RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 MYO5CQ9NQX4 1742 aa19.52■□□□□ 0.72
PTPRF-211ENST00000467464 MAGI2Q86UL8 1455 aa19.52■□□□□ 0.72
PTPRF-211ENST00000467464 ZFYVE16Q7Z3T8 1539 aa19.51■□□□□ 0.71
PTPRF-211ENST00000467464 BCORL1Q5H9F3 1711 aa19.51■□□□□ 0.71
PTPRF-211ENST00000467464 EFCAB2Q5VUJ9 269 aa19.51■□□□□ 0.71
PTPRF-211ENST00000467464 HECW2Q9P2P5 1572 aa19.51■□□□□ 0.71
PTPRF-211ENST00000467464 PTPRMP28827 1452 aa19.5■□□□□ 0.71
PTPRF-211ENST00000467464 SIGLEC1Q9BZZ2 1709 aa19.5■□□□□ 0.71
PTPRF-211ENST00000467464 ARHGAP5Q13017 1502 aa19.48■□□□□ 0.71
PTPRF-211ENST00000467464 MADDQ8WXG6 1647 aa19.47■□□□□ 0.71
PTPRF-211ENST00000467464 KDM5CP41229 1560 aa19.46■□□□□ 0.71
PTPRF-211ENST00000467464 PREX2Q70Z35 1606 aa19.45■□□□□ 0.7
PTPRF-211ENST00000467464 ZNF518AQ6AHZ1 1483 aa19.44■□□□□ 0.7
PTPRF-211ENST00000467464 ARID4BQ4LE39 1312 aaPredicted RBP19.44■□□□□ 0.7
PTPRF-211ENST00000467464 CDC42BPBQ9Y5S2 1711 aa19.43■□□□□ 0.7
PTPRF-211ENST00000467464 ARHGEF12Q9NZN5 1544 aa19.43■□□□□ 0.7
PTPRF-211ENST00000467464 CEP162Q5TB80 1403 aa19.42■□□□□ 0.7
PTPRF-211ENST00000467464 ABCC1P33527 1531 aa19.41■□□□□ 0.7
PTPRF-211ENST00000467464 AFAP1Q8N556 730 aa19.41■□□□□ 0.7
PTPRF-211ENST00000467464 ATP10AO60312 1499 aa19.41■□□□□ 0.7
PTPRF-211ENST00000467464 C9orf84Q5VXU9 1444 aa19.4■□□□□ 0.7
PTPRF-211ENST00000467464 TRAPPC8Q9Y2L5 1435 aa19.39■□□□□ 0.69
PTPRF-211ENST00000467464 GPATCH8Q9UKJ3 1502 aaKnown RBP19.37■□□□□ 0.69
PTPRF-211ENST00000467464 CDC42BPAQ5VT25 1732 aa19.37■□□□□ 0.69
PTPRF-211ENST00000467464 MLH3Q9UHC1 1453 aa19.36■□□□□ 0.69
PTPRF-211ENST00000467464 DIP2CQ9Y2E4 1556 aa19.36■□□□□ 0.69
PTPRF-211ENST00000467464 RIMS1Q86UR5 1692 aaKnown RBP19.35■□□□□ 0.69
PTPRF-211ENST00000467464 ITSN2Q9NZM3 1697 aa19.33■□□□□ 0.69
PTPRF-211ENST00000467464 SAMD9LQ8IVG5 1584 aa19.33■□□□□ 0.69
PTPRF-211ENST00000467464 REREQ9P2R6 1566 aa19.33■□□□□ 0.69
PTPRF-211ENST00000467464 ABCA6Q8N139 1617 aa19.33■□□□□ 0.68
PTPRF-211ENST00000467464 LMTK3Q96Q04 1460 aa19.32■□□□□ 0.68
PTPRF-211ENST00000467464 MLECQ14165 292 aa19.3■□□□□ 0.68
PTPRF-211ENST00000467464 MTUS2Q5JR59 1369 aa19.3■□□□□ 0.68
PTPRF-211ENST00000467464 SYCP2Q9BX26 1530 aa19.29■□□□□ 0.68
PTPRF-211ENST00000467464 EHBP1L1Q8N3D4 1523 aa19.28■□□□□ 0.68
PTPRF-211ENST00000467464 LOC105371045A0A1W2PR82 267 aa19.27■□□□□ 0.68
PTPRF-211ENST00000467464 TIAM1Q13009 1591 aa19.27■□□□□ 0.67
PTPRF-211ENST00000467464 KIDINS220Q9ULH0 1771 aa19.27■□□□□ 0.67
PTPRF-211ENST00000467464 KIAA1107Q9UPP5 1409 aa19.26■□□□□ 0.67
PTPRF-211ENST00000467464 AGLP35573 1532 aa19.26■□□□□ 0.67
PTPRF-211ENST00000467464 CCNB3Q8WWL7 1395 aa19.26■□□□□ 0.67
PTPRF-211ENST00000467464 FER1L4A9Z1Z3 1794 aa19.25■□□□□ 0.67
PTPRF-211ENST00000467464 ZNF777Q9ULD5 760 aaPredicted RBP19.24■□□□□ 0.67
PTPRF-211ENST00000467464 CFDP1Q9UEE9 299 aaPredicted RBP19.23■□□□□ 0.67
PTPRF-211ENST00000467464 PLEKHH2Q8IVE3 1493 aa19.22■□□□□ 0.67
PTPRF-211ENST00000467464 HNRNPMP52272 730 aaKnown RBP eCLIP19.22■□□□□ 0.674e-8■■■□□ 15.4
PTPRF-211ENST00000467464 INO80Q9ULG1 1556 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-211ENST00000467464 VPS8Q8N3P4 1428 aa19.2■□□□□ 0.66
PTPRF-211ENST00000467464 MYT1LQ9UL68 1186 aa19.2■□□□□ 0.66
PTPRF-211ENST00000467464 MBD5Q9P267 1494 aa19.2■□□□□ 0.66
PTPRF-211ENST00000467464 ZNF644Q9H582 1327 aaPredicted RBP19.19■□□□□ 0.66
PTPRF-211ENST00000467464 PLPPR3Q6T4P5 718 aa19.18■□□□□ 0.66
PTPRF-211ENST00000467464 ATP7AQ04656 1500 aa19.18■□□□□ 0.66
PTPRF-211ENST00000467464 SPAG9O60271 1321 aaKnown RBP19.18■□□□□ 0.66
PTPRF-211ENST00000467464 NCOA2Q15596 1464 aa19.17■□□□□ 0.66
PTPRF-211ENST00000467464 CEBPAP49715 358 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-211ENST00000467464 PLXNC1O60486 1568 aa19.16■□□□□ 0.66
PTPRF-211ENST00000467464 HSPA2P54652 639 aa19.16■□□□□ 0.66
PTPRF-211ENST00000467464 ILDR1Q86SU0 546 aaPredicted RBP19.16■□□□□ 0.66
PTPRF-211ENST00000467464 LRRC9Q6ZRR7 1453 aa19.12■□□□□ 0.65
PTPRF-211ENST00000467464 A2MP01023 1474 aa19.11■□□□□ 0.65
PTPRF-211ENST00000467464 SUPT6HQ7KZ85 1726 aaKnown RBP19.11■□□□□ 0.65
PTPRF-211ENST00000467464 MAP3K1Q13233 1512 aa19.1■□□□□ 0.65
PTPRF-211ENST00000467464 RTEL1-TNFRSF6BF6WH68 1400 aa19.09■□□□□ 0.65
PTPRF-211ENST00000467464 CAMSAP2Q08AD1 1489 aa19.09■□□□□ 0.65
PTPRF-211ENST00000467464 CNTLNQ9NXG0 1405 aa19.08■□□□□ 0.65
PTPRF-211ENST00000467464 C3P01024 1663 aa19.08■□□□□ 0.65
PTPRF-211ENST00000467464 PREX1Q8TCU6 1659 aa19.08■□□□□ 0.65
PTPRF-211ENST00000467464 CCDC141Q6ZP82 1450 aa19.06■□□□□ 0.64
PTPRF-211ENST00000467464 KANK4Q5T7N3 995 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-211ENST00000467464 UHRF1BP1Q6BDS2 1440 aa19.06■□□□□ 0.64
PTPRF-211ENST00000467464 MROH2AA6NES4 1674 aa19.02■□□□□ 0.64
PTPRF-211ENST00000467464 ADGBQ8N7X0 1667 aa19.02■□□□□ 0.64
PTPRF-211ENST00000467464 DHX29Q7Z478 1369 aaKnown RBP19.02■□□□□ 0.64
PTPRF-211ENST00000467464 ARHGEF5Q12774 1597 aa19.02■□□□□ 0.63
PTPRF-211ENST00000467464 ZMYM3Q14202 1370 aa19.01■□□□□ 0.63
PTPRF-211ENST00000467464 NPATQ14207 1427 aa19■□□□□ 0.63
PTPRF-211ENST00000467464 ESF1Q9H501 851 aaKnown RBP19■□□□□ 0.63
PTPRF-211ENST00000467464 RSPH4AQ5TD94 716 aa18.97■□□□□ 0.63
PTPRF-211ENST00000467464 MYOM3Q5VTT5 1437 aa18.97■□□□□ 0.63
PTPRF-211ENST00000467464 GGT6Q6P531 493 aa18.96■□□□□ 0.63
PTPRF-211ENST00000467464 PTPRKQ15262 1439 aa18.96■□□□□ 0.63
PTPRF-211ENST00000467464 MIA2Q96PC5 1412 aa18.96■□□□□ 0.63
PTPRF-211ENST00000467464 STRCQ7RTU9 1775 aa18.96■□□□□ 0.63
PTPRF-211ENST00000467464 CLTCQ00610 1675 aaKnown RBP18.95■□□□□ 0.62
PTPRF-211ENST00000467464 FBXO41Q8TF61 875 aa18.95■□□□□ 0.62
PTPRF-211ENST00000467464 PPP6R1Q9UPN7 881 aa18.95■□□□□ 0.62
PTPRF-211ENST00000467464 MAST1Q9Y2H9 1570 aa18.93■□□□□ 0.62
PTPRF-211ENST00000467464 NCOA1Q15788 1441 aa18.91■□□□□ 0.62
PTPRF-211ENST00000467464 SETD1BQ9UPS6 1966 aaKnown RBP18.91■□□□□ 0.62
PTPRF-211ENST00000467464 FAM135AQ9P2D6 1515 aa18.9■□□□□ 0.62
PTPRF-211ENST00000467464 KIF3BO15066 747 aa18.89■□□□□ 0.61
PTPRF-211ENST00000467464 PTPRTO14522 1441 aa18.89■□□□□ 0.61
PTPRF-211ENST00000467464 MYO3AQ8NEV4 1616 aa18.89■□□□□ 0.61
PTPRF-211ENST00000467464 TSPY4P0CV99 314 aa18.88■□□□□ 0.61
PTPRF-211ENST00000467464 TSPY10P0CW01 314 aa18.88■□□□□ 0.61
PTPRF-211ENST00000467464 KDM5DQ9BY66 1539 aa18.88■□□□□ 0.61
PTPRF-211ENST00000467464 ZNF142P52746 1687 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-211ENST00000467464 CAMSAP1Q5T5Y3 1602 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms