RNA–Protein interactions for RNA: ENST00000428894.1

HMGB3P5-201, Transcript of high mobility group box 3 pseudogene 5, humanhuman

BASIC

Gene HMGB3P5, Length 612 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P5-201ENST00000428894 POTEGQ6S5H5 508 aa13.88□□□□□ -0.19
HMGB3P5-201ENST00000428894 C2orf72A6NCS6 295 aa13.87□□□□□ -0.19
HMGB3P5-201ENST00000428894 HOXB3P14651 431 aaPredicted RBP13.87□□□□□ -0.19
HMGB3P5-201ENST00000428894 KIF3CO14782 793 aa13.85□□□□□ -0.19
HMGB3P5-201ENST00000428894 TMC2Q8TDI7 906 aa13.85□□□□□ -0.19
HMGB3P5-201ENST00000428894 DOK7Q18PE1 504 aa13.84□□□□□ -0.19
HMGB3P5-201ENST00000428894 ZNF710Q8N1W2 664 aa13.81□□□□□ -0.2
HMGB3P5-201ENST00000428894 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.79□□□□□ -0.2
HMGB3P5-201ENST00000428894 RIMBP2O15034 1052 aa13.77□□□□□ -0.21
HMGB3P5-201ENST00000428894 MARVELD3Q96A59 401 aa13.77□□□□□ -0.21
HMGB3P5-201ENST00000428894 GPHNQ9NQX3 736 aaPredicted RBP13.75□□□□□ -0.21
HMGB3P5-201ENST00000428894 SPRYD3Q8NCJ5 442 aa13.74□□□□□ -0.21
HMGB3P5-201ENST00000428894 HOXB1P14653 301 aaPredicted RBP13.72□□□□□ -0.21
HMGB3P5-201ENST00000428894 EMP3P54852 163 aa13.71□□□□□ -0.21
HMGB3P5-201ENST00000428894 ZSWIM6Q9HCJ5 1215 aa13.71□□□□□ -0.21
HMGB3P5-201ENST00000428894 FOXK1P85037 733 aa13.7□□□□□ -0.22
HMGB3P5-201ENST00000428894 PAXIP1Q6ZW49 1069 aaPredicted RBP13.69□□□□□ -0.22
HMGB3P5-201ENST00000428894 CFAP44Q96MT7 982 aa13.69□□□□□ -0.22
HMGB3P5-201ENST00000428894 CRISPLD2Q9H0B8 497 aa13.69□□□□□ -0.22
HMGB3P5-201ENST00000428894 PDE4AP27815 886 aa13.68□□□□□ -0.22
HMGB3P5-201ENST00000428894 DSG2Q14126 1118 aa13.68□□□□□ -0.22
HMGB3P5-201ENST00000428894 PLPP6Q8IY26 295 aa13.68□□□□□ -0.22
HMGB3P5-201ENST00000428894 GPR153Q6NV75 609 aa13.67□□□□□ -0.22
HMGB3P5-201ENST00000428894 NCKAP5LQ9HCH0 1330 aa13.66□□□□□ -0.22
HMGB3P5-201ENST00000428894 ARSIQ5FYB1 569 aa13.66□□□□□ -0.22
HMGB3P5-201ENST00000428894 CADPS2Q86UW7 1296 aa13.65□□□□□ -0.22
HMGB3P5-201ENST00000428894 FAM205CA6NFA0 338 aa13.64□□□□□ -0.23
HMGB3P5-201ENST00000428894 SLC34A2O95436 690 aa13.63□□□□□ -0.23
HMGB3P5-201ENST00000428894 PCDH10Q9P2E7 1040 aa13.63□□□□□ -0.23
HMGB3P5-201ENST00000428894 KHSRPQ92945 711 aaKnown RBP eCLIP13.62□□□□□ -0.23
HMGB3P5-201ENST00000428894 LARP6Q9BRS8 491 aaKnown RBP13.62□□□□□ -0.23
HMGB3P5-201ENST00000428894 CDAN1Q8IWY9 1227 aa13.61□□□□□ -0.23
HMGB3P5-201ENST00000428894 PPP1R15BQ5SWA1 713 aa13.6□□□□□ -0.23
HMGB3P5-201ENST00000428894 PCDHGA4Q9Y5G9 962 aa13.6□□□□□ -0.23
HMGB3P5-201ENST00000428894 ERBB3P21860 1342 aa13.6□□□□□ -0.23
HMGB3P5-201ENST00000428894 HS3ST6Q96QI5 342 aa13.59□□□□□ -0.23
HMGB3P5-201ENST00000428894 POTEB3A0JP26 581 aa13.58□□□□□ -0.24
HMGB3P5-201ENST00000428894 POTEBQ6S5H4 581 aa13.58□□□□□ -0.24
HMGB3P5-201ENST00000428894 DDX27Q96GQ7 796 aaKnown RBP13.56□□□□□ -0.24
HMGB3P5-201ENST00000428894 PTCD2Q8WV60 388 aaKnown RBP13.55□□□□□ -0.24
HMGB3P5-201ENST00000428894 NUDT7P0C024 238 aa13.54□□□□□ -0.24
HMGB3P5-201ENST00000428894 MFSD10Q14728 455 aa13.54□□□□□ -0.24
HMGB3P5-201ENST00000428894 VARS2Q5ST30 1063 aaKnown RBP13.52□□□□□ -0.25
HMGB3P5-201ENST00000428894 TBC1D12O60347 775 aa13.51□□□□□ -0.25
HMGB3P5-201ENST00000428894 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
HMGB3P5-201ENST00000428894 UPF1Q92900 1129 aaKnown RBP eCLIP13.5□□□□□ -0.25
HMGB3P5-201ENST00000428894 OXER1Q8TDS5 423 aa13.48□□□□□ -0.25
HMGB3P5-201ENST00000428894 LHX6Q9UPM6 363 aa13.45□□□□□ -0.26
HMGB3P5-201ENST00000428894 KDM4FA0A1W2PPD8 638 aa13.43□□□□□ -0.26
HMGB3P5-201ENST00000428894 ZNF687Q8N1G0 1237 aa13.41□□□□□ -0.26
HMGB3P5-201ENST00000428894 PLSCR2Q9NRY7 297 aa13.4□□□□□ -0.26
HMGB3P5-201ENST00000428894 EMILIN3Q9NT22 766 aa13.4□□□□□ -0.26
HMGB3P5-201ENST00000428894 KRTAP3-3Q9BYR6 98 aa13.39□□□□□ -0.27
HMGB3P5-201ENST00000428894 KRTAP3-2Q9BYR7 98 aa13.39□□□□□ -0.27
HMGB3P5-201ENST00000428894 TSHZ2Q9NRE2 1034 aa13.39□□□□□ -0.27
HMGB3P5-201ENST00000428894 MAP3K9P80192 1104 aa13.38□□□□□ -0.27
HMGB3P5-201ENST00000428894 CAMK2BQ13554 666 aa13.36□□□□□ -0.27
HMGB3P5-201ENST00000428894 WDR70Q9NW82 654 aa13.36□□□□□ -0.27
HMGB3P5-201ENST00000428894 PSDA5PKW4 1024 aaPredicted RBP13.34□□□□□ -0.27
HMGB3P5-201ENST00000428894 EVI5O60447 810 aa13.33□□□□□ -0.28
HMGB3P5-201ENST00000428894 PLCB2Q00722 1185 aa13.32□□□□□ -0.28
HMGB3P5-201ENST00000428894 ANO8Q9HCE9 1232 aaPredicted RBP13.29□□□□□ -0.28
HMGB3P5-201ENST00000428894 E2F4Q16254 413 aa13.28□□□□□ -0.28
HMGB3P5-201ENST00000428894 DPYSL4O14531 572 aa13.27□□□□□ -0.29
HMGB3P5-201ENST00000428894 PPP4R3BQ5MIZ7 849 aa13.27□□□□□ -0.29
HMGB3P5-201ENST00000428894 SPNS2Q8IVW8 549 aa13.26□□□□□ -0.29
HMGB3P5-201ENST00000428894 POTEEQ6S8J3 1075 aa13.25□□□□□ -0.29
HMGB3P5-201ENST00000428894 ZNF454Q8N9F8 522 aa13.25□□□□□ -0.29
HMGB3P5-201ENST00000428894 AXIN2Q9Y2T1 843 aa13.25□□□□□ -0.29
HMGB3P5-201ENST00000428894 PBX2P40425 430 aa13.24□□□□□ -0.29
HMGB3P5-201ENST00000428894 FOSBP53539 338 aa13.22□□□□□ -0.29
HMGB3P5-201ENST00000428894 ANKRD13DQ6ZTN6 518 aa13.21□□□□□ -0.29
HMGB3P5-201ENST00000428894 ARHGAP33O14559 1287 aa13.2□□□□□ -0.3
HMGB3P5-201ENST00000428894 LSM11P83369 360 aaKnown RBP eCLIP13.19□□□□□ -0.3
HMGB3P5-201ENST00000428894 JPH4Q96JJ6 628 aa13.19□□□□□ -0.3
HMGB3P5-201ENST00000428894 PSEN2P49810 448 aa13.16□□□□□ -0.3
HMGB3P5-201ENST00000428894 HAP1P54257 671 aaPredicted RBP13.16□□□□□ -0.3
HMGB3P5-201ENST00000428894 MMRN1Q13201 1228 aa13.16□□□□□ -0.3
HMGB3P5-201ENST00000428894 ZDHHC16Q969W1 377 aa13.15□□□□□ -0.3
HMGB3P5-201ENST00000428894 KCNK17Q96T54 332 aa13.14□□□□□ -0.31
HMGB3P5-201ENST00000428894 ARIH1Q9Y4X5 557 aaPredicted RBP13.14□□□□□ -0.31
HMGB3P5-201ENST00000428894 PCDHGA10Q9Y5H3 936 aa13.14□□□□□ -0.31
HMGB3P5-201ENST00000428894 SPDYE16A6NNV3 312 aaPredicted RBP13.13□□□□□ -0.31
HMGB3P5-201ENST00000428894 PDIA6Q15084 440 aa13.13□□□□□ -0.31
HMGB3P5-201ENST00000428894 KCNH8Q96L42 1107 aa13.13□□□□□ -0.31
HMGB3P5-201ENST00000428894 BCL2L12Q9HB09 334 aa13.13□□□□□ -0.31
HMGB3P5-201ENST00000428894 PHF14O94880 888 aa13.12□□□□□ -0.31
HMGB3P5-201ENST00000428894 DMRTA1Q5VZB9 504 aa13.12□□□□□ -0.31
HMGB3P5-201ENST00000428894 ADAM33Q9BZ11 813 aa13.12□□□□□ -0.31
HMGB3P5-201ENST00000428894 PTGER2P43116 358 aa13.1□□□□□ -0.31
HMGB3P5-201ENST00000428894 DDX12PQ92771 950 aa13.1□□□□□ -0.31
HMGB3P5-201ENST00000428894 PTPREP23469 700 aa13.09□□□□□ -0.31
HMGB3P5-201ENST00000428894 TYW1BQ6NUM6 668 aa13.09□□□□□ -0.31
HMGB3P5-201ENST00000428894 FBXW7Q969H0 707 aa13.07□□□□□ -0.32
HMGB3P5-201ENST00000428894 EPAS1Q99814 870 aa13.07□□□□□ -0.32
HMGB3P5-201ENST00000428894 ADGRD1Q6QNK2 874 aa13.06□□□□□ -0.32
HMGB3P5-201ENST00000428894 KCNV2Q8TDN2 545 aa13.06□□□□□ -0.32
HMGB3P5-201ENST00000428894 TK2O00142 265 aa13.04□□□□□ -0.32
HMGB3P5-201ENST00000428894 ARHGEF1Q92888 912 aaKnown RBP13.04□□□□□ -0.32
HMGB3P5-201ENST00000428894 MYT1LQ9UL68 1186 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms