RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 SALL2Q9Y467 1007 aaPredicted RBP2.83□□□□□ -1.96
USP53-202ENST00000450251 HSP90B1P14625 803 aaKnown RBP2.83□□□□□ -1.96
USP53-202ENST00000450251 GBP4Q96PP9 640 aa2.83□□□□□ -1.96
USP53-202ENST00000450251 ITGAEP38570 1179 aa2.83□□□□□ -1.96
USP53-202ENST00000450251 AXDND1Q5T1B0 1012 aaPredicted RBP2.83□□□□□ -1.96
USP53-202ENST00000450251 MRC2Q9UBG0 1479 aa2.83□□□□□ -1.96
USP53-202ENST00000450251 NESP48681 1621 aa2.83□□□□□ -1.96
USP53-202ENST00000450251 TNIKQ9UKE5 1360 aa2.82□□□□□ -1.96
USP53-202ENST00000450251 KIAA2012Q0VF49 1180 aa2.82□□□□□ -1.96
USP53-202ENST00000450251 PDCL3Q9H2J4 239 aa2.82□□□□□ -1.96
USP53-202ENST00000450251 CEP162Q5TB80 1403 aa2.82□□□□□ -1.96
USP53-202ENST00000450251 NRDCO43847 1150 aa2.82□□□□□ -1.96
USP53-202ENST00000450251 C11orf95C9JLR9 678 aaPredicted RBP2.81□□□□□ -1.96
USP53-202ENST00000450251 CALD1Q05682 793 aaKnown RBP2.81□□□□□ -1.96
USP53-202ENST00000450251 SCRIBQ14160 1630 aa2.81□□□□□ -1.96
USP53-202ENST00000450251 ARID3AQ99856 593 aa2.81□□□□□ -1.96
USP53-202ENST00000450251 CWC15Q9P013 229 aaKnown RBP2.81□□□□□ -1.96
USP53-202ENST00000450251 SYAP1Q96A49 352 aaPredicted RBP2.81□□□□□ -1.96
USP53-202ENST00000450251 IFT140Q96RY7 1462 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 CEP164Q9UPV0 1460 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 TEX35Q5T0J7 233 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 HSCBQ8IWL3 235 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 KIF3AQ9Y496 699 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 DCAF8L1A6NGE4 600 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 MYH16Q9H6N6 1097 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 PHF14O94880 888 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 BRD2P25440 801 aaKnown RBP2.8□□□□□ -1.96
USP53-202ENST00000450251 MRE11P49959 708 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 ZNF771Q7L3S4 317 aaPredicted RBP2.8□□□□□ -1.96
USP53-202ENST00000450251 TRIM52Q96A61 297 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 PHLDB1Q86UU1 1377 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 DDX10Q13206 875 aaKnown RBP2.8□□□□□ -1.96
USP53-202ENST00000450251 PROM2Q8N271 834 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 ZMYND15Q9H091 742 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 MRS2Q9HD23 443 aa2.8□□□□□ -1.96
USP53-202ENST00000450251 TPM3P06753 285 aa2.79□□□□□ -1.96
USP53-202ENST00000450251 HMGN5P82970 282 aaKnown RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 CLIP1P30622 1438 aa2.79□□□□□ -1.96
USP53-202ENST00000450251 HTATSF1O43719 755 aaKnown RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 CHMP4BQ9H444 224 aaKnown RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 LETM1O95202 739 aaPredicted RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 GPS2Q13227 327 aa2.79□□□□□ -1.96
USP53-202ENST00000450251 SMAP1Q8IYB5 467 aaPredicted RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 PDCL2Q8N4E4 241 aa2.79□□□□□ -1.96
USP53-202ENST00000450251 DNAJC2Q99543 621 aaKnown RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 CCDC173Q0VFZ6 552 aa2.79□□□□□ -1.96
USP53-202ENST00000450251 GTPBP4Q9BZE4 634 aaKnown RBP2.79□□□□□ -1.96
USP53-202ENST00000450251 EIF3AQ14152 1382 aaKnown RBP2.78□□□□□ -1.96
USP53-202ENST00000450251 CASC1Q6TDU7 716 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 CCDC39Q9UFE4 941 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 CENPJQ9HC77 1338 aaPredicted RBP2.78□□□□□ -1.96
USP53-202ENST00000450251 IRX3P78415 501 aaPredicted RBP2.78□□□□□ -1.96
USP53-202ENST00000450251 CTR9Q6PD62 1173 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 RBM28Q9NW13 759 aaKnown RBP2.78□□□□□ -1.96
USP53-202ENST00000450251 CLGNO14967 610 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 ABCB7O75027 752 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 PDE3BQ13370 1112 aa2.78□□□□□ -1.96
USP53-202ENST00000450251 CAVIN1Q6NZI2 390 aaKnown RBP2.78□□□□□ -1.96
USP53-202ENST00000450251 MAGI1Q96QZ7 1491 aaPredicted RBP2.78□□□□□ -1.97
USP53-202ENST00000450251 ZBED9Q6R2W3 1325 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 USP8P40818 1118 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 DIAPH3Q9NSV4 1193 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 MYCNP04198 464 aaPredicted RBP2.77□□□□□ -1.97
USP53-202ENST00000450251 KTN1Q86UP2 1357 aaKnown RBP2.77□□□□□ -1.97
USP53-202ENST00000450251 HSP90AB1P08238 724 aaKnown RBP2.77□□□□□ -1.97
USP53-202ENST00000450251 TERF1P54274 439 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 EIF4G2P78344 907 aaKnown RBP eCLIP2.77□□□□□ -1.97
USP53-202ENST00000450251 FAM9BQ8IZU0 186 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 CALCOCO1Q9P1Z2 691 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 BCCIPQ9P287 314 aaKnown RBP eCLIP2.77□□□□□ -1.97
USP53-202ENST00000450251 FBXO3Q9UK99 471 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 NUDCQ9Y266 331 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 TMC1Q8TDI8 760 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 IPO4Q8TEX9 1081 aaKnown RBP2.77□□□□□ -1.97
USP53-202ENST00000450251 CLASP1Q7Z460 1538 aa2.77□□□□□ -1.97
USP53-202ENST00000450251 AAMPQ13685 434 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 POLA2Q14181 598 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 RNF20Q5VTR2 975 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 ROCK2O75116 1388 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 PRDM2Q13029 1718 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 KIF16BQ96L93 1317 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 MAPK8IP3Q9UPT6 1336 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 RBM10P98175 930 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 DHX8Q14562 1220 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 IL27Q8NEV9 243 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 MCM5P33992 734 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 FAM50AQ14320 339 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 FAM161AQ3B820 660 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 AMER1Q5JTC6 1135 aaPredicted RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 CC2D1BQ5T0F9 858 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 B4GALNT3Q6L9W6 998 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 CREBRFQ8IUR6 639 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 KIF20AO95235 890 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 IRX6P78412 446 aaPredicted RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 FGD1P98174 961 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 CENPQQ7L2Z9 268 aaPredicted RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 PABPN1Q86U42 306 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP53-202ENST00000450251 VPS8Q8N3P4 1428 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 TOP2AP11388 1531 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 DYNC1I1O14576 645 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms