RNA–Protein interactions for RNA: ENST00000465269.5

HDAC6-214, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,139 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-214ENST00000465269 NISCHQ9Y2I1 1504 aa38.68■■■■□ 3.78
HDAC6-214ENST00000465269 ABCC9O60706 1549 aa35.98■■■■□ 3.35
HDAC6-214ENST00000465269 CCDC180Q9P1Z9 1646 aa34.94■■■■□ 3.18
HDAC6-214ENST00000465269 DNAJC5BQ9UF47 199 aa34.56■■■■□ 3.12
HDAC6-214ENST00000465269 RB1CC1Q8TDY2 1594 aa33.7■■■□□ 2.99
HDAC6-214ENST00000465269 PABPN1Q86U42 306 aaKnown RBP eCLIP33.44■■■□□ 2.94
HDAC6-214ENST00000465269 NACADO15069 1562 aa33.24■■■□□ 2.91
HDAC6-214ENST00000465269 DCAF8L2P0C7V8 631 aa33.18■■■□□ 2.9
HDAC6-214ENST00000465269 UNC13AQ9UPW8 1703 aa33.03■■■□□ 2.88
HDAC6-214ENST00000465269 BICRAQ9NZM4 1560 aa32.87■■■□□ 2.85
HDAC6-214ENST00000465269 CECR2Q9BXF3 1484 aa32.42■■■□□ 2.78
HDAC6-214ENST00000465269 MYO15BQ96JP2 1530 aa32.42■■■□□ 2.78
HDAC6-214ENST00000465269 CC2D2AQ9P2K1 1620 aa32.38■■■□□ 2.77
HDAC6-214ENST00000465269 DNAJC5Q9H3Z4 198 aa32.16■■■□□ 2.74
HDAC6-214ENST00000465269 EIF4G1Q04637 1599 aaKnown RBP32.09■■■□□ 2.73
HDAC6-214ENST00000465269 SHROOM4Q9ULL8 1493 aa32.07■■■□□ 2.72
HDAC6-214ENST00000465269 SCRIBQ14160 1630 aa32■■■□□ 2.71
HDAC6-214ENST00000465269 ZCCHC6Q5VYS8 1495 aaKnown RBP31.87■■■□□ 2.69
HDAC6-214ENST00000465269 DCAF1Q9Y4B6 1507 aa31.75■■■□□ 2.67
HDAC6-214ENST00000465269 CUX2O14529 1486 aa31.15■■■□□ 2.58
HDAC6-214ENST00000465269 ERCC6Q03468 1493 aa31.04■■■□□ 2.56
HDAC6-214ENST00000465269 NCAPD3P42695 1498 aa30.74■■■□□ 2.51
HDAC6-214ENST00000465269 NESP48681 1621 aa30.71■■■□□ 2.51
HDAC6-214ENST00000465269 ATAD2BQ9ULI0 1458 aa30.6■■■□□ 2.49
HDAC6-214ENST00000465269 TRIM41Q8WV44 630 aa30.57■■■□□ 2.48
HDAC6-214ENST00000465269 THOC2Q8NI27 1593 aaKnown RBP30.45■■■□□ 2.46
HDAC6-214ENST00000465269 HMGXB3Q12766 1538 aa30.41■■■□□ 2.46
HDAC6-214ENST00000465269 SMARCA2P51531 1590 aa30.37■■■□□ 2.45
HDAC6-214ENST00000465269 SMARCA4P51532 1647 aa30.35■■■□□ 2.45
HDAC6-214ENST00000465269 BAZ1BQ9UIG0 1483 aaKnown RBP30.25■■■□□ 2.43
HDAC6-214ENST00000465269 KIF21AQ7Z4S6 1674 aa30.2■■■□□ 2.43
HDAC6-214ENST00000465269 LAMC3Q9Y6N6 1575 aa30.15■■■□□ 2.42
HDAC6-214ENST00000465269 PDS5BQ9NTI5 1447 aa30.02■■■□□ 2.4
HDAC6-214ENST00000465269 BAZ1AQ9NRL2 1556 aaPredicted RBP30.02■■■□□ 2.4
HDAC6-214ENST00000465269 PEG3Q9GZU2 1588 aa29.97■■■□□ 2.39
HDAC6-214ENST00000465269 MROH2BQ7Z745 1585 aa29.88■■■□□ 2.37
HDAC6-214ENST00000465269 MRC2Q9UBG0 1479 aa29.87■■■□□ 2.37
HDAC6-214ENST00000465269 CADPSQ9ULU8 1353 aa29.8■■■□□ 2.36
HDAC6-214ENST00000465269 WDR62O43379 1518 aa29.8■■■□□ 2.36
HDAC6-214ENST00000465269 OSCARQ8IYS5 282 aa29.66■■■□□ 2.34
HDAC6-214ENST00000465269 CEP164Q9UPV0 1460 aa29.58■■■□□ 2.33
HDAC6-214ENST00000465269 FANCD2Q9BXW9 1451 aa29.51■■■□□ 2.31
HDAC6-214ENST00000465269 WIZO95785 1651 aa29.49■■■□□ 2.31
HDAC6-214ENST00000465269 RIMBP3CA6NJZ7 1639 aa29.42■■■□□ 2.3
HDAC6-214ENST00000465269 RIMBP3BA6NNM3 1639 aa29.42■■■□□ 2.3
HDAC6-214ENST00000465269 RIMBP3Q9UFD9 1639 aa29.42■■■□□ 2.3
HDAC6-214ENST00000465269 URB2Q14146 1524 aaKnown RBP29.36■■■□□ 2.29
HDAC6-214ENST00000465269 CFTRP13569 1480 aa29.29■■■□□ 2.28
HDAC6-214ENST00000465269 ARHGEF11O15085 1522 aa29.24■■■□□ 2.27
HDAC6-214ENST00000465269 ZNF608Q9ULD9 1512 aaPredicted RBP29.18■■■□□ 2.26
HDAC6-214ENST00000465269 CYB5RLQ6IPT4 315 aa29.14■■■□□ 2.26
HDAC6-214ENST00000465269 TRHP20396 242 aaPredicted RBP29.07■■■□□ 2.24
HDAC6-214ENST00000465269 IFT140Q96RY7 1462 aa28.98■■■□□ 2.23
HDAC6-214ENST00000465269 TOP2AP11388 1531 aaKnown RBP28.95■■■□□ 2.23
HDAC6-214ENST00000465269 ARAP1Q96P48 1450 aa28.93■■■□□ 2.22
HDAC6-214ENST00000465269 RSF1Q96T23 1441 aaPredicted RBP28.93■■■□□ 2.22
HDAC6-214ENST00000465269 EIF4G3O43432 1585 aaKnown RBP28.89■■■□□ 2.22
HDAC6-214ENST00000465269 TOPBP1Q92547 1522 aa28.86■■■□□ 2.21
HDAC6-214ENST00000465269 PRDM2Q13029 1718 aa28.85■■■□□ 2.21
HDAC6-214ENST00000465269 CHD1O14646 1710 aa28.84■■■□□ 2.21
HDAC6-214ENST00000465269 AQRO60306 1485 aaKnown RBP eCLIP28.8■■■□□ 2.22e-14■■■■■ 33.6
HDAC6-214ENST00000465269 FBLN2P98095 1184 aa28.8■■■□□ 2.2
HDAC6-214ENST00000465269 AEBP2Q6ZN18 517 aaPredicted RBP28.76■■■□□ 2.19
HDAC6-214ENST00000465269 CCDC88BA6NC98 1476 aa28.72■■■□□ 2.19
HDAC6-214ENST00000465269 TARBP1Q13395 1621 aaKnown RBP28.66■■■□□ 2.18
HDAC6-214ENST00000465269 DNMBPQ6XZF7 1577 aa28.63■■■□□ 2.17
HDAC6-214ENST00000465269 ABCC8Q09428 1581 aa28.57■■■□□ 2.16
HDAC6-214ENST00000465269 POLA1P09884 1462 aaPredicted RBP28.52■■■□□ 2.16
HDAC6-214ENST00000465269 RAD54L2Q9Y4B4 1467 aa28.52■■■□□ 2.16
HDAC6-214ENST00000465269 TDRD9Q8NDG6 1382 aaKnown RBP28.5■■■□□ 2.15
HDAC6-214ENST00000465269 CLASP1Q7Z460 1538 aa28.46■■■□□ 2.15
HDAC6-214ENST00000465269 SNAPC4Q5SXM2 1469 aa28.44■■■□□ 2.14
HDAC6-214ENST00000465269 SOGA1O94964 1423 aa28.36■■■□□ 2.13
HDAC6-214ENST00000465269 CHMP7Q8WUX9 453 aaPredicted RBP28.35■■■□□ 2.13
HDAC6-214ENST00000465269 SYNJ1O43426 1573 aa28.31■■■□□ 2.12
HDAC6-214ENST00000465269 GAPVD1Q14C86 1478 aa28.24■■■□□ 2.11
HDAC6-214ENST00000465269 FGD5Q6ZNL6 1462 aa28.24■■■□□ 2.11
HDAC6-214ENST00000465269 MAGI1Q96QZ7 1491 aaPredicted RBP28.21■■■□□ 2.11
HDAC6-214ENST00000465269 GRIN2BQ13224 1484 aa28.17■■■□□ 2.1
HDAC6-214ENST00000465269 SYNJ2O15056 1496 aa28.16■■■□□ 2.1
HDAC6-214ENST00000465269 CUX1P39880 1505 aa28.11■■■□□ 2.09
HDAC6-214ENST00000465269 ERCC6L2Q5T890 1561 aa28.11■■■□□ 2.09
HDAC6-214ENST00000465269 WDR97A6NE52 1622 aa28.1■■■□□ 2.09
HDAC6-214ENST00000465269 PBRM1Q86U86 1689 aa28.03■■■□□ 2.08
HDAC6-214ENST00000465269 CEP170Q5SW79 1584 aa27.86■■■□□ 2.05
HDAC6-214ENST00000465269 ABCA5Q8WWZ7 1642 aa27.85■■■□□ 2.05
HDAC6-214ENST00000465269 KIF13AQ9H1H9 1805 aa27.84■■■□□ 2.05
HDAC6-214ENST00000465269 GRIN2AQ12879 1464 aa27.83■■■□□ 2.05
HDAC6-214ENST00000465269 ABCA10Q8WWZ4 1543 aa27.8■■■□□ 2.04
HDAC6-214ENST00000465269 NUP160Q12769 1436 aa27.75■■■□□ 2.03
HDAC6-214ENST00000465269 ADAMTS12P58397 1594 aa27.73■■■□□ 2.03
HDAC6-214ENST00000465269 SHROOM2Q13796 1616 aa27.7■■■□□ 2.03
HDAC6-214ENST00000465269 ILDR1Q86SU0 546 aaPredicted RBP27.69■■■□□ 2.02
HDAC6-214ENST00000465269 KDM4FA0A1W2PPD8 638 aa27.66■■■□□ 2.02
HDAC6-214ENST00000465269 FAM69CQ0P6D2 419 aa27.65■■■□□ 2.02
HDAC6-214ENST00000465269 PRG4Q92954 1404 aaPredicted RBP27.61■■■□□ 2.01
HDAC6-214ENST00000465269 FHAD1B1AJZ9 1412 aa27.57■■■□□ 2
HDAC6-214ENST00000465269 ABCC10Q5T3U5 1492 aa27.56■■■□□ 2
HDAC6-214ENST00000465269 WRNQ14191 1432 aaPredicted RBP eCLIP27.53■■■□□ 2
HDAC6-214ENST00000465269 JPH4Q96JJ6 628 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms