000468653 MBD5Q9P267 1494 aa27.89■■■□□ 2.06
SMC4-209ENST00000468653 SHANK2Q9UPX8 1470 aa27.88■■■□□ 2.05
SMC4-209ENST00000468653 ADGBQ8N7X0 1667 aa27.87■■■□□ 2.05
SMC4-209ENST00000468653 ANKRD30AQ9BXX3 1397 aa27.87■■■□□ 2.05
SMC4-209ENST00000468653 ADGRL2O95490 1459 aa27.87■■■□□ 2.05
SMC4-209ENST00000468653 ABCA9Q8IUA7 1624 aa27.86■■■□□ 2.05
SMC4-209ENST00000468653 NCOA1Q15788 1441 aa27.86■■■□□ 2.05
SMC4-209ENST00000468653 C9orf84Q5VXU9 1444 aa27.85■■■□□ 2.05
SMC4-209ENST00000468653 CCDC141Q6ZP82 1450 aa27.85■■■□□ 2.05
SMC4-209ENST00000468653 KIAA1107Q9UPP5 1409 aa27.85■■■□□ 2.05
SMC4-209ENST00000468653 ARAP3Q8WWN8 1544 aa27.85■■■□□ 2.05
SMC4-209ENST00000468653 SYCP2Q9BX26 1530 aa27.85■■■□□ 2.05
SMC4-209ENST00000468653 MAPKBP1O60336 1514 aa27.81■■■□□ 2.04
SMC4-209ENST00000468653 KDM6BO15054 1643 aa27.81■■■□□ 2.04
SMC4-209ENST00000468653 ACIN1Q9UKV3 1341 aaKnown RBP27.81■■■□□ 2.04
SMC4-209ENST00000468653 TRIM52Q96A61 297 aa27.8■■■□□ 2.04
SMC4-209ENST00000468653 FANCAO15360 1455 aa27.75■■■□□ 2.03
SMC4-209ENST00000468653 ABCC1P33527 1531 aa27.75■■■□□ 2.03
SMC4-209ENST00000468653 ARHGEF12Q9NZN5 1544 aa27.75■■■□□ 2.03
SMC4-209ENST00000468653 KIF15Q9NS87 1388 aa27.7■■■□□ 2.03
SMC4-209ENST00000468653 CD109Q6YHK3 1445 aa27.7■■■□□ 2.02
SMC4-209ENST00000468653 ANKRD50Q9ULJ7 1429 aa27.7■■■□□ 2.02
SMC4-209ENST00000468653 MAST1Q9Y2H9 1570 aa27.7■■■□□ 2.02
SMC4-209ENST00000468653 TRAPPC8Q9Y2L5 1435 aa27.67■■■□□ 2.02
SMC4-209ENST00000468653 MPHOSPH9Q99550 1183 aa27.65■■■□□ 2.02
SMC4-209ENST00000468653 ADGRL1O94910 1474 aa27.63■■■□□ 2.01
SMC4-209ENST00000468653 SIN3AQ96ST3 1273 aa27.63■■■□□ 2.01
SMC4-209ENST00000468653 NEUROD1Q13562 356 aa27.61■■■□□ 2.01
SMC4-209ENST00000468653 SCAPERQ9BY12 1400 aa27.61■■■□□ 2.01
SMC4-209ENST00000468653 AFAP1Q8N556 730 aa27.6■■■□□ 2.01
SMC4-209ENST00000468653 SPAG9O60271 1321 aaKnown RBP27.6■■■□□ 2.01
SMC4-209ENST00000468653 PLXNC1O60486 1568 aa27.59■■■□□ 2.01
SMC4-209ENST00000468653 CFAP74Q9C0B2 1584 aa27.58■■■□□ 2.01
SMC4-209ENST00000468653 SLC4A1APQ9BWU0 796 aaKnown RBP27.57■■■□□ 2
SMC4-209ENST00000468653 DENND4BO75064 1496 aaPredicted RBP27.56■■■□□ 2
SMC4-209ENST00000468653 RTEL1-TNFRSF6BF6WH68 1400 aa27.55■■■□□ 2
SMC4-209ENST00000468653 GLI2P10070 1586 aa27.53■■■□□ 2
SMC4-209ENST00000468653 DUOX2Q9NRD8 1548 aa27.52■■■□□ 2
SMC4-209ENST00000468653 PZPP20742 1482 aa27.51■■□□□ 1.99
SMC4-209ENST00000468653 TIMELESSQ9UNS1 1208 aa27.51■■□□□ 1.99
SMC4-209ENST00000468653 FAM69CQ0P6D2 419 aa27.5■■□□□ 1.99
SMC4-209ENST00000468653 NUP155O75694 1391 aa27.5■■□□□ 1.99
SMC4-209ENST00000468653 MAP3K4Q9Y6R4 1608 aa27.5■■□□□ 1.99
SMC4-209ENST00000468653 MYT1LQ9UL68 1186 aa27.5■■□□□ 1.99
SMC4-209ENST00000468653 NEO1Q92859 1461 aa27.49■■□□□ 1.99
SMC4-209ENST00000468653 ZFYVE16Q7Z3T8 1539 aa27.49■■□□□ 1.99
SMC4-209ENST00000468653 FOXD1Q16676 465 aa27.48■■□□□ 1.99
SMC4-209ENST00000468653 DIP2BQ9P265 1576 aa27.46■■□□□ 1.99
SMC4-209ENST00000468653 ZNF518AQ6AHZ1 1483 aa27.46■■□□□ 1.99
SMC4-209ENST00000468653 ATP7AQ04656 1500 aa27.46■■□□□ 1.99
SMC4-209ENST00000468653 ERBINQ96RT1 1412 aa27.46■■□□□ 1.99
SMC4-209ENST00000468653 INO80Q9ULG1 1556 aaPredicted RBP27.44■■□□□ 1.98
SMC4-209ENST00000468653 KDM5DQ9BY66 1539 aa27.44■■□□□ 1.98
SMC4-209ENST00000468653 TONSLQ96HA7 1378 aa27.42■■□□□ 1.98
SMC4-209ENST00000468653 PKD2Q13563 968 aa27.42■■□□□ 1.98
SMC4-209ENST00000468653 POGZQ7Z3K3 1410 aa27.42■■□□□ 1.98
SMC4-209ENST00000468653 ANKRD30BQ9BXX2 1392 aa27.41■■□□□ 1.98
SMC4-209ENST00000468653 UNC13BO14795 1591 aa27.38■■□□□ 1.97
SMC4-209ENST00000468653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.37■■□□□ 1.972e-7■■■■■ 32.9
SMC4-209ENST00000468653 KDM5CP41229 1560 aa27.35■■□□□ 1.97
SMC4-209ENST00000468653 FAM135AQ9P2D6 1515 aa27.34■■□□□ 1.97
SMC4-209ENST00000468653 ZNF316A6NFI3 1004 aaPredicted RBP27.33■■□□□ 1.97
SMC4-209ENST00000468653 KIDINS220Q9ULH0 1771 aa27.33■■□□□ 1.97
SMC4-209ENST00000468653 PPP1R15AO75807 674 aaPredicted RBP27.32■■□□□ 1.96
SMC4-209ENST00000468653 RAPGEF3O95398 923 aa27.32■■□□□ 1.96
SMC4-209ENST00000468653 MLH3Q9UHC1 1453 aa27.31■■□□□ 1.96
SMC4-209ENST00000468653 DHX29Q7Z478 1369 aaKnown RBP27.31■■□□□ 1.96
SMC4-209ENST00000468653 HECW2Q9P2P5 1572 aa27.29■■□□□ 1.96
SMC4-209ENST00000468653 MAGI2Q86UL8 1455 aa27.29■■□□□ 1.96
SMC4-209ENST00000468653 TEX14Q8IWB6 1497 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms