RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 BICRAQ9NZM4 1560 aa21.77■■□□□ 1.08
TCOF1-206ENST00000445265 TIAM1Q13009 1591 aa21.77■■□□□ 1.07
TCOF1-206ENST00000445265 CFAP53Q96M91 514 aa21.76■■□□□ 1.07
TCOF1-206ENST00000445265 HSP90AA1P07900 732 aaKnown RBP21.76■■□□□ 1.07
TCOF1-206ENST00000445265 BECN1Q14457 450 aa21.74■■□□□ 1.07
TCOF1-206ENST00000445265 EFCAB5A4FU69 1503 aa21.74■■□□□ 1.07
TCOF1-206ENST00000445265 ZBED9Q6R2W3 1325 aa21.72■■□□□ 1.07
TCOF1-206ENST00000445265 NCOA2Q15596 1464 aa21.72■■□□□ 1.07
TCOF1-206ENST00000445265 ESF1Q9H501 851 aaKnown RBP21.71■■□□□ 1.07
TCOF1-206ENST00000445265 RCAN3Q9UKA8 241 aa21.71■■□□□ 1.07
TCOF1-206ENST00000445265 RSPH4AQ5TD94 716 aa21.71■■□□□ 1.07
TCOF1-206ENST00000445265 NLRP13Q86W25 1043 aa21.68■■□□□ 1.06
TCOF1-206ENST00000445265 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.67■■□□□ 1.06
TCOF1-206ENST00000445265 KIF15Q9NS87 1388 aa21.66■■□□□ 1.06
TCOF1-206ENST00000445265 PDE3BQ13370 1112 aa21.66■■□□□ 1.06
TCOF1-206ENST00000445265 KANK1Q14678 1352 aa21.65■■□□□ 1.06
TCOF1-206ENST00000445265 JPH4Q96JJ6 628 aa21.64■■□□□ 1.06
TCOF1-206ENST00000445265 TCERG1O14776 1098 aaKnown RBP21.64■■□□□ 1.06
TCOF1-206ENST00000445265 ANP32BQ92688 251 aaKnown RBP21.64■■□□□ 1.05
TCOF1-206ENST00000445265 CCDC7Q96M83 1385 aa21.63■■□□□ 1.05
TCOF1-206ENST00000445265 USP47Q96K76 1375 aa21.63■■□□□ 1.05
TCOF1-206ENST00000445265 LAS1LQ9Y4W2 734 aaKnown RBP21.63■■□□□ 1.05
TCOF1-206ENST00000445265 RGS3P49796 1198 aa21.62■■□□□ 1.05
TCOF1-206ENST00000445265 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.05
TCOF1-206ENST00000445265 HFM1A2PYH4 1435 aa21.62■■□□□ 1.05
TCOF1-206ENST00000445265 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
TCOF1-206ENST00000445265 CNTLNQ9NXG0 1405 aa21.61■■□□□ 1.05
TCOF1-206ENST00000445265 MYBBP1AQ9BQG0 1328 aaKnown RBP21.61■■□□□ 1.05
TCOF1-206ENST00000445265 ST20-MTHFSA0A0A6YYL1 179 aa21.6■■□□□ 1.05
TCOF1-206ENST00000445265 NEUROD2Q15784 382 aa21.6■■□□□ 1.05
TCOF1-206ENST00000445265 EFCAB2Q5VUJ9 269 aa21.59■■□□□ 1.05
TCOF1-206ENST00000445265 WASHC2AQ641Q2 1341 aa21.59■■□□□ 1.05
TCOF1-206ENST00000445265 EIF5BO60841 1220 aaKnown RBP21.58■■□□□ 1.05
TCOF1-206ENST00000445265 MYH16Q9H6N6 1097 aa21.57■■□□□ 1.04
TCOF1-206ENST00000445265 DEKP35659 375 aaKnown RBP21.56■■□□□ 1.04
TCOF1-206ENST00000445265 FTSJ3Q8IY81 847 aaKnown RBP21.56■■□□□ 1.04
TCOF1-206ENST00000445265 KIF7Q2M1P5 1343 aa21.56■■□□□ 1.04
TCOF1-206ENST00000445265 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
TCOF1-206ENST00000445265 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
TCOF1-206ENST00000445265 ARID4BQ4LE39 1312 aaPredicted RBP21.55■■□□□ 1.04
TCOF1-206ENST00000445265 FANCIQ9NVI1 1328 aa21.55■■□□□ 1.04
TCOF1-206ENST00000445265 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
TCOF1-206ENST00000445265 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
TCOF1-206ENST00000445265 FRAT1Q92837 279 aaPredicted RBP21.55■■□□□ 1.04
TCOF1-206ENST00000445265 EHBP1L1Q8N3D4 1523 aa21.54■■□□□ 1.04
TCOF1-206ENST00000445265 CCDC144AA2RUR9 1427 aa21.53■■□□□ 1.04
TCOF1-206ENST00000445265 IPO9Q96P70 1041 aaKnown RBP21.53■■□□□ 1.04
TCOF1-206ENST00000445265 MS4A1P11836 297 aa21.52■■□□□ 1.04
TCOF1-206ENST00000445265 MAPK8IP3Q9UPT6 1336 aa21.52■■□□□ 1.04
TCOF1-206ENST00000445265 ZNF644Q9H582 1327 aaPredicted RBP21.51■■□□□ 1.03
TCOF1-206ENST00000445265 UNC13AQ9UPW8 1703 aa21.51■■□□□ 1.03
TCOF1-206ENST00000445265 TNNT2P45379 298 aaPredicted RBP21.5■■□□□ 1.03
TCOF1-206ENST00000445265 MIA2Q96PC5 1412 aa21.5■■□□□ 1.03
TCOF1-206ENST00000445265 DNMBPQ6XZF7 1577 aa21.49■■□□□ 1.03
TCOF1-206ENST00000445265 AQRO60306 1485 aaKnown RBP eCLIP21.49■■□□□ 1.035e-7■■■■■ 40.3
TCOF1-206ENST00000445265 MORC1Q86VD1 984 aa21.48■■□□□ 1.03
TCOF1-206ENST00000445265 EIF3AQ14152 1382 aaKnown RBP21.47■■□□□ 1.03
TCOF1-206ENST00000445265 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
TCOF1-206ENST00000445265 ARXQ96QS3 562 aa21.46■■□□□ 1.03
TCOF1-206ENST00000445265 PCF11O94913 1555 aaKnown RBP21.45■■□□□ 1.02
TCOF1-206ENST00000445265 GOLGA2Q08379 1002 aa21.45■■□□□ 1.02
TCOF1-206ENST00000445265 NAIPQ13075 1403 aa21.44■■□□□ 1.02
TCOF1-206ENST00000445265 GRIN2BQ13224 1484 aa21.43■■□□□ 1.02
TCOF1-206ENST00000445265 NESP48681 1621 aa21.43■■□□□ 1.02
TCOF1-206ENST00000445265 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
TCOF1-206ENST00000445265 ANKRD50Q9ULJ7 1429 aa21.42■■□□□ 1.02
TCOF1-206ENST00000445265 RRP1P56182 461 aaKnown RBP21.42■■□□□ 1.02
TCOF1-206ENST00000445265 POGKQ9P215 609 aa21.41■■□□□ 1.02
TCOF1-206ENST00000445265 PANK3Q9H999 370 aa21.41■■□□□ 1.02
TCOF1-206ENST00000445265 PNNQ9H307 717 aaKnown RBP21.41■■□□□ 1.02
TCOF1-206ENST00000445265 PTPRGP23470 1445 aa21.41■■□□□ 1.02
TCOF1-206ENST00000445265 SUPT6HQ7KZ85 1726 aaKnown RBP21.4■■□□□ 1.02
TCOF1-206ENST00000445265 CHMP4BQ9H444 224 aaKnown RBP21.4■■□□□ 1.02
TCOF1-206ENST00000445265 U2SURPO15042 1029 aaKnown RBP21.39■■□□□ 1.02
TCOF1-206ENST00000445265 SPAG9O60271 1321 aaKnown RBP21.39■■□□□ 1.02
TCOF1-206ENST00000445265 CC2D2AQ9P2K1 1620 aa21.38■■□□□ 1.01
TCOF1-206ENST00000445265 HECW1Q76N89 1606 aa21.37■■□□□ 1.01
TCOF1-206ENST00000445265 PRDM2Q13029 1718 aa21.36■■□□□ 1.01
TCOF1-206ENST00000445265 GOLGA6L22H0YM25 854 aa21.35■■□□□ 1.01
TCOF1-206ENST00000445265 EXOC6Q8TAG9 804 aa21.35■■□□□ 1.01
TCOF1-206ENST00000445265 KIF3BO15066 747 aa21.34■■□□□ 1.01
TCOF1-206ENST00000445265 NBPF8Q3BBV2 869 aa21.34■■□□□ 1.01
TCOF1-206ENST00000445265 CUL7Q14999 1698 aa21.34■■□□□ 1.01
TCOF1-206ENST00000445265 BRD4O60885 1362 aaPredicted RBP21.32■■□□□ 1
TCOF1-206ENST00000445265 PDE4AP27815 886 aa21.31■■□□□ 1
TCOF1-206ENST00000445265 GGT6Q6P531 493 aa21.31■■□□□ 1
TCOF1-206ENST00000445265 SRPK2P78362 688 aaKnown RBP21.3■■□□□ 1
TCOF1-206ENST00000445265 KIAA1107Q9UPP5 1409 aa21.3■■□□□ 1
TCOF1-206ENST00000445265 DAPK1P53355 1430 aa21.28■■□□□ 1
TCOF1-206ENST00000445265 ROCK1Q13464 1354 aa21.28■■□□□ 1
TCOF1-206ENST00000445265 CENPQQ7L2Z9 268 aaPredicted RBP21.28■■□□□ 1
TCOF1-206ENST00000445265 EPRSP07814 1512 aaKnown RBP21.27■■□□□ 1
TCOF1-206ENST00000445265 RWDD1Q9H446 243 aaPredicted RBP21.27■■□□□ 1
TCOF1-206ENST00000445265 U2AF1L5P0DN76 240 aaPredicted RBP21.27■■□□□ 1
TCOF1-206ENST00000445265 U2AF1Q01081 240 aaKnown RBP eCLIP21.27■■□□□ 1
TCOF1-206ENST00000445265 TRIM44Q96DX7 344 aaPredicted RBP21.27■■□□□ 1
TCOF1-206ENST00000445265 TROQ12816 1431 aaPredicted RBP21.26■□□□□ 0.99
TCOF1-206ENST00000445265 CCDC146Q8IYE0 955 aa21.26■□□□□ 0.99
TCOF1-206ENST00000445265 PMFBP1Q8TBY8 1022 aa21.26■□□□□ 0.99
TCOF1-206ENST00000445265 USP35Q9P2H5 1018 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms