RNA–Protein interactions for RNA: ENST00000455076.1

TNRC18-208, Transcript of trinucleotide repeat containing 18, human

TSL 2

Gene TNRC18, Length 577 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNRC18-208	ENST00000455076	EFCAB2	Q5VUJ9	269 aa		32.74	■■■□□ 2.83
TNRC18-208	ENST00000455076	ARHGEF40	Q8TER5	1519 aa		32.73	■■■□□ 2.83
TNRC18-208	ENST00000455076	POGZ	Q7Z3K3	1410 aa		32.73	■■■□□ 2.83
TNRC18-208	ENST00000455076	ARHGAP5	Q13017	1502 aa		32.72	■■■□□ 2.83
TNRC18-208	ENST00000455076	SCAPER	Q9BY12	1400 aa		32.7	■■■□□ 2.83
TNRC18-208	ENST00000455076	MAGI2	Q86UL8	1455 aa		32.69	■■■□□ 2.82
TNRC18-208	ENST00000455076	CDC42BPA	Q5VT25	1732 aa		32.69	■■■□□ 2.82
TNRC18-208	ENST00000455076	VPS8	Q8N3P4	1428 aa		32.66	■■■□□ 2.82
TNRC18-208	ENST00000455076	EHBP1L1	Q8N3D4	1523 aa		32.65	■■■□□ 2.82
TNRC18-208	ENST00000455076	KDM5C	P41229	1560 aa		32.62	■■■□□ 2.81
TNRC18-208	ENST00000455076	ABCC1	P33527	1531 aa		32.61	■■■□□ 2.81
TNRC18-208	ENST00000455076	ZFYVE16	Q7Z3T8	1539 aa		32.61	■■■□□ 2.81
TNRC18-208	ENST00000455076	MTUS2	Q5JR59	1369 aa		32.61	■■■□□ 2.81
TNRC18-208	ENST00000455076	ZNF518A	Q6AHZ1	1483 aa		32.61	■■■□□ 2.81
TNRC18-208	ENST00000455076	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.6	■■■□□ 2.81
TNRC18-208	ENST00000455076	TIAM1	Q13009	1591 aa		32.55	■■■□□ 2.8
TNRC18-208	ENST00000455076	YEATS2	Q9ULM3	1422 aa		32.55	■■■□□ 2.8
TNRC18-208	ENST00000455076	ITSN2	Q9NZM3	1697 aa		32.55	■■■□□ 2.8
TNRC18-208	ENST00000455076	ADAMTSL3	P82987	1691 aa		32.53	■■■□□ 2.8
TNRC18-208	ENST00000455076	ARHGEF12	Q9NZN5	1544 aa		32.51	■■■□□ 2.8
TNRC18-208	ENST00000455076	BCORL1	Q5H9F3	1711 aa		32.51	■■■□□ 2.8
TNRC18-208	ENST00000455076	SAMD9L	Q8IVG5	1584 aa		32.5	■■■□□ 2.79
TNRC18-208	ENST00000455076	MAP3K1	Q13233	1512 aa		32.5	■■■□□ 2.79
TNRC18-208	ENST00000455076	HECW2	Q9P2P5	1572 aa		32.49	■■■□□ 2.79
TNRC18-208	ENST00000455076	CCNB3	Q8WWL7	1395 aa		32.47	■■■□□ 2.79
TNRC18-208	ENST00000455076	MLH3	Q9UHC1	1453 aa		32.47	■■■□□ 2.79
TNRC18-208	ENST00000455076	SIGLEC1	Q9BZZ2	1709 aa		32.46	■■■□□ 2.79
TNRC18-208	ENST00000455076	TRAPPC8	Q9Y2L5	1435 aa		32.44	■■■□□ 2.78
TNRC18-208	ENST00000455076	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.44	■■■□□ 2.78
TNRC18-208	ENST00000455076	KIAA1107	Q9UPP5	1409 aa		32.43	■■■□□ 2.78
TNRC18-208	ENST00000455076	ATP10A	O60312	1499 aa		32.43	■■■□□ 2.78
TNRC18-208	ENST00000455076	PLEKHH2	Q8IVE3	1493 aa		32.43	■■■□□ 2.78
TNRC18-208	ENST00000455076	AFAP1	Q8N556	730 aa		32.42	■■■□□ 2.78
TNRC18-208	ENST00000455076	C9orf84	Q5VXU9	1444 aa		32.42	■■■□□ 2.78
TNRC18-208	ENST00000455076	RERE	Q9P2R6	1566 aa		32.41	■■■□□ 2.78
TNRC18-208	ENST00000455076	SYCP2	Q9BX26	1530 aa		32.41	■■■□□ 2.78
TNRC18-208	ENST00000455076	LRRC9	Q6ZRR7	1453 aa		32.4	■■■□□ 2.78
TNRC18-208	ENST00000455076	DIP2C	Q9Y2E4	1556 aa		32.4	■■■□□ 2.78
TNRC18-208	ENST00000455076	NCOA2	Q15596	1464 aa		32.39	■■■□□ 2.78
TNRC18-208	ENST00000455076	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.38	■■■□□ 2.77
TNRC18-208	ENST00000455076	MADD	Q8WXG6	1647 aa		32.37	■■■□□ 2.77
TNRC18-208	ENST00000455076	ABCA6	Q8N139	1617 aa		32.36	■■■□□ 2.77
TNRC18-208	ENST00000455076	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.35	■■■□□ 2.77
TNRC18-208	ENST00000455076	KIDINS220	Q9ULH0	1771 aa		32.35	■■■□□ 2.77
TNRC18-208	ENST00000455076	PTPRM	P28827	1452 aa		32.32	■■■□□ 2.76
TNRC18-208	ENST00000455076	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.31	■■■□□ 2.76
TNRC18-208	ENST00000455076	INO80	Q9ULG1	1556 aa	Predicted RBP	32.27	■■■□□ 2.76
TNRC18-208	ENST00000455076	AGL	P35573	1532 aa		32.26	■■■□□ 2.76
TNRC18-208	ENST00000455076	MBD5	Q9P267	1494 aa		32.26	■■■□□ 2.75
TNRC18-208	ENST00000455076	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.23	■■■□□ 2.75
TNRC18-208	ENST00000455076	RIMS1	Q86UR5	1692 aa	Known RBP	32.23	■■■□□ 2.75
TNRC18-208	ENST00000455076	ATP7A	Q04656	1500 aa		32.22	■■■□□ 2.75
TNRC18-208	ENST00000455076	FER1L4	A9Z1Z3	1794 aa		32.2	■■■□□ 2.75
TNRC18-208	ENST00000455076	KANK4	Q5T7N3	995 aa	Predicted RBP	32.2	■■■□□ 2.75
TNRC18-208	ENST00000455076	CAMSAP2	Q08AD1	1489 aa		32.2	■■■□□ 2.75
TNRC18-208	ENST00000455076	SPAG9	O60271	1321 aa	Known RBP	32.19	■■■□□ 2.74
TNRC18-208	ENST00000455076	ZNF644	Q9H582	1327 aa	Predicted RBP	32.19	■■■□□ 2.74
TNRC18-208	ENST00000455076	MYT1L	Q9UL68	1186 aa		32.16	■■■□□ 2.74
TNRC18-208	ENST00000455076	PLXNC1	O60486	1568 aa		32.15	■■■□□ 2.74
TNRC18-208	ENST00000455076	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.13	■■■□□ 2.73
TNRC18-208	ENST00000455076	ARHGEF5	Q12774	1597 aa		32.13	■■■□□ 2.73
TNRC18-208	ENST00000455076	CCDC141	Q6ZP82	1450 aa		32.13	■■■□□ 2.73
TNRC18-208	ENST00000455076	MIA2	Q96PC5	1412 aa		32.12	■■■□□ 2.73
TNRC18-208	ENST00000455076	MYOM3	Q5VTT5	1437 aa		32.11	■■■□□ 2.73
TNRC18-208	ENST00000455076	RSPH4A	Q5TD94	716 aa		32.09	■■■□□ 2.73
TNRC18-208	ENST00000455076	ADGB	Q8N7X0	1667 aa		32.08	■■■□□ 2.73
TNRC18-208	ENST00000455076	MLEC	Q14165	292 aa		32.08	■■■□□ 2.73
TNRC18-208	ENST00000455076	APLP2	Q06481	763 aa		32.07	■■■□□ 2.72
TNRC18-208	ENST00000455076	A2M	P01023	1474 aa		32.06	■■■□□ 2.72
TNRC18-208	ENST00000455076	MAST1	Q9Y2H9	1570 aa		31.98	■■■□□ 2.71
TNRC18-208	ENST00000455076	LMTK3	Q96Q04	1460 aa		31.97	■■■□□ 2.71
TNRC18-208	ENST00000455076	CNTLN	Q9NXG0	1405 aa		31.96	■■■□□ 2.71
TNRC18-208	ENST00000455076	MROH2A	A6NES4	1674 aa		31.92	■■■□□ 2.7
TNRC18-208	ENST00000455076	DHX29	Q7Z478	1369 aa	Known RBP	31.92	■■■□□ 2.7
TNRC18-208	ENST00000455076	TCOF1	Q13428	1488 aa	Known RBP	31.91	■■■□□ 2.7
TNRC18-208	ENST00000455076	PTPN23	Q9H3S7	1636 aa		31.9	■■■□□ 2.7
TNRC18-208	ENST00000455076	C3	P01024	1663 aa		31.9	■■■□□ 2.7
TNRC18-208	ENST00000455076	FGD6	Q6ZV73	1430 aa		31.89	■■■□□ 2.7
TNRC18-208	ENST00000455076	TSPY4	P0CV99	314 aa		31.86	■■■□□ 2.69
TNRC18-208	ENST00000455076	TSPY10	P0CW01	314 aa		31.86	■■■□□ 2.69
TNRC18-208	ENST00000455076	PREX1	Q8TCU6	1659 aa		31.86	■■■□□ 2.69
TNRC18-208	ENST00000455076	SHANK2	Q9UPX8	1470 aa		31.85	■■■□□ 2.69
TNRC18-208	ENST00000455076	CROCC2	H7BZ55	1655 aa		31.84	■■■□□ 2.69
TNRC18-208	ENST00000455076	SETD1B	Q9UPS6	1966 aa	Known RBP	31.83	■■■□□ 2.69
TNRC18-208	ENST00000455076	PPP6R1	Q9UPN7	881 aa		31.83	■■■□□ 2.69
TNRC18-208	ENST00000455076	FAM135A	Q9P2D6	1515 aa		31.83	■■■□□ 2.69
TNRC18-208	ENST00000455076	ESF1	Q9H501	851 aa	Known RBP	31.81	■■■□□ 2.68
TNRC18-208	ENST00000455076	DNMT1	P26358	1616 aa	Known RBP	31.8	■■■□□ 2.68
TNRC18-208	ENST00000455076	CEBPA	P49715	358 aa	Predicted RBP	31.8	■■■□□ 2.68
TNRC18-208	ENST00000455076	ABCC5	O15440	1437 aa		31.78	■■■□□ 2.68
TNRC18-208	ENST00000455076	CLTC	Q00610	1675 aa	Known RBP	31.78	■■■□□ 2.68
TNRC18-208	ENST00000455076	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.76	■■■□□ 2.67
TNRC18-208	ENST00000455076	PLPPR3	Q6T4P5	718 aa		31.76	■■■□□ 2.67
TNRC18-208	ENST00000455076	NPAT	Q14207	1427 aa		31.75	■■■□□ 2.67
TNRC18-208	ENST00000455076	DAPK1	P53355	1430 aa		31.75	■■■□□ 2.67
TNRC18-208	ENST00000455076	ZMYM3	Q14202	1370 aa		31.73	■■■□□ 2.67
TNRC18-208	ENST00000455076	RNF17	Q9BXT8	1623 aa	Known RBP	31.73	■■■□□ 2.67
TNRC18-208	ENST00000455076	GGT6	Q6P531	493 aa		31.72	■■■□□ 2.67
TNRC18-208	ENST00000455076	UHRF1BP1	Q6BDS2	1440 aa		31.71	■■■□□ 2.67
TNRC18-208	ENST00000455076	DUOX2	Q9NRD8	1548 aa		31.7	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms