RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 POGZQ7Z3K3 1410 aa32.94■■■□□ 2.86
NCKIPSD-206ENST00000439518 MAGI2Q86UL8 1455 aa32.93■■■□□ 2.86
NCKIPSD-206ENST00000439518 ARID4BQ4LE39 1312 aaPredicted RBP32.9■■■□□ 2.86
NCKIPSD-206ENST00000439518 YEATS2Q9ULM3 1422 aa32.9■■■□□ 2.86
NCKIPSD-206ENST00000439518 BCORL1Q5H9F3 1711 aa32.89■■■□□ 2.86
NCKIPSD-206ENST00000439518 ZFYVE16Q7Z3T8 1539 aa32.89■■■□□ 2.86
NCKIPSD-206ENST00000439518 ARHGAP5Q13017 1502 aa32.87■■■□□ 2.85
NCKIPSD-206ENST00000439518 PTPRMP28827 1452 aa32.85■■■□□ 2.85
NCKIPSD-206ENST00000439518 HECW2Q9P2P5 1572 aa32.84■■■□□ 2.85
NCKIPSD-206ENST00000439518 CDC42BPBQ9Y5S2 1711 aa32.81■■■□□ 2.84
NCKIPSD-206ENST00000439518 ZNF518AQ6AHZ1 1483 aa32.79■■■□□ 2.84
NCKIPSD-206ENST00000439518 PREX2Q70Z35 1606 aa32.78■■■□□ 2.84
NCKIPSD-206ENST00000439518 MADDQ8WXG6 1647 aa32.78■■■□□ 2.84
NCKIPSD-206ENST00000439518 SIGLEC1Q9BZZ2 1709 aa32.77■■■□□ 2.84
NCKIPSD-206ENST00000439518 AFAP1Q8N556 730 aa32.76■■■□□ 2.83
NCKIPSD-206ENST00000439518 KDM5CP41229 1560 aa32.75■■■□□ 2.83
NCKIPSD-206ENST00000439518 CEP162Q5TB80 1403 aa32.74■■■□□ 2.83
NCKIPSD-206ENST00000439518 ATP10AO60312 1499 aa32.74■■■□□ 2.83
NCKIPSD-206ENST00000439518 CDC42BPAQ5VT25 1732 aa32.69■■■□□ 2.82
NCKIPSD-206ENST00000439518 ARHGEF12Q9NZN5 1544 aa32.69■■■□□ 2.82
NCKIPSD-206ENST00000439518 ABCC1P33527 1531 aa32.68■■■□□ 2.82
NCKIPSD-206ENST00000439518 C9orf84Q5VXU9 1444 aa32.68■■■□□ 2.82
NCKIPSD-206ENST00000439518 TRAPPC8Q9Y2L5 1435 aa32.66■■■□□ 2.82
NCKIPSD-206ENST00000439518 RIMS1Q86UR5 1692 aaKnown RBP32.66■■■□□ 2.82
NCKIPSD-206ENST00000439518 GPATCH8Q9UKJ3 1502 aaKnown RBP32.65■■■□□ 2.82
NCKIPSD-206ENST00000439518 MLH3Q9UHC1 1453 aa32.63■■■□□ 2.81
NCKIPSD-206ENST00000439518 MLECQ14165 292 aa32.62■■■□□ 2.81
NCKIPSD-206ENST00000439518 MTUS2Q5JR59 1369 aa32.61■■■□□ 2.81
NCKIPSD-206ENST00000439518 ITSN2Q9NZM3 1697 aa32.6■■■□□ 2.81
NCKIPSD-206ENST00000439518 DIP2CQ9Y2E4 1556 aa32.58■■■□□ 2.81
NCKIPSD-206ENST00000439518 MYT1LQ9UL68 1186 aa32.57■■■□□ 2.8
NCKIPSD-206ENST00000439518 LOC105371045A0A1W2PR82 267 aa32.56■■■□□ 2.8
NCKIPSD-206ENST00000439518 ZNF777Q9ULD5 760 aaPredicted RBP32.56■■■□□ 2.8
NCKIPSD-206ENST00000439518 SAMD9LQ8IVG5 1584 aa32.56■■■□□ 2.8
NCKIPSD-206ENST00000439518 CCNB3Q8WWL7 1395 aa32.55■■■□□ 2.8
NCKIPSD-206ENST00000439518 REREQ9P2R6 1566 aa32.54■■■□□ 2.8
NCKIPSD-206ENST00000439518 ABCA6Q8N139 1617 aa32.53■■■□□ 2.8
NCKIPSD-206ENST00000439518 CFDP1Q9UEE9 299 aaPredicted RBP32.53■■■□□ 2.8
NCKIPSD-206ENST00000439518 FER1L4A9Z1Z3 1794 aa32.52■■■□□ 2.8
NCKIPSD-206ENST00000439518 LMTK3Q96Q04 1460 aa32.5■■■□□ 2.79
NCKIPSD-206ENST00000439518 EHBP1L1Q8N3D4 1523 aa32.5■■■□□ 2.79
NCKIPSD-206ENST00000439518 SYCP2Q9BX26 1530 aa32.49■■■□□ 2.79
NCKIPSD-206ENST00000439518 KIAA1107Q9UPP5 1409 aa32.49■■■□□ 2.79
NCKIPSD-206ENST00000439518 KIDINS220Q9ULH0 1771 aa32.48■■■□□ 2.79
NCKIPSD-206ENST00000439518 HNRNPMP52272 730 aaKnown RBP eCLIP32.47■■■□□ 2.79
NCKIPSD-206ENST00000439518 PLEKHH2Q8IVE3 1493 aa32.47■■■□□ 2.79
NCKIPSD-206ENST00000439518 AGLP35573 1532 aa32.46■■■□□ 2.79
NCKIPSD-206ENST00000439518 PLPPR3Q6T4P5 718 aa32.44■■■□□ 2.78
NCKIPSD-206ENST00000439518 TIAM1Q13009 1591 aa32.44■■■□□ 2.78
NCKIPSD-206ENST00000439518 SPAG9O60271 1321 aaKnown RBP32.41■■■□□ 2.78
NCKIPSD-206ENST00000439518 VPS8Q8N3P4 1428 aa32.39■■■□□ 2.78
NCKIPSD-206ENST00000439518 ZNF644Q9H582 1327 aaPredicted RBP32.37■■■□□ 2.77
NCKIPSD-206ENST00000439518 CEBPAP49715 358 aaPredicted RBP32.35■■■□□ 2.77
NCKIPSD-206ENST00000439518 ATP7AQ04656 1500 aa32.33■■■□□ 2.77
NCKIPSD-206ENST00000439518 INO80Q9ULG1 1556 aaPredicted RBP32.32■■■□□ 2.77
NCKIPSD-206ENST00000439518 NCOA2Q15596 1464 aa32.32■■■□□ 2.76
NCKIPSD-206ENST00000439518 MBD5Q9P267 1494 aa32.31■■■□□ 2.76
NCKIPSD-206ENST00000439518 HSPA2P54652 639 aa32.31■■■□□ 2.76
NCKIPSD-206ENST00000439518 SUPT6HQ7KZ85 1726 aaKnown RBP32.29■■■□□ 2.76
NCKIPSD-206ENST00000439518 ILDR1Q86SU0 546 aaPredicted RBP32.28■■■□□ 2.76
NCKIPSD-206ENST00000439518 LRRC9Q6ZRR7 1453 aa32.24■■■□□ 2.75
NCKIPSD-206ENST00000439518 PLXNC1O60486 1568 aa32.24■■■□□ 2.75
NCKIPSD-206ENST00000439518 A2MP01023 1474 aa32.23■■■□□ 2.75
NCKIPSD-206ENST00000439518 ESF1Q9H501 851 aaKnown RBP32.23■■■□□ 2.75
NCKIPSD-206ENST00000439518 PREX1Q8TCU6 1659 aa32.21■■■□□ 2.75
NCKIPSD-206ENST00000439518 MAP3K1Q13233 1512 aa32.21■■■□□ 2.75
NCKIPSD-206ENST00000439518 CNTLNQ9NXG0 1405 aa32.21■■■□□ 2.75
NCKIPSD-206ENST00000439518 C3P01024 1663 aa32.2■■■□□ 2.74
NCKIPSD-206ENST00000439518 RTEL1-TNFRSF6BF6WH68 1400 aa32.19■■■□□ 2.74
NCKIPSD-206ENST00000439518 CAMSAP2Q08AD1 1489 aa32.18■■■□□ 2.74
NCKIPSD-206ENST00000439518 SETD1BQ9UPS6 1966 aaKnown RBP32.18■■■□□ 2.74
NCKIPSD-206ENST00000439518 KANK4Q5T7N3 995 aaPredicted RBP32.16■■■□□ 2.74
NCKIPSD-206ENST00000439518 RSPH4AQ5TD94 716 aa32.14■■■□□ 2.74
NCKIPSD-206ENST00000439518 CCDC141Q6ZP82 1450 aa32.14■■■□□ 2.74
NCKIPSD-206ENST00000439518 ADGBQ8N7X0 1667 aa32.14■■■□□ 2.74
NCKIPSD-206ENST00000439518 UHRF1BP1Q6BDS2 1440 aa32.13■■■□□ 2.73
NCKIPSD-206ENST00000439518 MROH2AA6NES4 1674 aa32.1■■■□□ 2.73
NCKIPSD-206ENST00000439518 ZMYM3Q14202 1370 aa32.08■■■□□ 2.73
NCKIPSD-206ENST00000439518 DHX29Q7Z478 1369 aaKnown RBP32.07■■■□□ 2.73
NCKIPSD-206ENST00000439518 ARHGEF5Q12774 1597 aa32.07■■■□□ 2.72
NCKIPSD-206ENST00000439518 GGT6Q6P531 493 aa32.06■■■□□ 2.72
NCKIPSD-206ENST00000439518 NPATQ14207 1427 aa32.04■■■□□ 2.72
NCKIPSD-206ENST00000439518 PPP6R1Q9UPN7 881 aa32.04■■■□□ 2.72
NCKIPSD-206ENST00000439518 CLTCQ00610 1675 aaKnown RBP32.01■■■□□ 2.71
NCKIPSD-206ENST00000439518 MYOM3Q5VTT5 1437 aa32■■■□□ 2.71
NCKIPSD-206ENST00000439518 MIA2Q96PC5 1412 aa32■■■□□ 2.71
NCKIPSD-206ENST00000439518 TSPY4P0CV99 314 aa31.98■■■□□ 2.71
NCKIPSD-206ENST00000439518 TSPY10P0CW01 314 aa31.98■■■□□ 2.71
NCKIPSD-206ENST00000439518 STRCQ7RTU9 1775 aa31.97■■■□□ 2.71
NCKIPSD-206ENST00000439518 FBXO41Q8TF61 875 aa31.96■■■□□ 2.71
NCKIPSD-206ENST00000439518 PTPRKQ15262 1439 aa31.94■■■□□ 2.7
NCKIPSD-206ENST00000439518 KIF3BO15066 747 aa31.94■■■□□ 2.7
NCKIPSD-206ENST00000439518 APLP2Q06481 763 aa31.94■■■□□ 2.7
NCKIPSD-206ENST00000439518 DMRT2Q9Y5R5 561 aa31.93■■■□□ 2.7
NCKIPSD-206ENST00000439518 MAST1Q9Y2H9 1570 aa31.9■■■□□ 2.7
NCKIPSD-206ENST00000439518 FAM135AQ9P2D6 1515 aa31.85■■■□□ 2.69
NCKIPSD-206ENST00000439518 NCOA1Q15788 1441 aa31.84■■■□□ 2.69
NCKIPSD-206ENST00000439518 PTPRTO14522 1441 aa31.83■■■□□ 2.69
NCKIPSD-206ENST00000439518 KDM5DQ9BY66 1539 aa31.82■■■□□ 2.68
NCKIPSD-206ENST00000439518 CERKQ8TCT0 537 aa31.81■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms