RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 EFCAB2Q5VUJ9 269 aa28.03■■■□□ 2.08
CPSF4-209ENST00000465132 RIMS1Q86UR5 1692 aaKnown RBP28.02■■■□□ 2.08
CPSF4-209ENST00000465132 TROQ12816 1431 aaPredicted RBP28.01■■■□□ 2.07
CPSF4-209ENST00000465132 PCF11O94913 1555 aaKnown RBP28■■■□□ 2.07
CPSF4-209ENST00000465132 SIGLEC1Q9BZZ2 1709 aa27.99■■■□□ 2.07
CPSF4-209ENST00000465132 MYO5CQ9NQX4 1742 aa27.99■■■□□ 2.07
CPSF4-209ENST00000465132 KIF14Q15058 1648 aa27.99■■■□□ 2.07
CPSF4-209ENST00000465132 LMTK3Q96Q04 1460 aa27.98■■■□□ 2.07
CPSF4-209ENST00000465132 CLIP1P30622 1438 aa27.95■■■□□ 2.07
CPSF4-209ENST00000465132 MLECQ14165 292 aa27.93■■■□□ 2.06
CPSF4-209ENST00000465132 ATP10AO60312 1499 aa27.93■■■□□ 2.06
CPSF4-209ENST00000465132 LRRIQ1Q96JM4 1722 aa27.91■■■□□ 2.06
CPSF4-209ENST00000465132 ARHGAP5Q13017 1502 aa27.91■■■□□ 2.06
CPSF4-209ENST00000465132 PLPPR3Q6T4P5 718 aa27.9■■■□□ 2.06
CPSF4-209ENST00000465132 C9orf84Q5VXU9 1444 aa27.9■■■□□ 2.06
CPSF4-209ENST00000465132 ZNF518AQ6AHZ1 1483 aa27.89■■■□□ 2.05
CPSF4-209ENST00000465132 CASKIN1Q8WXD9 1431 aa27.88■■■□□ 2.05
CPSF4-209ENST00000465132 LOC105371045A0A1W2PR82 267 aa27.87■■■□□ 2.05
CPSF4-209ENST00000465132 AFAP1Q8N556 730 aa27.87■■■□□ 2.05
CPSF4-209ENST00000465132 ARHGEF12Q9NZN5 1544 aa27.84■■■□□ 2.05
CPSF4-209ENST00000465132 FBXO41Q8TF61 875 aa27.84■■■□□ 2.05
CPSF4-209ENST00000465132 KDM5CP41229 1560 aa27.84■■■□□ 2.05
CPSF4-209ENST00000465132 FER1L4A9Z1Z3 1794 aa27.83■■■□□ 2.05
CPSF4-209ENST00000465132 CCDC18Q5T9S5 1454 aa27.83■■■□□ 2.05
CPSF4-209ENST00000465132 HSPA2P54652 639 aa27.83■■■□□ 2.05
CPSF4-209ENST00000465132 CDC42BPBQ9Y5S2 1711 aa27.78■■■□□ 2.04
CPSF4-209ENST00000465132 MYT1LQ9UL68 1186 aa27.77■■■□□ 2.04
CPSF4-209ENST00000465132 PREX2Q70Z35 1606 aa27.76■■■□□ 2.03
CPSF4-209ENST00000465132 MLH3Q9UHC1 1453 aa27.75■■■□□ 2.03
CPSF4-209ENST00000465132 DIP2CQ9Y2E4 1556 aa27.74■■■□□ 2.03
CPSF4-209ENST00000465132 FYCO1Q9BQS8 1478 aa27.74■■■□□ 2.03
CPSF4-209ENST00000465132 CEP162Q5TB80 1403 aa27.74■■■□□ 2.03
CPSF4-209ENST00000465132 ABCC1P33527 1531 aa27.73■■■□□ 2.03
CPSF4-209ENST00000465132 TRAPPC8Q9Y2L5 1435 aa27.73■■■□□ 2.03
CPSF4-209ENST00000465132 CEBPAP49715 358 aaPredicted RBP27.71■■■□□ 2.03
CPSF4-209ENST00000465132 REREQ9P2R6 1566 aa27.71■■■□□ 2.03
CPSF4-209ENST00000465132 ABCA6Q8N139 1617 aa27.69■■■□□ 2.02
CPSF4-209ENST00000465132 ITSN2Q9NZM3 1697 aa27.66■■■□□ 2.02
CPSF4-209ENST00000465132 CDC42BPAQ5VT25 1732 aa27.65■■■□□ 2.02
CPSF4-209ENST00000465132 PREX1Q8TCU6 1659 aa27.64■■■□□ 2.02
CPSF4-209ENST00000465132 AGLP35573 1532 aa27.63■■■□□ 2.01
CPSF4-209ENST00000465132 ZNF777Q9ULD5 760 aaPredicted RBP27.6■■■□□ 2.01
CPSF4-209ENST00000465132 GPATCH8Q9UKJ3 1502 aaKnown RBP27.6■■■□□ 2.01
CPSF4-209ENST00000465132 KIDINS220Q9ULH0 1771 aa27.58■■■□□ 2.01
CPSF4-209ENST00000465132 SAMD9LQ8IVG5 1584 aa27.57■■■□□ 2
CPSF4-209ENST00000465132 UHRF1BP1Q6BDS2 1440 aa27.56■■■□□ 2
CPSF4-209ENST00000465132 ESF1Q9H501 851 aaKnown RBP27.55■■■□□ 2
CPSF4-209ENST00000465132 SYCP2Q9BX26 1530 aa27.54■■■□□ 2
CPSF4-209ENST00000465132 HNRNPMP52272 730 aaKnown RBP eCLIP27.53■■■□□ 2
CPSF4-209ENST00000465132 CERKQ8TCT0 537 aa27.53■■■□□ 2
CPSF4-209ENST00000465132 SPAG9O60271 1321 aaKnown RBP27.52■■■□□ 2
CPSF4-209ENST00000465132 C3P01024 1663 aa27.52■■■□□ 2
CPSF4-209ENST00000465132 CFDP1Q9UEE9 299 aaPredicted RBP27.51■■□□□ 1.99
CPSF4-209ENST00000465132 KIAA1107Q9UPP5 1409 aa27.5■■□□□ 1.99
CPSF4-209ENST00000465132 CCNB3Q8WWL7 1395 aa27.5■■□□□ 1.99
CPSF4-209ENST00000465132 SETD1BQ9UPS6 1966 aaKnown RBP27.5■■□□□ 1.99
CPSF4-209ENST00000465132 CNTLNQ9NXG0 1405 aa27.5■■□□□ 1.99
CPSF4-209ENST00000465132 MTUS2Q5JR59 1369 aa27.49■■□□□ 1.99
CPSF4-209ENST00000465132 DMRT2Q9Y5R5 561 aa27.49■■□□□ 1.99
CPSF4-209ENST00000465132 PLEKHH2Q8IVE3 1493 aa27.48■■□□□ 1.99
CPSF4-209ENST00000465132 STRCQ7RTU9 1775 aa27.46■■□□□ 1.99
CPSF4-209ENST00000465132 ATP7AQ04656 1500 aa27.44■■□□□ 1.98
CPSF4-209ENST00000465132 VPS8Q8N3P4 1428 aa27.41■■□□□ 1.98
CPSF4-209ENST00000465132 INO80Q9ULG1 1556 aaPredicted RBP27.41■■□□□ 1.98
CPSF4-209ENST00000465132 A2MP01023 1474 aa27.38■■□□□ 1.97
CPSF4-209ENST00000465132 PLXNC1O60486 1568 aa27.38■■□□□ 1.97
CPSF4-209ENST00000465132 ZMYM3Q14202 1370 aa27.37■■□□□ 1.97
CPSF4-209ENST00000465132 PTPRTO14522 1441 aa27.37■■□□□ 1.97
CPSF4-209ENST00000465132 TIAM1Q13009 1591 aa27.37■■□□□ 1.97
CPSF4-209ENST00000465132 SUPT6HQ7KZ85 1726 aaKnown RBP27.37■■□□□ 1.97
CPSF4-209ENST00000465132 ZNF644Q9H582 1327 aaPredicted RBP27.37■■□□□ 1.97
CPSF4-209ENST00000465132 MROH2AA6NES4 1674 aa27.36■■□□□ 1.97
CPSF4-209ENST00000465132 EHBP1L1Q8N3D4 1523 aa27.36■■□□□ 1.97
CPSF4-209ENST00000465132 NPATQ14207 1427 aa27.36■■□□□ 1.97
CPSF4-209ENST00000465132 MBD5Q9P267 1494 aa27.32■■□□□ 1.96
CPSF4-209ENST00000465132 NCOA1Q15788 1441 aa27.32■■□□□ 1.96
CPSF4-209ENST00000465132 APLP2Q06481 763 aa27.29■■□□□ 1.96
CPSF4-209ENST00000465132 GGT6Q6P531 493 aa27.29■■□□□ 1.96
CPSF4-209ENST00000465132 CLTCQ00610 1675 aaKnown RBP27.27■■□□□ 1.96
CPSF4-209ENST00000465132 ADGBQ8N7X0 1667 aa27.27■■□□□ 1.96
CPSF4-209ENST00000465132 RTEL1-TNFRSF6BF6WH68 1400 aa27.26■■□□□ 1.95
CPSF4-209ENST00000465132 PPP6R1Q9UPN7 881 aa27.25■■□□□ 1.95
CPSF4-209ENST00000465132 CAMSAP1Q5T5Y3 1602 aa27.24■■□□□ 1.95
CPSF4-209ENST00000465132 PTPRKQ15262 1439 aa27.24■■□□□ 1.95
CPSF4-209ENST00000465132 NCOA2Q15596 1464 aa27.22■■□□□ 1.95
CPSF4-209ENST00000465132 DHX29Q7Z478 1369 aaKnown RBP27.21■■□□□ 1.95
CPSF4-209ENST00000465132 LTBP4Q8N2S1 1624 aa27.19■■□□□ 1.94
CPSF4-209ENST00000465132 MAP3K1Q13233 1512 aa27.18■■□□□ 1.94
CPSF4-209ENST00000465132 MYO3AQ8NEV4 1616 aa27.18■■□□□ 1.94
CPSF4-209ENST00000465132 CCDC141Q6ZP82 1450 aa27.18■■□□□ 1.94
CPSF4-209ENST00000465132 NCKAP5LQ9HCH0 1330 aa27.17■■□□□ 1.94
CPSF4-209ENST00000465132 CAMSAP2Q08AD1 1489 aa27.17■■□□□ 1.94
CPSF4-209ENST00000465132 RSPH4AQ5TD94 716 aa27.16■■□□□ 1.94
CPSF4-209ENST00000465132 ZNF142P52746 1687 aaPredicted RBP27.16■■□□□ 1.94
CPSF4-209ENST00000465132 CEP170BQ9Y4F5 1589 aaPredicted RBP27.15■■□□□ 1.94
CPSF4-209ENST00000465132 PLA2R1Q13018 1463 aa27.14■■□□□ 1.94
CPSF4-209ENST00000465132 PKD2Q13563 968 aa27.13■■□□□ 1.93
CPSF4-209ENST00000465132 KIF3BO15066 747 aa27.12■■□□□ 1.93
CPSF4-209ENST00000465132 IQSEC2Q5JU85 1478 aa27.11■■□□□ 1.93
CPSF4-209ENST00000465132 TCOF1Q13428 1488 aaKnown RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms