RNA–Protein interactions for RNA: ENST00000465269.5

HDAC6-214, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,139 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-214ENST00000465269 STRCQ7RTU9 1775 aa25.72■■□□□ 1.71
HDAC6-214ENST00000465269 PLEKHD1A6NEE1 506 aa25.7■■□□□ 1.7
HDAC6-214ENST00000465269 PREX1Q8TCU6 1659 aa25.69■■□□□ 1.7
HDAC6-214ENST00000465269 CFAP74Q9C0B2 1584 aa25.69■■□□□ 1.7
HDAC6-214ENST00000465269 ARHGEF12Q9NZN5 1544 aa25.66■■□□□ 1.7
HDAC6-214ENST00000465269 MAGI2Q86UL8 1455 aa25.64■■□□□ 1.69
HDAC6-214ENST00000465269 SCAPERQ9BY12 1400 aa25.63■■□□□ 1.69
HDAC6-214ENST00000465269 DMRT2Q9Y5R5 561 aa25.59■■□□□ 1.69
HDAC6-214ENST00000465269 ATP10AO60312 1499 aa25.59■■□□□ 1.69
HDAC6-214ENST00000465269 C9orf84Q5VXU9 1444 aa25.56■■□□□ 1.68
HDAC6-214ENST00000465269 UHRF1BP1Q6BDS2 1440 aa25.56■■□□□ 1.68
HDAC6-214ENST00000465269 CDK13Q14004 1512 aaKnown RBP25.56■■□□□ 1.68
HDAC6-214ENST00000465269 PLCH2O75038 1416 aa25.51■■□□□ 1.67
HDAC6-214ENST00000465269 LTBP4Q8N2S1 1624 aa25.51■■□□□ 1.67
HDAC6-214ENST00000465269 CSRNP3Q8WYN3 585 aa25.5■■□□□ 1.67
HDAC6-214ENST00000465269 PTPRTO14522 1441 aa25.47■■□□□ 1.67
HDAC6-214ENST00000465269 AFAP1Q8N556 730 aa25.44■■□□□ 1.66
HDAC6-214ENST00000465269 SETD1BQ9UPS6 1966 aaKnown RBP25.43■■□□□ 1.66
HDAC6-214ENST00000465269 C3P01024 1663 aa25.42■■□□□ 1.66
HDAC6-214ENST00000465269 EFCAB2Q5VUJ9 269 aa25.41■■□□□ 1.66
HDAC6-214ENST00000465269 MYT1LQ9UL68 1186 aa25.41■■□□□ 1.66
HDAC6-214ENST00000465269 ATP1B4Q9UN42 357 aaPredicted RBP25.38■■□□□ 1.65
HDAC6-214ENST00000465269 DIP2CQ9Y2E4 1556 aa25.38■■□□□ 1.65
HDAC6-214ENST00000465269 MYO5CQ9NQX4 1742 aa25.37■■□□□ 1.65
HDAC6-214ENST00000465269 KIF14Q15058 1648 aa25.37■■□□□ 1.65
HDAC6-214ENST00000465269 NCOA1Q15788 1441 aa25.36■■□□□ 1.65
HDAC6-214ENST00000465269 ZNF518AQ6AHZ1 1483 aa25.35■■□□□ 1.65
HDAC6-214ENST00000465269 ABCA6Q8N139 1617 aa25.34■■□□□ 1.65
HDAC6-214ENST00000465269 UBAP1LF5GYI3 381 aa25.33■■□□□ 1.65
HDAC6-214ENST00000465269 KDM5CP41229 1560 aa25.33■■□□□ 1.65
HDAC6-214ENST00000465269 IQSEC2Q5JU85 1478 aa25.32■■□□□ 1.64
HDAC6-214ENST00000465269 ZNF335Q9H4Z2 1342 aaPredicted RBP25.32■■□□□ 1.64
HDAC6-214ENST00000465269 TRAPPC8Q9Y2L5 1435 aa25.31■■□□□ 1.64
HDAC6-214ENST00000465269 ARHGAP5Q13017 1502 aa25.31■■□□□ 1.64
HDAC6-214ENST00000465269 NCKAP5LQ9HCH0 1330 aa25.3■■□□□ 1.64
HDAC6-214ENST00000465269 CAMSAP1Q5T5Y3 1602 aa25.28■■□□□ 1.64
HDAC6-214ENST00000465269 ESF1Q9H501 851 aaKnown RBP25.28■■□□□ 1.64
HDAC6-214ENST00000465269 EHMT2Q96KQ7 1210 aa25.25■■□□□ 1.63
HDAC6-214ENST00000465269 REREQ9P2R6 1566 aa25.25■■□□□ 1.63
HDAC6-214ENST00000465269 AGLP35573 1532 aa25.2■■□□□ 1.62
HDAC6-214ENST00000465269 MLH3Q9UHC1 1453 aa25.2■■□□□ 1.62
HDAC6-214ENST00000465269 TROQ12816 1431 aaPredicted RBP25.18■■□□□ 1.62
HDAC6-214ENST00000465269 CDC42BPBQ9Y5S2 1711 aa25.17■■□□□ 1.62
HDAC6-214ENST00000465269 CDK11AQ9UQ88 783 aaPredicted RBP25.15■■□□□ 1.62
HDAC6-214ENST00000465269 SCAF1Q9H7N4 1312 aaKnown RBP25.14■■□□□ 1.62
HDAC6-214ENST00000465269 HSPA1LP34931 641 aa25.14■■□□□ 1.62
HDAC6-214ENST00000465269 MED1Q15648 1581 aaPredicted RBP25.14■■□□□ 1.61
HDAC6-214ENST00000465269 KIDINS220Q9ULH0 1771 aa25.13■■□□□ 1.61
HDAC6-214ENST00000465269 CNTLNQ9NXG0 1405 aa25.12■■□□□ 1.61
HDAC6-214ENST00000465269 ABCC1P33527 1531 aa25.12■■□□□ 1.61
HDAC6-214ENST00000465269 ZMYM3Q14202 1370 aa25.11■■□□□ 1.61
HDAC6-214ENST00000465269 PIP4K2BP78356 416 aa25.11■■□□□ 1.61
HDAC6-214ENST00000465269 LRRIQ1Q96JM4 1722 aa25.11■■□□□ 1.61
HDAC6-214ENST00000465269 NPATQ14207 1427 aa25.1■■□□□ 1.61
HDAC6-214ENST00000465269 EEA1Q15075 1411 aa25.1■■□□□ 1.61
HDAC6-214ENST00000465269 ITSN2Q9NZM3 1697 aa25.1■■□□□ 1.61
HDAC6-214ENST00000465269 FMN1Q68DA7 1419 aa25.09■■□□□ 1.61
HDAC6-214ENST00000465269 CLIP1P30622 1438 aa25.08■■□□□ 1.61
HDAC6-214ENST00000465269 ARHGAP35Q9NRY4 1499 aa25.08■■□□□ 1.6
HDAC6-214ENST00000465269 PREX2Q70Z35 1606 aa25.05■■□□□ 1.6
HDAC6-214ENST00000465269 MYO3AQ8NEV4 1616 aa25.05■■□□□ 1.6
HDAC6-214ENST00000465269 MROH2AA6NES4 1674 aa25.05■■□□□ 1.6
HDAC6-214ENST00000465269 TCOF1Q13428 1488 aaKnown RBP25.03■■□□□ 1.6
HDAC6-214ENST00000465269 CLTCQ00610 1675 aaKnown RBP25.03■■□□□ 1.6
HDAC6-214ENST00000465269 SUPT6HQ7KZ85 1726 aaKnown RBP25.03■■□□□ 1.6
HDAC6-214ENST00000465269 PKD2Q13563 968 aa25.02■■□□□ 1.6
HDAC6-214ENST00000465269 PPP6R1Q9UPN7 881 aa25.02■■□□□ 1.6
HDAC6-214ENST00000465269 CEP170BQ9Y4F5 1589 aaPredicted RBP25.01■■□□□ 1.59
HDAC6-214ENST00000465269 ZNF142P52746 1687 aaPredicted RBP25.01■■□□□ 1.59
HDAC6-214ENST00000465269 UBTFP17480 764 aaKnown RBP25.01■■□□□ 1.59
HDAC6-214ENST00000465269 PLA2R1Q13018 1463 aa25.01■■□□□ 1.59
HDAC6-214ENST00000465269 ZNF777Q9ULD5 760 aaPredicted RBP25■■□□□ 1.59
HDAC6-214ENST00000465269 SAMD9LQ8IVG5 1584 aa25■■□□□ 1.59
HDAC6-214ENST00000465269 PTPRKQ15262 1439 aa24.99■■□□□ 1.59
HDAC6-214ENST00000465269 SENP3Q9H4L4 574 aaPredicted RBP24.97■■□□□ 1.59
HDAC6-214ENST00000465269 CDC42BPAQ5VT25 1732 aa24.95■■□□□ 1.58
HDAC6-214ENST00000465269 SPAG9O60271 1321 aaKnown RBP24.94■■□□□ 1.58
HDAC6-214ENST00000465269 HNRNPMP52272 730 aaKnown RBP eCLIP24.94■■□□□ 1.58
HDAC6-214ENST00000465269 GGT6Q6P531 493 aa24.94■■□□□ 1.58
HDAC6-214ENST00000465269 PHF23Q9BUL5 403 aaPredicted RBP24.94■■□□□ 1.58
HDAC6-214ENST00000465269 SYCP2Q9BX26 1530 aa24.93■■□□□ 1.58
HDAC6-214ENST00000465269 TOM1O60784 492 aa24.9■■□□□ 1.58
HDAC6-214ENST00000465269 DNMT1P26358 1616 aaKnown RBP24.87■■□□□ 1.57
HDAC6-214ENST00000465269 PLXNC1O60486 1568 aa24.87■■□□□ 1.57
HDAC6-214ENST00000465269 ATP7AQ04656 1500 aa24.86■■□□□ 1.57
HDAC6-214ENST00000465269 NEURL4Q96JN8 1562 aa24.86■■□□□ 1.57
HDAC6-214ENST00000465269 A2MP01023 1474 aa24.86■■□□□ 1.57
HDAC6-214ENST00000465269 ALKQ9UM73 1620 aa24.86■■□□□ 1.57
HDAC6-214ENST00000465269 A2ML1A8K2U0 1454 aa24.85■■□□□ 1.57
HDAC6-214ENST00000465269 SHANK2Q9UPX8 1470 aa24.85■■□□□ 1.57
HDAC6-214ENST00000465269 CPS1P31327 1500 aa24.82■■□□□ 1.56
HDAC6-214ENST00000465269 INO80Q9ULG1 1556 aaPredicted RBP24.82■■□□□ 1.56
HDAC6-214ENST00000465269 FBXO31Q5XUX0 539 aaPredicted RBP24.81■■□□□ 1.56
HDAC6-214ENST00000465269 POLR1AO95602 1720 aaPredicted RBP24.8■■□□□ 1.56
HDAC6-214ENST00000465269 GPATCH8Q9UKJ3 1502 aaKnown RBP24.8■■□□□ 1.56
HDAC6-214ENST00000465269 CASKIN1Q8WXD9 1431 aa24.78■■□□□ 1.56
HDAC6-214ENST00000465269 CCDC18Q5T9S5 1454 aa24.78■■□□□ 1.56
HDAC6-214ENST00000465269 VWDEQ8N2E2 1590 aa24.77■■□□□ 1.56
HDAC6-214ENST00000465269 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.75■■□□□ 1.55
HDAC6-214ENST00000465269 TNRQ92752 1358 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms