RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 SMG6Q86US8 1419 aaKnown RBP26.89■■□□□ 1.9
SDF4-205ENST00000465727 L3MBTL2Q969R5 705 aa26.85■■□□□ 1.89
SDF4-205ENST00000465727 MIA2Q96PC5 1412 aa26.84■■□□□ 1.89
SDF4-205ENST00000465727 RRP7BPQ9NSQ0 103 aa26.84■■□□□ 1.89
SDF4-205ENST00000465727 KDM6BO15054 1643 aa26.83■■□□□ 1.89
SDF4-205ENST00000465727 MPHOSPH9Q99550 1183 aa26.83■■□□□ 1.89
SDF4-205ENST00000465727 RPRD2Q5VT52 1461 aaKnown RBP26.83■■□□□ 1.89
SDF4-205ENST00000465727 C11orf95C9JLR9 678 aaPredicted RBP26.83■■□□□ 1.89
SDF4-205ENST00000465727 SPATA31E1Q6ZUB1 1445 aa26.82■■□□□ 1.88
SDF4-205ENST00000465727 URB2Q14146 1524 aaKnown RBP26.82■■□□□ 1.88
SDF4-205ENST00000465727 MAGI3Q5TCQ9 1506 aa26.82■■□□□ 1.88
SDF4-205ENST00000465727 RNF123Q5XPI4 1314 aa26.81■■□□□ 1.88
SDF4-205ENST00000465727 TEX14Q8IWB6 1497 aa26.8■■□□□ 1.88
SDF4-205ENST00000465727 KIF7Q2M1P5 1343 aa26.77■■□□□ 1.88
SDF4-205ENST00000465727 ANKRD30BQ9BXX2 1392 aa26.75■■□□□ 1.87
SDF4-205ENST00000465727 ANP32AP39687 249 aaKnown RBP26.75■■□□□ 1.87
SDF4-205ENST00000465727 NUDCQ9Y266 331 aa26.74■■□□□ 1.87
SDF4-205ENST00000465727 CHIC2Q9UKJ5 165 aa26.74■■□□□ 1.87
SDF4-205ENST00000465727 IPO9Q96P70 1041 aaKnown RBP26.72■■□□□ 1.87
SDF4-205ENST00000465727 ROCK1Q13464 1354 aa26.72■■□□□ 1.87
SDF4-205ENST00000465727 PAK3O75914 559 aaPredicted RBP26.7■■□□□ 1.86
SDF4-205ENST00000465727 CCDC136Q96JN2 1154 aa26.69■■□□□ 1.86
SDF4-205ENST00000465727 NBPF8Q3BBV2 869 aa26.68■■□□□ 1.86
SDF4-205ENST00000465727 NBR1Q14596 966 aa26.66■■□□□ 1.86
SDF4-205ENST00000465727 GAPVD1Q14C86 1478 aa26.66■■□□□ 1.86
SDF4-205ENST00000465727 EPRSP07814 1512 aaKnown RBP26.66■■□□□ 1.86
SDF4-205ENST00000465727 DHX29Q7Z478 1369 aaKnown RBP26.65■■□□□ 1.86
SDF4-205ENST00000465727 ARID4BQ4LE39 1312 aaPredicted RBP26.63■■□□□ 1.85
SDF4-205ENST00000465727 RTL5Q5HYW3 569 aaPredicted RBP26.62■■□□□ 1.85
SDF4-205ENST00000465727 ZBTB47Q9UFB7 747 aaPredicted RBP26.62■■□□□ 1.85
SDF4-205ENST00000465727 DNMT1P26358 1616 aaKnown RBP26.61■■□□□ 1.85
SDF4-205ENST00000465727 DAPK1P53355 1430 aa26.59■■□□□ 1.85
SDF4-205ENST00000465727 FOXD1Q16676 465 aa26.58■■□□□ 1.84
SDF4-205ENST00000465727 MBD5Q9P267 1494 aa26.57■■□□□ 1.84
SDF4-205ENST00000465727 DNAJC5Q9H3Z4 198 aa26.56■■□□□ 1.84
SDF4-205ENST00000465727 KIF14Q15058 1648 aa26.54■■□□□ 1.84
SDF4-205ENST00000465727 ROCK2O75116 1388 aaKnown RBP26.53■■□□□ 1.84
SDF4-205ENST00000465727 TDRD9Q8NDG6 1382 aaKnown RBP26.53■■□□□ 1.84
SDF4-205ENST00000465727 BCORL1Q5H9F3 1711 aa26.52■■□□□ 1.84
SDF4-205ENST00000465727 CDK13Q14004 1512 aaKnown RBP26.5■■□□□ 1.83
SDF4-205ENST00000465727 IQGAP2Q13576 1575 aa26.5■■□□□ 1.83
SDF4-205ENST00000465727 SLC4A1APQ9BWU0 796 aaKnown RBP26.5■■□□□ 1.83
SDF4-205ENST00000465727 ABCC5O15440 1437 aa26.5■■□□□ 1.83
SDF4-205ENST00000465727 KDM5CP41229 1560 aa26.49■■□□□ 1.83
SDF4-205ENST00000465727 USP47Q96K76 1375 aa26.49■■□□□ 1.83
SDF4-205ENST00000465727 PNISRQ8TF01 805 aaKnown RBP26.48■■□□□ 1.83
SDF4-205ENST00000465727 KTN1Q86UP2 1357 aaKnown RBP26.47■■□□□ 1.83
SDF4-205ENST00000465727 IFT140Q96RY7 1462 aa26.45■■□□□ 1.82
SDF4-205ENST00000465727 PZPP20742 1482 aa26.44■■□□□ 1.82
SDF4-205ENST00000465727 LRPPRCP42704 1394 aaKnown RBP26.44■■□□□ 1.82
SDF4-205ENST00000465727 TCERG1O14776 1098 aaKnown RBP26.43■■□□□ 1.82
SDF4-205ENST00000465727 USP35Q9P2H5 1018 aa26.43■■□□□ 1.82
SDF4-205ENST00000465727 ZNF608Q9ULD9 1512 aaPredicted RBP26.41■■□□□ 1.82
SDF4-205ENST00000465727 TMC1Q8TDI8 760 aa26.4■■□□□ 1.82
SDF4-205ENST00000465727 ADGBQ8N7X0 1667 aa26.4■■□□□ 1.82
SDF4-205ENST00000465727 KIF15Q9NS87 1388 aa26.4■■□□□ 1.82
SDF4-205ENST00000465727 BRD4O60885 1362 aaPredicted RBP26.39■■□□□ 1.82
SDF4-205ENST00000465727 KIAA1107Q9UPP5 1409 aa26.39■■□□□ 1.82
SDF4-205ENST00000465727 UHRF1BP1Q6BDS2 1440 aa26.37■■□□□ 1.81
SDF4-205ENST00000465727 PBRM1Q86U86 1689 aa26.37■■□□□ 1.81
SDF4-205ENST00000465727 TARBP1Q13395 1621 aaKnown RBP26.36■■□□□ 1.81
SDF4-205ENST00000465727 RALGAPBQ86X10 1494 aa26.36■■□□□ 1.81
SDF4-205ENST00000465727 MS4A1P11836 297 aa26.36■■□□□ 1.81
SDF4-205ENST00000465727 RRP1P56182 461 aaKnown RBP26.36■■□□□ 1.81
SDF4-205ENST00000465727 MYBBP1AQ9BQG0 1328 aaKnown RBP26.32■■□□□ 1.8
SDF4-205ENST00000465727 RALBP1Q15311 655 aa26.32■■□□□ 1.8
SDF4-205ENST00000465727 ARHGEF12Q9NZN5 1544 aa26.31■■□□□ 1.8
SDF4-205ENST00000465727 ADGRL2O95490 1459 aa26.31■■□□□ 1.8
SDF4-205ENST00000465727 E9PCH4 1651 aa26.3■■□□□ 1.8
SDF4-205ENST00000465727 ADAMTS12P58397 1594 aa26.3■■□□□ 1.8
SDF4-205ENST00000465727 ITSN2Q9NZM3 1697 aa26.3■■□□□ 1.8
SDF4-205ENST00000465727 PDE3BQ13370 1112 aa26.29■■□□□ 1.8
SDF4-205ENST00000465727 PPM1GO15355 546 aaPredicted RBP26.28■■□□□ 1.8
SDF4-205ENST00000465727 POLR3GLQ9BT43 218 aa26.28■■□□□ 1.8
SDF4-205ENST00000465727 EIF4G3O43432 1585 aaKnown RBP26.28■■□□□ 1.8
SDF4-205ENST00000465727 CROCC2H7BZ55 1655 aa26.28■■□□□ 1.8
SDF4-205ENST00000465727 PDE4AP27815 886 aa26.27■■□□□ 1.8
SDF4-205ENST00000465727 BACH2Q9BYV9 841 aa26.27■■□□□ 1.8
SDF4-205ENST00000465727 RCAN3Q9UKA8 241 aa26.26■■□□□ 1.79
SDF4-205ENST00000465727 PRKCSHP14314 528 aaPredicted RBP26.25■■□□□ 1.79
SDF4-205ENST00000465727 CAMSAP2Q08AD1 1489 aa26.24■■□□□ 1.79
SDF4-205ENST00000465727 EXOC6Q8TAG9 804 aa26.24■■□□□ 1.79
SDF4-205ENST00000465727 ZNF644Q9H582 1327 aaPredicted RBP26.23■■□□□ 1.79
SDF4-205ENST00000465727 NEFMP07197 916 aa26.22■■□□□ 1.79
SDF4-205ENST00000465727 RAPGEF6Q8TEU7 1601 aa26.22■■□□□ 1.79
SDF4-205ENST00000465727 NUP153P49790 1475 aaKnown RBP26.22■■□□□ 1.79
SDF4-205ENST00000465727 CNGB1Q14028 1251 aaPredicted RBP26.21■■□□□ 1.79
SDF4-205ENST00000465727 KIAA0556O60303 1618 aa26.2■■□□□ 1.79
SDF4-205ENST00000465727 NPM2Q86SE8 214 aaKnown RBP26.2■■□□□ 1.78
SDF4-205ENST00000465727 WASHC2CQ9Y4E1 1318 aa26.2■■□□□ 1.78
SDF4-205ENST00000465727 ZNF326Q5BKZ1 582 aaKnown RBP26.19■■□□□ 1.78
SDF4-205ENST00000465727 ZMYM4Q5VZL5 1548 aa26.19■■□□□ 1.78
SDF4-205ENST00000465727 INSRP06213 1382 aa26.19■■□□□ 1.78
SDF4-205ENST00000465727 DDRGK1Q96HY6 314 aa26.18■■□□□ 1.78
SDF4-205ENST00000465727 PKD2Q13563 968 aa26.18■■□□□ 1.78
SDF4-205ENST00000465727 CARD11Q9BXL7 1154 aa26.18■■□□□ 1.78
SDF4-205ENST00000465727 ANKRD30AQ9BXX3 1397 aa26.16■■□□□ 1.78
SDF4-205ENST00000465727 NLRP13Q86W25 1043 aa26.15■■□□□ 1.78
SDF4-205ENST00000465727 ADCY10Q96PN6 1610 aa26.15■■□□□ 1.78
SDF4-205ENST00000465727 TROQ12816 1431 aaPredicted RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms