RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 MYO5CQ9NQX4 1742 aa35.37■■■■□ 3.25
CPNE1-220ENST00000458038 YEATS2Q9ULM3 1422 aa35.34■■■■□ 3.25
CPNE1-220ENST00000458038 TROQ12816 1431 aaPredicted RBP35.33■■■■□ 3.25
CPNE1-220ENST00000458038 CLIP1P30622 1438 aa35.32■■■■□ 3.25
CPNE1-220ENST00000458038 KIF14Q15058 1648 aa35.32■■■■□ 3.25
CPNE1-220ENST00000458038 RIMS1Q86UR5 1692 aaKnown RBP35.32■■■■□ 3.24
CPNE1-220ENST00000458038 PCF11O94913 1555 aaKnown RBP35.3■■■■□ 3.24
CPNE1-220ENST00000458038 ATP10AO60312 1499 aa35.25■■■■□ 3.23
CPNE1-220ENST00000458038 LMTK3Q96Q04 1460 aa35.23■■■■□ 3.23
CPNE1-220ENST00000458038 ZNF518AQ6AHZ1 1483 aa35.22■■■■□ 3.23
CPNE1-220ENST00000458038 SIGLEC1Q9BZZ2 1709 aa35.21■■■■□ 3.23
CPNE1-220ENST00000458038 ARHGAP5Q13017 1502 aa35.21■■■■□ 3.23
CPNE1-220ENST00000458038 LRRIQ1Q96JM4 1722 aa35.2■■■■□ 3.23
CPNE1-220ENST00000458038 CCDC18Q5T9S5 1454 aa35.19■■■■□ 3.22
CPNE1-220ENST00000458038 C9orf84Q5VXU9 1444 aa35.19■■■■□ 3.22
CPNE1-220ENST00000458038 CASKIN1Q8WXD9 1431 aa35.19■■■■□ 3.22
CPNE1-220ENST00000458038 MLECQ14165 292 aa35.16■■■■□ 3.22
CPNE1-220ENST00000458038 FER1L4A9Z1Z3 1794 aa35.15■■■■□ 3.22
CPNE1-220ENST00000458038 KDM5CP41229 1560 aa35.12■■■■□ 3.21
CPNE1-220ENST00000458038 AFAP1Q8N556 730 aa35.11■■■■□ 3.21
CPNE1-220ENST00000458038 FBXO41Q8TF61 875 aa35.11■■■■□ 3.21
CPNE1-220ENST00000458038 CDC42BPBQ9Y5S2 1711 aa35.1■■■■□ 3.21
CPNE1-220ENST00000458038 ARHGEF12Q9NZN5 1544 aa35.1■■■■□ 3.21
CPNE1-220ENST00000458038 PLPPR3Q6T4P5 718 aa35.07■■■■□ 3.2
CPNE1-220ENST00000458038 PREX2Q70Z35 1606 aa35.05■■■■□ 3.2
CPNE1-220ENST00000458038 FYCO1Q9BQS8 1478 aa35.04■■■■□ 3.2
CPNE1-220ENST00000458038 MYT1LQ9UL68 1186 aa35.04■■■■□ 3.2
CPNE1-220ENST00000458038 MLH3Q9UHC1 1453 aa35.03■■■■□ 3.2
CPNE1-220ENST00000458038 HSPA2P54652 639 aa35.01■■■■□ 3.2
CPNE1-220ENST00000458038 REREQ9P2R6 1566 aa35■■■■□ 3.19
CPNE1-220ENST00000458038 DIP2CQ9Y2E4 1556 aa34.97■■■■□ 3.19
CPNE1-220ENST00000458038 ABCC1P33527 1531 aa34.96■■■■□ 3.19
CPNE1-220ENST00000458038 SETD1BQ9UPS6 1966 aaKnown RBP34.96■■■■□ 3.19
CPNE1-220ENST00000458038 CDC42BPAQ5VT25 1732 aa34.93■■■■□ 3.18
CPNE1-220ENST00000458038 TRAPPC8Q9Y2L5 1435 aa34.92■■■■□ 3.18
CPNE1-220ENST00000458038 ITSN2Q9NZM3 1697 aa34.92■■■■□ 3.18
CPNE1-220ENST00000458038 PREX1Q8TCU6 1659 aa34.91■■■■□ 3.18
CPNE1-220ENST00000458038 ABCA6Q8N139 1617 aa34.89■■■■□ 3.18
CPNE1-220ENST00000458038 AGLP35573 1532 aa34.89■■■■□ 3.18
CPNE1-220ENST00000458038 CEBPAP49715 358 aaPredicted RBP34.87■■■■□ 3.17
CPNE1-220ENST00000458038 ESF1Q9H501 851 aaKnown RBP34.84■■■■□ 3.17
CPNE1-220ENST00000458038 KIDINS220Q9ULH0 1771 aa34.82■■■■□ 3.17
CPNE1-220ENST00000458038 GPATCH8Q9UKJ3 1502 aaKnown RBP34.8■■■■□ 3.16
CPNE1-220ENST00000458038 ZNF777Q9ULD5 760 aaPredicted RBP34.79■■■■□ 3.16
CPNE1-220ENST00000458038 UHRF1BP1Q6BDS2 1440 aa34.79■■■■□ 3.16
CPNE1-220ENST00000458038 DMRT2Q9Y5R5 561 aa34.77■■■■□ 3.16
CPNE1-220ENST00000458038 SAMD9LQ8IVG5 1584 aa34.76■■■■□ 3.16
CPNE1-220ENST00000458038 PLEKHH2Q8IVE3 1493 aa34.75■■■■□ 3.15
CPNE1-220ENST00000458038 CNTLNQ9NXG0 1405 aa34.74■■■■□ 3.15
CPNE1-220ENST00000458038 KIAA1107Q9UPP5 1409 aa34.74■■■■□ 3.15
CPNE1-220ENST00000458038 CFDP1Q9UEE9 299 aaPredicted RBP34.73■■■■□ 3.15
CPNE1-220ENST00000458038 SPAG9O60271 1321 aaKnown RBP34.73■■■■□ 3.15
CPNE1-220ENST00000458038 C3P01024 1663 aa34.73■■■■□ 3.15
CPNE1-220ENST00000458038 MTUS2Q5JR59 1369 aa34.72■■■■□ 3.15
CPNE1-220ENST00000458038 CCNB3Q8WWL7 1395 aa34.72■■■■□ 3.15
CPNE1-220ENST00000458038 SYCP2Q9BX26 1530 aa34.71■■■■□ 3.15
CPNE1-220ENST00000458038 CERKQ8TCT0 537 aa34.71■■■■□ 3.15
CPNE1-220ENST00000458038 HNRNPMP52272 730 aaKnown RBP eCLIP34.7■■■■□ 3.151e-7■■■■□ 25.4
CPNE1-220ENST00000458038 STRCQ7RTU9 1775 aa34.64■■■■□ 3.14
CPNE1-220ENST00000458038 ATP7AQ04656 1500 aa34.61■■■■□ 3.13
CPNE1-220ENST00000458038 MROH2AA6NES4 1674 aa34.6■■■■□ 3.13
CPNE1-220ENST00000458038 INO80Q9ULG1 1556 aaPredicted RBP34.57■■■■□ 3.13
CPNE1-220ENST00000458038 NPATQ14207 1427 aa34.56■■■■□ 3.12
CPNE1-220ENST00000458038 SUPT6HQ7KZ85 1726 aaKnown RBP34.56■■■■□ 3.12
CPNE1-220ENST00000458038 EHBP1L1Q8N3D4 1523 aa34.55■■■■□ 3.12
CPNE1-220ENST00000458038 PTPRTO14522 1441 aa34.55■■■■□ 3.12
CPNE1-220ENST00000458038 A2MP01023 1474 aa34.54■■■■□ 3.12
CPNE1-220ENST00000458038 ZMYM3Q14202 1370 aa34.53■■■■□ 3.12
CPNE1-220ENST00000458038 PPP6R1Q9UPN7 881 aa34.52■■■■□ 3.12
CPNE1-220ENST00000458038 PLXNC1O60486 1568 aa34.52■■■■□ 3.12
CPNE1-220ENST00000458038 CEP162Q5TB80 1403 aa34.51■■■■□ 3.12
CPNE1-220ENST00000458038 TIAM1Q13009 1591 aa34.5■■■■□ 3.11
CPNE1-220ENST00000458038 ADGBQ8N7X0 1667 aa34.47■■■■□ 3.11
CPNE1-220ENST00000458038 RTEL1-TNFRSF6BF6WH68 1400 aa34.45■■■■□ 3.11
CPNE1-220ENST00000458038 MBD5Q9P267 1494 aa34.45■■■■□ 3.1
CPNE1-220ENST00000458038 ZNF644Q9H582 1327 aaPredicted RBP34.44■■■■□ 3.1
CPNE1-220ENST00000458038 NCOA1Q15788 1441 aa34.43■■■■□ 3.1
CPNE1-220ENST00000458038 GGT6Q6P531 493 aa34.42■■■■□ 3.1
CPNE1-220ENST00000458038 CLTCQ00610 1675 aaKnown RBP34.41■■■■□ 3.1
CPNE1-220ENST00000458038 RSPH4AQ5TD94 716 aa34.4■■■■□ 3.1
CPNE1-220ENST00000458038 DHX29Q7Z478 1369 aaKnown RBP34.35■■■■□ 3.09
CPNE1-220ENST00000458038 CAMSAP1Q5T5Y3 1602 aa34.34■■■■□ 3.09
CPNE1-220ENST00000458038 PTPRKQ15262 1439 aa34.33■■■■□ 3.09
CPNE1-220ENST00000458038 NCOA2Q15596 1464 aa34.33■■■■□ 3.09
CPNE1-220ENST00000458038 CCDC141Q6ZP82 1450 aa34.3■■■■□ 3.08
CPNE1-220ENST00000458038 ZNF142P52746 1687 aaPredicted RBP34.3■■■■□ 3.08
CPNE1-220ENST00000458038 PKD2Q13563 968 aa34.27■■■■□ 3.08
CPNE1-220ENST00000458038 LTBP4Q8N2S1 1624 aa34.26■■■■□ 3.08
CPNE1-220ENST00000458038 MYO3AQ8NEV4 1616 aa34.26■■■■□ 3.08
CPNE1-220ENST00000458038 CAMSAP2Q08AD1 1489 aa34.26■■■■□ 3.07
CPNE1-220ENST00000458038 PLA2R1Q13018 1463 aa34.26■■■■□ 3.07
CPNE1-220ENST00000458038 IQSEC2Q5JU85 1478 aa34.26■■■■□ 3.07
CPNE1-220ENST00000458038 CEP170BQ9Y4F5 1589 aaPredicted RBP34.24■■■■□ 3.07
CPNE1-220ENST00000458038 FAM135AQ9P2D6 1515 aa34.23■■■■□ 3.07
CPNE1-220ENST00000458038 KIF3BO15066 747 aa34.21■■■■□ 3.07
CPNE1-220ENST00000458038 NCKAP5LQ9HCH0 1330 aa34.21■■■■□ 3.07
CPNE1-220ENST00000458038 TSPY4P0CV99 314 aa34.2■■■■□ 3.07
CPNE1-220ENST00000458038 TSPY10P0CW01 314 aa34.2■■■■□ 3.07
CPNE1-220ENST00000458038 ARHGEF5Q12774 1597 aa34.19■■■■□ 3.06
CPNE1-220ENST00000458038 VPS8Q8N3P4 1428 aa34.19■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms