RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 ARID3CA6NKF2 412 aa14.65□□□□□ -0.06
SMC1A-203ENST00000428014 AKNAQ7Z591 1439 aa14.65□□□□□ -0.06
SMC1A-203ENST00000428014 MAP3K1Q13233 1512 aa14.64□□□□□ -0.07
SMC1A-203ENST00000428014 ZMYM4Q5VZL5 1548 aa14.63□□□□□ -0.07
SMC1A-203ENST00000428014 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
SMC1A-203ENST00000428014 MYO5CQ9NQX4 1742 aa14.63□□□□□ -0.07
SMC1A-203ENST00000428014 DENND4BO75064 1496 aaPredicted RBP14.63□□□□□ -0.07
SMC1A-203ENST00000428014 EFCAB2Q5VUJ9 269 aa14.62□□□□□ -0.07
SMC1A-203ENST00000428014 VPS8Q8N3P4 1428 aa14.61□□□□□ -0.07
SMC1A-203ENST00000428014 RICTORQ6R327 1708 aa14.59□□□□□ -0.07
SMC1A-203ENST00000428014 ATP1B4Q9UN42 357 aaPredicted RBP14.59□□□□□ -0.07
SMC1A-203ENST00000428014 EHBP1L1Q8N3D4 1523 aa14.58□□□□□ -0.08
SMC1A-203ENST00000428014 FRMPD1Q5SYB0 1578 aa14.58□□□□□ -0.08
SMC1A-203ENST00000428014 PREX2Q70Z35 1606 aa14.58□□□□□ -0.08
SMC1A-203ENST00000428014 ADGRL1O94910 1474 aa14.57□□□□□ -0.08
SMC1A-203ENST00000428014 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
SMC1A-203ENST00000428014 POGZQ7Z3K3 1410 aa14.57□□□□□ -0.08
SMC1A-203ENST00000428014 ZNF518AQ6AHZ1 1483 aa14.57□□□□□ -0.08
SMC1A-203ENST00000428014 MTUS2Q5JR59 1369 aa14.55□□□□□ -0.08
SMC1A-203ENST00000428014 KIAA1107Q9UPP5 1409 aa14.55□□□□□ -0.08
SMC1A-203ENST00000428014 PLEKHH2Q8IVE3 1493 aa14.55□□□□□ -0.08
SMC1A-203ENST00000428014 KDM5CP41229 1560 aa14.55□□□□□ -0.08
SMC1A-203ENST00000428014 SCAPERQ9BY12 1400 aa14.54□□□□□ -0.08
SMC1A-203ENST00000428014 ARHGEF40Q8TER5 1519 aa14.54□□□□□ -0.08
SMC1A-203ENST00000428014 CDC42BPBQ9Y5S2 1711 aa14.54□□□□□ -0.08
SMC1A-203ENST00000428014 ARHGAP5Q13017 1502 aa14.53□□□□□ -0.08
SMC1A-203ENST00000428014 GPATCH8Q9UKJ3 1502 aaKnown RBP14.53□□□□□ -0.08
SMC1A-203ENST00000428014 DMRT2Q9Y5R5 561 aa14.53□□□□□ -0.08
SMC1A-203ENST00000428014 MLH3Q9UHC1 1453 aa14.52□□□□□ -0.08
SMC1A-203ENST00000428014 CDC42BPAQ5VT25 1732 aa14.52□□□□□ -0.09
SMC1A-203ENST00000428014 TIAM1Q13009 1591 aa14.51□□□□□ -0.09
SMC1A-203ENST00000428014 LOC105371045A0A1W2PR82 267 aa14.51□□□□□ -0.09
SMC1A-203ENST00000428014 RAPGEF3O95398 923 aa14.51□□□□□ -0.09
SMC1A-203ENST00000428014 REREQ9P2R6 1566 aa14.51□□□□□ -0.09
SMC1A-203ENST00000428014 ABCC1P33527 1531 aa14.51□□□□□ -0.09
SMC1A-203ENST00000428014 KDM4FA0A1W2PPD8 638 aa14.5□□□□□ -0.09
SMC1A-203ENST00000428014 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
SMC1A-203ENST00000428014 CCNB3Q8WWL7 1395 aa14.48□□□□□ -0.09
SMC1A-203ENST00000428014 ZFYVE16Q7Z3T8 1539 aa14.48□□□□□ -0.09
SMC1A-203ENST00000428014 LRRC9Q6ZRR7 1453 aa14.47□□□□□ -0.09
SMC1A-203ENST00000428014 RSPH4AQ5TD94 716 aa14.47□□□□□ -0.09
SMC1A-203ENST00000428014 SUPT6HQ7KZ85 1726 aaKnown RBP14.46□□□□□ -0.09
SMC1A-203ENST00000428014 ATP10AO60312 1499 aa14.45□□□□□ -0.1
SMC1A-203ENST00000428014 HECW2Q9P2P5 1572 aa14.44□□□□□ -0.1
SMC1A-203ENST00000428014 C9orf84Q5VXU9 1444 aa14.44□□□□□ -0.1
SMC1A-203ENST00000428014 CFDP1Q9UEE9 299 aaPredicted RBP14.44□□□□□ -0.1
SMC1A-203ENST00000428014 ADAMTSL3P82987 1691 aa14.43□□□□□ -0.1
SMC1A-203ENST00000428014 AGLP35573 1532 aa14.43□□□□□ -0.1
SMC1A-203ENST00000428014 NCOA2Q15596 1464 aa14.43□□□□□ -0.1
SMC1A-203ENST00000428014 SAMD9LQ8IVG5 1584 aa14.43□□□□□ -0.1
SMC1A-203ENST00000428014 MIA2Q96PC5 1412 aa14.42□□□□□ -0.1
SMC1A-203ENST00000428014 ARHGEF12Q9NZN5 1544 aa14.42□□□□□ -0.1
SMC1A-203ENST00000428014 RTEL1-TNFRSF6BF6WH68 1400 aa14.41□□□□□ -0.1
SMC1A-203ENST00000428014 BCORL1Q5H9F3 1711 aa14.41□□□□□ -0.1
SMC1A-203ENST00000428014 YEATS2Q9ULM3 1422 aa14.41□□□□□ -0.1
SMC1A-203ENST00000428014 TRAPPC8Q9Y2L5 1435 aa14.4□□□□□ -0.1
SMC1A-203ENST00000428014 MBD5Q9P267 1494 aa14.39□□□□□ -0.11
SMC1A-203ENST00000428014 AFAP1Q8N556 730 aa14.38□□□□□ -0.11
SMC1A-203ENST00000428014 DIP2CQ9Y2E4 1556 aa14.38□□□□□ -0.11
SMC1A-203ENST00000428014 SYCP2Q9BX26 1530 aa14.37□□□□□ -0.11
SMC1A-203ENST00000428014 APLP2Q06481 763 aa14.37□□□□□ -0.11
SMC1A-203ENST00000428014 ARHGEF5Q12774 1597 aa14.37□□□□□ -0.11
SMC1A-203ENST00000428014 KIDINS220Q9ULH0 1771 aa14.37□□□□□ -0.11
SMC1A-203ENST00000428014 INO80Q9ULG1 1556 aaPredicted RBP14.36□□□□□ -0.11
SMC1A-203ENST00000428014 RNF216Q9NWF9 866 aaPredicted RBP14.36□□□□□ -0.11
SMC1A-203ENST00000428014 MYOM3Q5VTT5 1437 aa14.35□□□□□ -0.11
SMC1A-203ENST00000428014 ATP7AQ04656 1500 aa14.34□□□□□ -0.11
SMC1A-203ENST00000428014 SPAG9O60271 1321 aaKnown RBP14.34□□□□□ -0.11
SMC1A-203ENST00000428014 ABCA6Q8N139 1617 aa14.33□□□□□ -0.11
SMC1A-203ENST00000428014 PTPRMP28827 1452 aa14.33□□□□□ -0.12
SMC1A-203ENST00000428014 CCDC141Q6ZP82 1450 aa14.33□□□□□ -0.12
SMC1A-203ENST00000428014 FAM135AQ9P2D6 1515 aa14.33□□□□□ -0.12
SMC1A-203ENST00000428014 CAMSAP2Q08AD1 1489 aa14.32□□□□□ -0.12
SMC1A-203ENST00000428014 PLXNC1O60486 1568 aa14.32□□□□□ -0.12
SMC1A-203ENST00000428014 CNTLNQ9NXG0 1405 aa14.31□□□□□ -0.12
SMC1A-203ENST00000428014 MAST1Q9Y2H9 1570 aa14.3□□□□□ -0.12
SMC1A-203ENST00000428014 KANK4Q5T7N3 995 aaPredicted RBP14.3□□□□□ -0.12
SMC1A-203ENST00000428014 ARID4BQ4LE39 1312 aaPredicted RBP14.3□□□□□ -0.12
SMC1A-203ENST00000428014 ADGBQ8N7X0 1667 aa14.3□□□□□ -0.12
SMC1A-203ENST00000428014 HNRNPMP52272 730 aaKnown RBP eCLIP14.29□□□□□ -0.12
SMC1A-203ENST00000428014 ZNF777Q9ULD5 760 aaPredicted RBP14.29□□□□□ -0.12
SMC1A-203ENST00000428014 MADDQ8WXG6 1647 aa14.29□□□□□ -0.12
SMC1A-203ENST00000428014 SIGLEC1Q9BZZ2 1709 aa14.29□□□□□ -0.12
SMC1A-203ENST00000428014 A2MP01023 1474 aa14.28□□□□□ -0.12
SMC1A-203ENST00000428014 TCOF1Q13428 1488 aaKnown RBP14.28□□□□□ -0.12
SMC1A-203ENST00000428014 SHANK2Q9UPX8 1470 aa14.27□□□□□ -0.12
SMC1A-203ENST00000428014 HOXD11P31277 338 aaPredicted RBP14.27□□□□□ -0.13
SMC1A-203ENST00000428014 SETD1BQ9UPS6 1966 aaKnown RBP14.27□□□□□ -0.13
SMC1A-203ENST00000428014 DHX29Q7Z478 1369 aaKnown RBP14.26□□□□□ -0.13
SMC1A-203ENST00000428014 TSPY4P0CV99 314 aa14.26□□□□□ -0.13
SMC1A-203ENST00000428014 TSPY10P0CW01 314 aa14.26□□□□□ -0.13
SMC1A-203ENST00000428014 FER1L4A9Z1Z3 1794 aa14.25□□□□□ -0.13
SMC1A-203ENST00000428014 ZNF644Q9H582 1327 aaPredicted RBP14.25□□□□□ -0.13
SMC1A-203ENST00000428014 FGD6Q6ZV73 1430 aa14.24□□□□□ -0.13
SMC1A-203ENST00000428014 MROH2AA6NES4 1674 aa14.23□□□□□ -0.13
SMC1A-203ENST00000428014 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
SMC1A-203ENST00000428014 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.22□□□□□ -0.13
SMC1A-203ENST00000428014 MYT1LQ9UL68 1186 aa14.22□□□□□ -0.13
SMC1A-203ENST00000428014 RIMS1Q86UR5 1692 aaKnown RBP14.21□□□□□ -0.13
SMC1A-203ENST00000428014 NPATQ14207 1427 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms