RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 POGZQ7Z3K3 1410 aa30.74■■■□□ 2.51
COL7A1-207ENST00000467985 ARHGAP5Q13017 1502 aa30.74■■■□□ 2.51
COL7A1-207ENST00000467985 ZFYVE16Q7Z3T8 1539 aa30.71■■■□□ 2.51
COL7A1-207ENST00000467985 ARID4BQ4LE39 1312 aaPredicted RBP30.7■■■□□ 2.5
COL7A1-207ENST00000467985 CEP162Q5TB80 1403 aa30.69■■■□□ 2.5
COL7A1-207ENST00000467985 ADAMTSL3P82987 1691 aa30.68■■■□□ 2.5
COL7A1-207ENST00000467985 PREX2Q70Z35 1606 aa30.66■■■□□ 2.5
COL7A1-207ENST00000467985 BCORL1Q5H9F3 1711 aa30.66■■■□□ 2.5
COL7A1-207ENST00000467985 CDC42BPBQ9Y5S2 1711 aa30.65■■■□□ 2.5
COL7A1-207ENST00000467985 ZNF518AQ6AHZ1 1483 aa30.64■■■□□ 2.5
COL7A1-207ENST00000467985 YEATS2Q9ULM3 1422 aa30.63■■■□□ 2.49
COL7A1-207ENST00000467985 CDC42BPAQ5VT25 1732 aa30.58■■■□□ 2.49
COL7A1-207ENST00000467985 KDM5CP41229 1560 aa30.57■■■□□ 2.48
COL7A1-207ENST00000467985 PTPRMP28827 1452 aa30.57■■■□□ 2.48
COL7A1-207ENST00000467985 ATP10AO60312 1499 aa30.56■■■□□ 2.48
COL7A1-207ENST00000467985 MADDQ8WXG6 1647 aa30.55■■■□□ 2.48
COL7A1-207ENST00000467985 MTUS2Q5JR59 1369 aa30.54■■■□□ 2.48
COL7A1-207ENST00000467985 ABCC1P33527 1531 aa30.54■■■□□ 2.48
COL7A1-207ENST00000467985 AFAP1Q8N556 730 aa30.54■■■□□ 2.48
COL7A1-207ENST00000467985 HECW2Q9P2P5 1572 aa30.53■■■□□ 2.48
COL7A1-207ENST00000467985 C9orf84Q5VXU9 1444 aa30.51■■■□□ 2.47
COL7A1-207ENST00000467985 GPATCH8Q9UKJ3 1502 aaKnown RBP30.49■■■□□ 2.47
COL7A1-207ENST00000467985 ITSN2Q9NZM3 1697 aa30.49■■■□□ 2.47
COL7A1-207ENST00000467985 SIGLEC1Q9BZZ2 1709 aa30.48■■■□□ 2.47
COL7A1-207ENST00000467985 MLH3Q9UHC1 1453 aa30.47■■■□□ 2.47
COL7A1-207ENST00000467985 LOC105371045A0A1W2PR82 267 aa30.47■■■□□ 2.47
COL7A1-207ENST00000467985 ARHGEF12Q9NZN5 1544 aa30.47■■■□□ 2.47
COL7A1-207ENST00000467985 CCNB3Q8WWL7 1395 aa30.46■■■□□ 2.47
COL7A1-207ENST00000467985 MYT1LQ9UL68 1186 aa30.46■■■□□ 2.47
COL7A1-207ENST00000467985 EHBP1L1Q8N3D4 1523 aa30.45■■■□□ 2.47
COL7A1-207ENST00000467985 RIMS1Q86UR5 1692 aaKnown RBP30.44■■■□□ 2.46
COL7A1-207ENST00000467985 TRAPPC8Q9Y2L5 1435 aa30.44■■■□□ 2.46
COL7A1-207ENST00000467985 CFDP1Q9UEE9 299 aaPredicted RBP30.42■■■□□ 2.46
COL7A1-207ENST00000467985 ZNF777Q9ULD5 760 aaPredicted RBP30.42■■■□□ 2.46
COL7A1-207ENST00000467985 SAMD9LQ8IVG5 1584 aa30.41■■■□□ 2.46
COL7A1-207ENST00000467985 DIP2CQ9Y2E4 1556 aa30.41■■■□□ 2.46
COL7A1-207ENST00000467985 PLEKHH2Q8IVE3 1493 aa30.4■■■□□ 2.46
COL7A1-207ENST00000467985 REREQ9P2R6 1566 aa30.4■■■□□ 2.46
COL7A1-207ENST00000467985 MLECQ14165 292 aa30.39■■■□□ 2.46
COL7A1-207ENST00000467985 KIAA1107Q9UPP5 1409 aa30.38■■■□□ 2.45
COL7A1-207ENST00000467985 SYCP2Q9BX26 1530 aa30.37■■■□□ 2.45
COL7A1-207ENST00000467985 ABCA6Q8N139 1617 aa30.36■■■□□ 2.45
COL7A1-207ENST00000467985 FER1L4A9Z1Z3 1794 aa30.36■■■□□ 2.45
COL7A1-207ENST00000467985 VPS8Q8N3P4 1428 aa30.36■■■□□ 2.45
COL7A1-207ENST00000467985 TIAM1Q13009 1591 aa30.34■■■□□ 2.45
COL7A1-207ENST00000467985 KIDINS220Q9ULH0 1771 aa30.32■■■□□ 2.44
COL7A1-207ENST00000467985 HNRNPMP52272 730 aaKnown RBP eCLIP30.31■■■□□ 2.44
COL7A1-207ENST00000467985 SPAG9O60271 1321 aaKnown RBP30.29■■■□□ 2.44
COL7A1-207ENST00000467985 AGLP35573 1532 aa30.29■■■□□ 2.44
COL7A1-207ENST00000467985 SUPT6HQ7KZ85 1726 aaKnown RBP30.29■■■□□ 2.44
COL7A1-207ENST00000467985 NCOA2Q15596 1464 aa30.25■■■□□ 2.43
COL7A1-207ENST00000467985 ATP7AQ04656 1500 aa30.22■■■□□ 2.43
COL7A1-207ENST00000467985 LMTK3Q96Q04 1460 aa30.22■■■□□ 2.43
COL7A1-207ENST00000467985 PLPPR3Q6T4P5 718 aa30.21■■■□□ 2.43
COL7A1-207ENST00000467985 MAP3K1Q13233 1512 aa30.21■■■□□ 2.43
COL7A1-207ENST00000467985 INO80Q9ULG1 1556 aaPredicted RBP30.2■■■□□ 2.43
COL7A1-207ENST00000467985 LRRC9Q6ZRR7 1453 aa30.19■■■□□ 2.42
COL7A1-207ENST00000467985 ZNF644Q9H582 1327 aaPredicted RBP30.19■■■□□ 2.42
COL7A1-207ENST00000467985 ESF1Q9H501 851 aaKnown RBP30.16■■■□□ 2.42
COL7A1-207ENST00000467985 MBD5Q9P267 1494 aa30.16■■■□□ 2.42
COL7A1-207ENST00000467985 A2MP01023 1474 aa30.11■■■□□ 2.41
COL7A1-207ENST00000467985 RSPH4AQ5TD94 716 aa30.1■■■□□ 2.41
COL7A1-207ENST00000467985 RTEL1-TNFRSF6BF6WH68 1400 aa30.1■■■□□ 2.41
COL7A1-207ENST00000467985 CNTLNQ9NXG0 1405 aa30.1■■■□□ 2.41
COL7A1-207ENST00000467985 CAMSAP2Q08AD1 1489 aa30.1■■■□□ 2.41
COL7A1-207ENST00000467985 PLXNC1O60486 1568 aa30.1■■■□□ 2.41
COL7A1-207ENST00000467985 ADGBQ8N7X0 1667 aa30.09■■■□□ 2.41
COL7A1-207ENST00000467985 CEBPAP49715 358 aaPredicted RBP30.08■■■□□ 2.41
COL7A1-207ENST00000467985 PREX1Q8TCU6 1659 aa30.07■■■□□ 2.41
COL7A1-207ENST00000467985 CCDC141Q6ZP82 1450 aa30.07■■■□□ 2.4
COL7A1-207ENST00000467985 APLP2Q06481 763 aa30.04■■■□□ 2.4
COL7A1-207ENST00000467985 C3P01024 1663 aa30.04■■■□□ 2.4
COL7A1-207ENST00000467985 SETD1BQ9UPS6 1966 aaKnown RBP30.03■■■□□ 2.4
COL7A1-207ENST00000467985 KANK4Q5T7N3 995 aaPredicted RBP30.03■■■□□ 2.4
COL7A1-207ENST00000467985 ARHGEF5Q12774 1597 aa30.02■■■□□ 2.4
COL7A1-207ENST00000467985 HSPA2P54652 639 aa30.01■■■□□ 2.39
COL7A1-207ENST00000467985 MROH2AA6NES4 1674 aa30■■■□□ 2.39
COL7A1-207ENST00000467985 UHRF1BP1Q6BDS2 1440 aa29.98■■■□□ 2.39
COL7A1-207ENST00000467985 MIA2Q96PC5 1412 aa29.97■■■□□ 2.39
COL7A1-207ENST00000467985 MYOM3Q5VTT5 1437 aa29.96■■■□□ 2.39
COL7A1-207ENST00000467985 DHX29Q7Z478 1369 aaKnown RBP29.96■■■□□ 2.39
COL7A1-207ENST00000467985 TSPY4P0CV99 314 aa29.96■■■□□ 2.39
COL7A1-207ENST00000467985 TSPY10P0CW01 314 aa29.96■■■□□ 2.39
COL7A1-207ENST00000467985 PPP6R1Q9UPN7 881 aa29.96■■■□□ 2.39
COL7A1-207ENST00000467985 GGT6Q6P531 493 aa29.92■■■□□ 2.38
COL7A1-207ENST00000467985 ZMYM3Q14202 1370 aa29.91■■■□□ 2.38
COL7A1-207ENST00000467985 NPATQ14207 1427 aa29.9■■■□□ 2.38
COL7A1-207ENST00000467985 CLTCQ00610 1675 aaKnown RBP29.9■■■□□ 2.38
COL7A1-207ENST00000467985 ILDR1Q86SU0 546 aaPredicted RBP29.86■■■□□ 2.37
COL7A1-207ENST00000467985 MAST1Q9Y2H9 1570 aa29.86■■■□□ 2.37
COL7A1-207ENST00000467985 KIF3BO15066 747 aa29.83■■■□□ 2.37
COL7A1-207ENST00000467985 FAM135AQ9P2D6 1515 aa29.82■■■□□ 2.36
COL7A1-207ENST00000467985 DMRT2Q9Y5R5 561 aa29.8■■■□□ 2.36
COL7A1-207ENST00000467985 PTPRKQ15262 1439 aa29.77■■■□□ 2.36
COL7A1-207ENST00000467985 PTPN23Q9H3S7 1636 aa29.76■■■□□ 2.35
COL7A1-207ENST00000467985 STRCQ7RTU9 1775 aa29.75■■■□□ 2.35
COL7A1-207ENST00000467985 KDM5DQ9BY66 1539 aa29.75■■■□□ 2.35
COL7A1-207ENST00000467985 FGD6Q6ZV73 1430 aa29.73■■■□□ 2.35
COL7A1-207ENST00000467985 SHANK2Q9UPX8 1470 aa29.72■■■□□ 2.35
COL7A1-207ENST00000467985 WASHC2CQ9Y4E1 1318 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms