RNA–Protein interactions for RNA: ENST00000453615.1

PSMD4-206, Transcript of proteasome 26S subunit, non-ATPase 4, human

TSL 3

Gene PSMD4, Length 371 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMD4-206	ENST00000453615	PTPRM	P28827	1452 aa		13.86	□□□□□ -0.19
PSMD4-206	ENST00000453615	FYCO1	Q9BQS8	1478 aa		13.86	□□□□□ -0.19
PSMD4-206	ENST00000453615	ARHGAP5	Q13017	1502 aa		13.85	□□□□□ -0.19
PSMD4-206	ENST00000453615	MYO5C	Q9NQX4	1742 aa		13.84	□□□□□ -0.19
PSMD4-206	ENST00000453615	PCF11	O94913	1555 aa	Known RBP	13.84	□□□□□ -0.19
PSMD4-206	ENST00000453615	ZNF518A	Q6AHZ1	1483 aa		13.84	□□□□□ -0.19
PSMD4-206	ENST00000453615	ADAMTSL3	P82987	1691 aa		13.84	□□□□□ -0.19
PSMD4-206	ENST00000453615	YEATS2	Q9ULM3	1422 aa		13.83	□□□□□ -0.2
PSMD4-206	ENST00000453615	MYT1L	Q9UL68	1186 aa		13.83	□□□□□ -0.2
PSMD4-206	ENST00000453615	BCORL1	Q5H9F3	1711 aa		13.83	□□□□□ -0.2
PSMD4-206	ENST00000453615	ATP10A	O60312	1499 aa		13.8	□□□□□ -0.2
PSMD4-206	ENST00000453615	MADD	Q8WXG6	1647 aa		13.79	□□□□□ -0.2
PSMD4-206	ENST00000453615	C9orf84	Q5VXU9	1444 aa		13.79	□□□□□ -0.2
PSMD4-206	ENST00000453615	MLEC	Q14165	292 aa		13.78	□□□□□ -0.2
PSMD4-206	ENST00000453615	AFAP1	Q8N556	730 aa		13.78	□□□□□ -0.2
PSMD4-206	ENST00000453615	LRRIQ1	Q96JM4	1722 aa		13.76	□□□□□ -0.21
PSMD4-206	ENST00000453615	MTUS2	Q5JR59	1369 aa		13.75	□□□□□ -0.21
PSMD4-206	ENST00000453615	PREX2	Q70Z35	1606 aa		13.75	□□□□□ -0.21
PSMD4-206	ENST00000453615	KDM5C	P41229	1560 aa		13.75	□□□□□ -0.21
PSMD4-206	ENST00000453615	PLPPR3	Q6T4P5	718 aa		13.74	□□□□□ -0.21
PSMD4-206	ENST00000453615	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.74	□□□□□ -0.21
PSMD4-206	ENST00000453615	RIMS1	Q86UR5	1692 aa	Known RBP	13.74	□□□□□ -0.21
PSMD4-206	ENST00000453615	MLH3	Q9UHC1	1453 aa		13.74	□□□□□ -0.21
PSMD4-206	ENST00000453615	CCNB3	Q8WWL7	1395 aa		13.73	□□□□□ -0.21
PSMD4-206	ENST00000453615	ABCC1	P33527	1531 aa		13.73	□□□□□ -0.21
PSMD4-206	ENST00000453615	CEP162	Q5TB80	1403 aa		13.73	□□□□□ -0.21
PSMD4-206	ENST00000453615	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.72	□□□□□ -0.21
PSMD4-206	ENST00000453615	CDC42BPB	Q9Y5S2	1711 aa		13.71	□□□□□ -0.21
PSMD4-206	ENST00000453615	ESF1	Q9H501	851 aa	Known RBP	13.71	□□□□□ -0.21
PSMD4-206	ENST00000453615	TRAPPC8	Q9Y2L5	1435 aa		13.71	□□□□□ -0.22
PSMD4-206	ENST00000453615	ARHGEF12	Q9NZN5	1544 aa		13.7	□□□□□ -0.22
PSMD4-206	ENST00000453615	PLEKHH2	Q8IVE3	1493 aa		13.7	□□□□□ -0.22
PSMD4-206	ENST00000453615	LMTK3	Q96Q04	1460 aa		13.7	□□□□□ -0.22
PSMD4-206	ENST00000453615	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.69	□□□□□ -0.22
PSMD4-206	ENST00000453615	SPAG9	O60271	1321 aa	Known RBP	13.69	□□□□□ -0.22
PSMD4-206	ENST00000453615	ILDR1	Q86SU0	546 aa	Predicted RBP	13.69	□□□□□ -0.22
PSMD4-206	ENST00000453615	RERE	Q9P2R6	1566 aa		13.68	□□□□□ -0.22
PSMD4-206	ENST00000453615	DIP2C	Q9Y2E4	1556 aa		13.68	□□□□□ -0.22
PSMD4-206	ENST00000453615	FER1L4	A9Z1Z3	1794 aa		13.68	□□□□□ -0.22
PSMD4-206	ENST00000453615	SIGLEC1	Q9BZZ2	1709 aa		13.67	□□□□□ -0.22
PSMD4-206	ENST00000453615	KIAA1107	Q9UPP5	1409 aa		13.67	□□□□□ -0.22
PSMD4-206	ENST00000453615	CDC42BPA	Q5VT25	1732 aa		13.67	□□□□□ -0.22
PSMD4-206	ENST00000453615	ITSN2	Q9NZM3	1697 aa		13.66	□□□□□ -0.22
PSMD4-206	ENST00000453615	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
PSMD4-206	ENST00000453615	AGL	P35573	1532 aa		13.65	□□□□□ -0.22
PSMD4-206	ENST00000453615	EHBP1L1	Q8N3D4	1523 aa		13.65	□□□□□ -0.22
PSMD4-206	ENST00000453615	SYCP2	Q9BX26	1530 aa		13.65	□□□□□ -0.22
PSMD4-206	ENST00000453615	ABCA6	Q8N139	1617 aa		13.64	□□□□□ -0.23
PSMD4-206	ENST00000453615	SAMD9L	Q8IVG5	1584 aa		13.64	□□□□□ -0.23
PSMD4-206	ENST00000453615	HSPA2	P54652	639 aa		13.64	□□□□□ -0.23
PSMD4-206	ENST00000453615	CEBPA	P49715	358 aa	Predicted RBP	13.63	□□□□□ -0.23
PSMD4-206	ENST00000453615	CNTLN	Q9NXG0	1405 aa		13.63	□□□□□ -0.23
PSMD4-206	ENST00000453615	UHRF1BP1	Q6BDS2	1440 aa		13.6	□□□□□ -0.23
PSMD4-206	ENST00000453615	KIDINS220	Q9ULH0	1771 aa		13.6	□□□□□ -0.23
PSMD4-206	ENST00000453615	ATP7A	Q04656	1500 aa		13.59	□□□□□ -0.23
PSMD4-206	ENST00000453615	TIAM1	Q13009	1591 aa		13.59	□□□□□ -0.23
PSMD4-206	ENST00000453615	VPS8	Q8N3P4	1428 aa		13.58	□□□□□ -0.24
PSMD4-206	ENST00000453615	LOC105371045	A0A1W2PR82	267 aa		13.58	□□□□□ -0.24
PSMD4-206	ENST00000453615	FBXO41	Q8TF61	875 aa		13.58	□□□□□ -0.24
PSMD4-206	ENST00000453615	DMRT2	Q9Y5R5	561 aa		13.58	□□□□□ -0.24
PSMD4-206	ENST00000453615	ZNF644	Q9H582	1327 aa	Predicted RBP	13.58	□□□□□ -0.24
PSMD4-206	ENST00000453615	PREX1	Q8TCU6	1659 aa		13.57	□□□□□ -0.24
PSMD4-206	ENST00000453615	A2M	P01023	1474 aa		13.57	□□□□□ -0.24
PSMD4-206	ENST00000453615	RSPH4A	Q5TD94	716 aa		13.57	□□□□□ -0.24
PSMD4-206	ENST00000453615	NCOA2	Q15596	1464 aa		13.56	□□□□□ -0.24
PSMD4-206	ENST00000453615	INO80	Q9ULG1	1556 aa	Predicted RBP	13.56	□□□□□ -0.24
PSMD4-206	ENST00000453615	PPP6R1	Q9UPN7	881 aa		13.55	□□□□□ -0.24
PSMD4-206	ENST00000453615	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.55	□□□□□ -0.24
PSMD4-206	ENST00000453615	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.55	□□□□□ -0.24
PSMD4-206	ENST00000453615	GGT6	Q6P531	493 aa		13.54	□□□□□ -0.24
PSMD4-206	ENST00000453615	MBD5	Q9P267	1494 aa		13.54	□□□□□ -0.24
PSMD4-206	ENST00000453615	SETD1B	Q9UPS6	1966 aa	Known RBP	13.53	□□□□□ -0.24
PSMD4-206	ENST00000453615	NPAT	Q14207	1427 aa		13.53	□□□□□ -0.24
PSMD4-206	ENST00000453615	CCDC141	Q6ZP82	1450 aa		13.53	□□□□□ -0.24
PSMD4-206	ENST00000453615	TSPY4	P0CV99	314 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	TSPY10	P0CW01	314 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	ZMYM3	Q14202	1370 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	CAMSAP2	Q08AD1	1489 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	LRRC9	Q6ZRR7	1453 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	PLXNC1	O60486	1568 aa		13.52	□□□□□ -0.25
PSMD4-206	ENST00000453615	C3	P01024	1663 aa		13.51	□□□□□ -0.25
PSMD4-206	ENST00000453615	APLP2	Q06481	763 aa		13.51	□□□□□ -0.25
PSMD4-206	ENST00000453615	MAP3K1	Q13233	1512 aa		13.5	□□□□□ -0.25
PSMD4-206	ENST00000453615	DHX29	Q7Z478	1369 aa	Known RBP	13.5	□□□□□ -0.25
PSMD4-206	ENST00000453615	ADGB	Q8N7X0	1667 aa		13.5	□□□□□ -0.25
PSMD4-206	ENST00000453615	MROH2A	A6NES4	1674 aa		13.49	□□□□□ -0.25
PSMD4-206	ENST00000453615	CERK	Q8TCT0	537 aa		13.48	□□□□□ -0.25
PSMD4-206	ENST00000453615	KIF3B	O15066	747 aa		13.47	□□□□□ -0.25
PSMD4-206	ENST00000453615	PTPRT	O14522	1441 aa		13.46	□□□□□ -0.26
PSMD4-206	ENST00000453615	ARHGEF5	Q12774	1597 aa		13.45	□□□□□ -0.26
PSMD4-206	ENST00000453615	KANK4	Q5T7N3	995 aa	Predicted RBP	13.45	□□□□□ -0.26
PSMD4-206	ENST00000453615	MYOM3	Q5VTT5	1437 aa		13.45	□□□□□ -0.26
PSMD4-206	ENST00000453615	MIA2	Q96PC5	1412 aa		13.45	□□□□□ -0.26
PSMD4-206	ENST00000453615	CLTC	Q00610	1675 aa	Known RBP	13.44	□□□□□ -0.26
PSMD4-206	ENST00000453615	PTPRK	Q15262	1439 aa		13.44	□□□□□ -0.26
PSMD4-206	ENST00000453615	NCOA1	Q15788	1441 aa		13.44	□□□□□ -0.26
PSMD4-206	ENST00000453615	FAM135A	Q9P2D6	1515 aa		13.44	□□□□□ -0.26
PSMD4-206	ENST00000453615	WASHC2C	Q9Y4E1	1318 aa		13.43	□□□□□ -0.26
PSMD4-206	ENST00000453615	KDM5D	Q9BY66	1539 aa		13.41	□□□□□ -0.26
PSMD4-206	ENST00000453615	PKD2	Q13563	968 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms