RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
HPS4-209ENST00000466781 SIN3AQ96ST3 1273 aa11.25□□□□□ -0.61
HPS4-209ENST00000466781 KCNJ4P48050 445 aa11.24□□□□□ -0.61
HPS4-209ENST00000466781 NEUROD2Q15784 382 aa11.24□□□□□ -0.61
HPS4-209ENST00000466781 TNNT2P45379 298 aaPredicted RBP11.24□□□□□ -0.61
HPS4-209ENST00000466781 CARD11Q9BXL7 1154 aa11.24□□□□□ -0.61
HPS4-209ENST00000466781 PTPRGP23470 1445 aa11.23□□□□□ -0.61
HPS4-209ENST00000466781 ISY1Q9ULR0 285 aaKnown RBP11.23□□□□□ -0.61
HPS4-209ENST00000466781 CCDC18Q5T9S5 1454 aa11.22□□□□□ -0.61
HPS4-209ENST00000466781 MIER1Q8N108 512 aa11.22□□□□□ -0.61
HPS4-209ENST00000466781 FHOD3Q2V2M9 1422 aa11.21□□□□□ -0.61
HPS4-209ENST00000466781 RAD54L2Q9Y4B4 1467 aa11.21□□□□□ -0.62
HPS4-209ENST00000466781 PLCB2Q00722 1185 aa11.21□□□□□ -0.62
HPS4-209ENST00000466781 U2SURPO15042 1029 aaKnown RBP11.2□□□□□ -0.62
HPS4-209ENST00000466781 MS4A1P11836 297 aa11.2□□□□□ -0.62
HPS4-209ENST00000466781 PRDM2Q13029 1718 aa11.19□□□□□ -0.62
HPS4-209ENST00000466781 NRDCO43847 1150 aa11.19□□□□□ -0.62
HPS4-209ENST00000466781 HSP90AB1P08238 724 aaKnown RBP11.19□□□□□ -0.62
HPS4-209ENST00000466781 SAFB2Q14151 953 aaKnown RBP eCLIP11.19□□□□□ -0.62
HPS4-209ENST00000466781 ANKRD30AQ9BXX3 1397 aa11.19□□□□□ -0.62
HPS4-209ENST00000466781 SPAG9O60271 1321 aaKnown RBP11.19□□□□□ -0.62
HPS4-209ENST00000466781 FRAT1Q92837 279 aaPredicted RBP11.19□□□□□ -0.62
HPS4-209ENST00000466781 EID1Q9Y6B2 187 aa11.18□□□□□ -0.62
HPS4-209ENST00000466781 HNRNPMP52272 730 aaKnown RBP eCLIP11.18□□□□□ -0.62
HPS4-209ENST00000466781 CC2D1BQ5T0F9 858 aaKnown RBP11.18□□□□□ -0.62
HPS4-209ENST00000466781 FOXD1Q16676 465 aa11.17□□□□□ -0.62
HPS4-209ENST00000466781 VPS8Q8N3P4 1428 aa11.17□□□□□ -0.62
HPS4-209ENST00000466781 AQRO60306 1485 aaKnown RBP eCLIP11.17□□□□□ -0.623e-8■■■■□ 23.8
HPS4-209ENST00000466781 SOX12O15370 315 aa11.17□□□□□ -0.62
HPS4-209ENST00000466781 KIF3BO15066 747 aa11.16□□□□□ -0.62
HPS4-209ENST00000466781 FAM69CQ0P6D2 419 aa11.16□□□□□ -0.62
HPS4-209ENST00000466781 TMX4Q9H1E5 349 aaPredicted RBP11.16□□□□□ -0.62
HPS4-209ENST00000466781 IFT140Q96RY7 1462 aa11.16□□□□□ -0.62
HPS4-209ENST00000466781 HMGXB3Q12766 1538 aa11.15□□□□□ -0.62
HPS4-209ENST00000466781 NESP48681 1621 aa11.15□□□□□ -0.62
HPS4-209ENST00000466781 GOLGA6L4A6NEF3 574 aa11.15□□□□□ -0.62
HPS4-209ENST00000466781 DCAF11Q8TEB1 546 aa11.15□□□□□ -0.62
HPS4-209ENST00000466781 SRPK2P78362 688 aaKnown RBP11.15□□□□□ -0.62
HPS4-209ENST00000466781 WASHC2CQ9Y4E1 1318 aa11.15□□□□□ -0.62
HPS4-209ENST00000466781 MCCP23508 829 aa11.15□□□□□ -0.63
HPS4-209ENST00000466781 KANK4Q5T7N3 995 aaPredicted RBP11.14□□□□□ -0.63
HPS4-209ENST00000466781 RSPH4AQ5TD94 716 aa11.14□□□□□ -0.63
HPS4-209ENST00000466781 STK26Q9P289 416 aa11.14□□□□□ -0.63
HPS4-209ENST00000466781 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
HPS4-209ENST00000466781 GNL2Q13823 731 aaKnown RBP11.13□□□□□ -0.63
HPS4-209ENST00000466781 RTF1Q92541 710 aaKnown RBP11.13□□□□□ -0.63
HPS4-209ENST00000466781 RGS3P49796 1198 aa11.12□□□□□ -0.63
HPS4-209ENST00000466781 L1TD1Q5T7N2 865 aaKnown RBP11.12□□□□□ -0.63
HPS4-209ENST00000466781 PKD2Q13563 968 aa11.11□□□□□ -0.63
HPS4-209ENST00000466781 TMF1P82094 1093 aa11.11□□□□□ -0.63
HPS4-209ENST00000466781 NUTM2DQ5VT03 806 aaPredicted RBP11.11□□□□□ -0.63
HPS4-209ENST00000466781 SETD5Q9C0A6 1442 aa11.1□□□□□ -0.63
HPS4-209ENST00000466781 CSB-PGBD3P0DP91 1061 aa11.1□□□□□ -0.63
HPS4-209ENST00000466781 NUP155O75694 1391 aa11.1□□□□□ -0.63
HPS4-209ENST00000466781 KIAA2012Q0VF49 1180 aa11.1□□□□□ -0.63
HPS4-209ENST00000466781 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
HPS4-209ENST00000466781 HSCBQ8IWL3 235 aa11.09□□□□□ -0.63
HPS4-209ENST00000466781 NAP1L5Q96NT1 182 aaPredicted RBP11.09□□□□□ -0.63
HPS4-209ENST00000466781 CCDC9Q9Y3X0 531 aaKnown RBP11.08□□□□□ -0.63
HPS4-209ENST00000466781 CFAP44Q96MT7 982 aa11.08□□□□□ -0.64
HPS4-209ENST00000466781 HDGFL2Q7Z4V5 671 aaPredicted RBP11.08□□□□□ -0.64
HPS4-209ENST00000466781 CHAF1AQ13111 956 aaPredicted RBP11.08□□□□□ -0.64
HPS4-209ENST00000466781 DRC7Q8IY82 874 aa11.07□□□□□ -0.64
HPS4-209ENST00000466781 PRM3Q9NNZ6 103 aa11.07□□□□□ -0.64
HPS4-209ENST00000466781 ZNF330Q9Y3S2 320 aaPredicted RBP11.07□□□□□ -0.64
HPS4-209ENST00000466781 MORC1Q86VD1 984 aa11.07□□□□□ -0.64
HPS4-209ENST00000466781 CFTRP13569 1480 aa11.07□□□□□ -0.64
HPS4-209ENST00000466781 SUPT16HQ9Y5B9 1047 aaKnown RBP11.06□□□□□ -0.64
HPS4-209ENST00000466781 ERICH6BQ5W0A0 696 aa11.06□□□□□ -0.64
HPS4-209ENST00000466781 LAMC3Q9Y6N6 1575 aa11.05□□□□□ -0.64
HPS4-209ENST00000466781 G3V3G9 751 aa11.05□□□□□ -0.64
HPS4-209ENST00000466781 DCAF8Q5TAQ9 597 aa11.05□□□□□ -0.64
HPS4-209ENST00000466781 SNAPC4Q5SXM2 1469 aa11.04□□□□□ -0.64
HPS4-209ENST00000466781 EIF3AQ14152 1382 aaKnown RBP11.04□□□□□ -0.64
HPS4-209ENST00000466781 PRG4Q92954 1404 aaPredicted RBP11.04□□□□□ -0.64
HPS4-209ENST00000466781 KIAA1211Q6ZU35 1233 aa11.04□□□□□ -0.64
HPS4-209ENST00000466781 TOPBP1Q92547 1522 aa11.03□□□□□ -0.64
HPS4-209ENST00000466781 IGF1RP08069 1367 aa11.03□□□□□ -0.64
HPS4-209ENST00000466781 DNMBPQ6XZF7 1577 aa11.02□□□□□ -0.64
HPS4-209ENST00000466781 NOC3LQ8WTT2 800 aaKnown RBP11.02□□□□□ -0.64
HPS4-209ENST00000466781 RUSC2Q8N2Y8 1516 aa11.02□□□□□ -0.65
HPS4-209ENST00000466781 ROCK2O75116 1388 aaKnown RBP11.02□□□□□ -0.65
HPS4-209ENST00000466781 BICRAQ9NZM4 1560 aa11.02□□□□□ -0.65
HPS4-209ENST00000466781 MPHOSPH9Q99550 1183 aa11.02□□□□□ -0.65
HPS4-209ENST00000466781 PPP4R2Q9NY27 417 aa11.02□□□□□ -0.65
HPS4-209ENST00000466781 TAF7LQ5H9L4 462 aa11.01□□□□□ -0.65
HPS4-209ENST00000466781 CALD1Q05682 793 aaKnown RBP11.01□□□□□ -0.65
HPS4-209ENST00000466781 GORABQ5T7V8 394 aa11□□□□□ -0.65
HPS4-209ENST00000466781 MSNP26038 577 aaKnown RBP11□□□□□ -0.65
HPS4-209ENST00000466781 UNC13AQ9UPW8 1703 aa11□□□□□ -0.65
HPS4-209ENST00000466781 APBB1O00213 710 aa10.99□□□□□ -0.65
HPS4-209ENST00000466781 CHMP3Q9Y3E7 222 aa10.99□□□□□ -0.65
HPS4-209ENST00000466781 DNAJC5BQ9UF47 199 aa10.99□□□□□ -0.65
HPS4-209ENST00000466781 ARHGAP5Q13017 1502 aa10.99□□□□□ -0.65
HPS4-209ENST00000466781 IPO8O15397 1037 aaKnown RBP10.99□□□□□ -0.65
HPS4-209ENST00000466781 HTATSF1O43719 755 aaKnown RBP10.98□□□□□ -0.65
HPS4-209ENST00000466781 UACAQ9BZF9 1416 aa10.98□□□□□ -0.65
HPS4-209ENST00000466781 HSPA5P11021 654 aaKnown RBP10.98□□□□□ -0.65
HPS4-209ENST00000466781 SYNJ2O15056 1496 aa10.98□□□□□ -0.65
HPS4-209ENST00000466781 GPATCH3Q96I76 525 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms