RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 NUP153P49790 1475 aaKnown RBP16.8■□□□□ 0.28
SMPD4-208ENST00000439029 PRXQ9BXM0 1461 aa16.8■□□□□ 0.28
SMPD4-208ENST00000439029 ARHGEF12Q9NZN5 1544 aa16.78■□□□□ 0.28
SMPD4-208ENST00000439029 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.77■□□□□ 0.28
SMPD4-208ENST00000439029 UHRF1BP1Q6BDS2 1440 aa16.77■□□□□ 0.27
SMPD4-208ENST00000439029 SCAPERQ9BY12 1400 aa16.76■□□□□ 0.27
SMPD4-208ENST00000439029 CFAP74Q9C0B2 1584 aa16.76■□□□□ 0.27
SMPD4-208ENST00000439029 MAGI2Q86UL8 1455 aa16.75■□□□□ 0.27
SMPD4-208ENST00000439029 LTBP4Q8N2S1 1624 aa16.74■□□□□ 0.27
SMPD4-208ENST00000439029 ATP10AO60312 1499 aa16.74■□□□□ 0.27
SMPD4-208ENST00000439029 SAMD9Q5K651 1589 aa16.74■□□□□ 0.27
SMPD4-208ENST00000439029 PTPRTO14522 1441 aa16.73■□□□□ 0.27
SMPD4-208ENST00000439029 C9orf84Q5VXU9 1444 aa16.72■□□□□ 0.27
SMPD4-208ENST00000439029 UBAP1LF5GYI3 381 aa16.7■□□□□ 0.26
SMPD4-208ENST00000439029 MYT1LQ9UL68 1186 aa16.7■□□□□ 0.26
SMPD4-208ENST00000439029 SETD1BQ9UPS6 1966 aaKnown RBP16.69■□□□□ 0.26
SMPD4-208ENST00000439029 PLCH2O75038 1416 aa16.65■□□□□ 0.26
SMPD4-208ENST00000439029 AFAP1Q8N556 730 aa16.65■□□□□ 0.26
SMPD4-208ENST00000439029 ZNF335Q9H4Z2 1342 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-208ENST00000439029 IQSEC2Q5JU85 1478 aa16.64■□□□□ 0.25
SMPD4-208ENST00000439029 CDK13Q14004 1512 aaKnown RBP16.63■□□□□ 0.25
SMPD4-208ENST00000439029 NCKAP5LQ9HCH0 1330 aa16.63■□□□□ 0.25
SMPD4-208ENST00000439029 C3P01024 1663 aa16.62■□□□□ 0.25
SMPD4-208ENST00000439029 NCOA1Q15788 1441 aa16.62■□□□□ 0.25
SMPD4-208ENST00000439029 EFCAB2Q5VUJ9 269 aa16.62■□□□□ 0.25
SMPD4-208ENST00000439029 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
SMPD4-208ENST00000439029 ATP1B4Q9UN42 357 aaPredicted RBP16.6■□□□□ 0.25
SMPD4-208ENST00000439029 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
SMPD4-208ENST00000439029 TRAPPC8Q9Y2L5 1435 aa16.59■□□□□ 0.25
SMPD4-208ENST00000439029 HSPA1LP34931 641 aa16.58■□□□□ 0.24
SMPD4-208ENST00000439029 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
SMPD4-208ENST00000439029 CAMSAP1Q5T5Y3 1602 aa16.57■□□□□ 0.24
SMPD4-208ENST00000439029 PIP4K2BP78356 416 aa16.56■□□□□ 0.24
SMPD4-208ENST00000439029 DIP2CQ9Y2E4 1556 aa16.55■□□□□ 0.24
SMPD4-208ENST00000439029 MED1Q15648 1581 aaPredicted RBP16.55■□□□□ 0.24
SMPD4-208ENST00000439029 ZNF518AQ6AHZ1 1483 aa16.54■□□□□ 0.24
SMPD4-208ENST00000439029 MYO5CQ9NQX4 1742 aa16.53■□□□□ 0.24
SMPD4-208ENST00000439029 ABCA6Q8N139 1617 aa16.52■□□□□ 0.23
SMPD4-208ENST00000439029 ARHGAP5Q13017 1502 aa16.51■□□□□ 0.23
SMPD4-208ENST00000439029 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
SMPD4-208ENST00000439029 KDM5CP41229 1560 aa16.51■□□□□ 0.23
SMPD4-208ENST00000439029 KIF14Q15058 1648 aa16.5■□□□□ 0.23
SMPD4-208ENST00000439029 SENP3Q9H4L4 574 aaPredicted RBP16.49■□□□□ 0.23
SMPD4-208ENST00000439029 REREQ9P2R6 1566 aa16.47■□□□□ 0.23
SMPD4-208ENST00000439029 EHMT2Q96KQ7 1210 aa16.45■□□□□ 0.22
SMPD4-208ENST00000439029 ZMYM3Q14202 1370 aa16.45■□□□□ 0.22
SMPD4-208ENST00000439029 AGLP35573 1532 aa16.45■□□□□ 0.22
SMPD4-208ENST00000439029 CNTLNQ9NXG0 1405 aa16.45■□□□□ 0.22
SMPD4-208ENST00000439029 MLH3Q9UHC1 1453 aa16.44■□□□□ 0.22
SMPD4-208ENST00000439029 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
SMPD4-208ENST00000439029 PKD2Q13563 968 aa16.43■□□□□ 0.22
SMPD4-208ENST00000439029 CDK11AQ9UQ88 783 aaPredicted RBP16.42■□□□□ 0.22
SMPD4-208ENST00000439029 NPATQ14207 1427 aa16.42■□□□□ 0.22
SMPD4-208ENST00000439029 TOM1O60784 492 aa16.41■□□□□ 0.22
SMPD4-208ENST00000439029 TROQ12816 1431 aaPredicted RBP16.39■□□□□ 0.21
SMPD4-208ENST00000439029 SUPT6HQ7KZ85 1726 aaKnown RBP16.39■□□□□ 0.21
SMPD4-208ENST00000439029 TCOF1Q13428 1488 aaKnown RBP16.38■□□□□ 0.21
SMPD4-208ENST00000439029 CDC42BPBQ9Y5S2 1711 aa16.38■□□□□ 0.21
SMPD4-208ENST00000439029 KIDINS220Q9ULH0 1771 aa16.38■□□□□ 0.21
SMPD4-208ENST00000439029 PLA2R1Q13018 1463 aa16.37■□□□□ 0.21
SMPD4-208ENST00000439029 MYO3AQ8NEV4 1616 aa16.37■□□□□ 0.21
SMPD4-208ENST00000439029 CEP170BQ9Y4F5 1589 aaPredicted RBP16.36■□□□□ 0.21
SMPD4-208ENST00000439029 CLIP1P30622 1438 aa16.36■□□□□ 0.21
SMPD4-208ENST00000439029 ABCC1P33527 1531 aa16.35■□□□□ 0.21
SMPD4-208ENST00000439029 MROH2AA6NES4 1674 aa16.35■□□□□ 0.21
SMPD4-208ENST00000439029 CLTCQ00610 1675 aaKnown RBP16.35■□□□□ 0.21
SMPD4-208ENST00000439029 ZNF777Q9ULD5 760 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-208ENST00000439029 ITSN2Q9NZM3 1697 aa16.34■□□□□ 0.21
SMPD4-208ENST00000439029 GGT6Q6P531 493 aa16.34■□□□□ 0.21
SMPD4-208ENST00000439029 PTPRKQ15262 1439 aa16.34■□□□□ 0.21
SMPD4-208ENST00000439029 ZNF142P52746 1687 aaPredicted RBP16.34■□□□□ 0.21
SMPD4-208ENST00000439029 FMN1Q68DA7 1419 aa16.31■□□□□ 0.2
SMPD4-208ENST00000439029 SHANK2Q9UPX8 1470 aa16.3■□□□□ 0.2
SMPD4-208ENST00000439029 SPAG9O60271 1321 aaKnown RBP16.3■□□□□ 0.2
SMPD4-208ENST00000439029 PREX2Q70Z35 1606 aa16.3■□□□□ 0.2
SMPD4-208ENST00000439029 HNRNPMP52272 730 aaKnown RBP eCLIP16.29■□□□□ 0.21e-6■■■■□ 22.6
SMPD4-208ENST00000439029 RGS17Q9UGC6 210 aaPredicted RBP16.29■□□□□ 0.2
SMPD4-208ENST00000439029 SAMD9LQ8IVG5 1584 aa16.29■□□□□ 0.2
SMPD4-208ENST00000439029 CPS1P31327 1500 aa16.29■□□□□ 0.2
SMPD4-208ENST00000439029 LRRIQ1Q96JM4 1722 aa16.28■□□□□ 0.2
SMPD4-208ENST00000439029 UBTFP17480 764 aaKnown RBP16.28■□□□□ 0.2
SMPD4-208ENST00000439029 ALKQ9UM73 1620 aa16.27■□□□□ 0.2
SMPD4-208ENST00000439029 ARHGAP35Q9NRY4 1499 aa16.27■□□□□ 0.19
SMPD4-208ENST00000439029 A2ML1A8K2U0 1454 aa16.26■□□□□ 0.19
SMPD4-208ENST00000439029 DNMT1P26358 1616 aaKnown RBP16.26■□□□□ 0.19
SMPD4-208ENST00000439029 FBXO31Q5XUX0 539 aaPredicted RBP16.25■□□□□ 0.19
SMPD4-208ENST00000439029 EEA1Q15075 1411 aa16.25■□□□□ 0.19
SMPD4-208ENST00000439029 NEURL4Q96JN8 1562 aa16.25■□□□□ 0.19
SMPD4-208ENST00000439029 SYCP2Q9BX26 1530 aa16.24■□□□□ 0.19
SMPD4-208ENST00000439029 A2MP01023 1474 aa16.22■□□□□ 0.19
SMPD4-208ENST00000439029 POLR1AO95602 1720 aaPredicted RBP16.22■□□□□ 0.19
SMPD4-208ENST00000439029 CDC42BPAQ5VT25 1732 aa16.22■□□□□ 0.19
SMPD4-208ENST00000439029 VWDEQ8N2E2 1590 aa16.21■□□□□ 0.19
SMPD4-208ENST00000439029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.21■□□□□ 0.194e-10■■■■■ 33.4
SMPD4-208ENST00000439029 ATP7AQ04656 1500 aa16.2■□□□□ 0.18
SMPD4-208ENST00000439029 ANKLE2Q86XL3 938 aa16.2■□□□□ 0.18
SMPD4-208ENST00000439029 PLXNC1O60486 1568 aa16.19■□□□□ 0.18
SMPD4-208ENST00000439029 TNRQ92752 1358 aa16.19■□□□□ 0.18
SMPD4-208ENST00000439029 POTEAQ6S8J7 498 aa16.19■□□□□ 0.18
SMPD4-208ENST00000439029 NPHP4O75161 1426 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms